Wall clock time and date at job start Tue Mar 31 2020 19:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46997 * 2 1 4 4 O 1.42895 * 109.47205 * 239.99755 * 2 1 3 5 5 C 1.35726 * 117.00304 * 274.74954 * 4 2 1 6 6 C 1.39232 * 120.37911 * 5.36751 * 5 4 2 7 7 C 1.38318 * 118.44329 * 179.97438 * 6 5 4 8 8 C 1.39466 * 119.13647 * 0.02562 * 7 6 5 9 9 C 1.47926 * 119.66062 * 180.02562 * 8 7 6 10 10 O 1.21547 * 119.99981 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99943 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99706 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.47637 * 325.00121 * 12 11 9 14 14 C 1.53004 * 109.47002 * 85.00407 * 12 11 9 15 15 C 1.53003 * 109.47162 * 205.00065 * 12 11 9 16 16 C 1.52997 * 109.46771 * 65.00170 * 15 12 11 17 17 H 1.09002 * 109.47179 * 55.00363 * 16 15 12 18 18 C 1.53003 * 109.46956 * 174.99927 * 16 15 12 19 19 N 1.46500 * 109.47431 * 294.99840 * 16 15 12 20 20 C 1.36941 * 119.99926 * 154.99694 * 19 16 15 21 21 H 1.08000 * 120.00093 * 0.02562 * 20 19 16 22 22 C 1.38810 * 119.99815 * 180.02562 * 20 19 16 23 23 N 1.31623 * 120.00114 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00121 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47612 * 89.99283 * 24 22 20 26 26 H 1.48501 * 109.47197 * 210.00067 * 24 22 20 27 27 H 1.48506 * 109.46775 * 329.99232 * 24 22 20 28 28 N 1.32798 * 120.68302 * 359.97438 * 8 7 6 29 29 C 1.31380 * 121.69581 * 359.73483 * 28 8 7 30 30 H 1.08998 * 109.47200 * 60.00679 * 1 2 3 31 31 H 1.09005 * 109.47003 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47315 * 299.99785 * 1 2 3 33 33 H 1.09003 * 109.47048 * 120.00046 * 2 1 3 34 34 H 1.08996 * 109.46913 * 59.99968 * 3 2 1 35 35 H 1.09000 * 109.46744 * 180.02562 * 3 2 1 36 36 H 1.08998 * 109.46591 * 299.99694 * 3 2 1 37 37 H 1.07997 * 120.78047 * 0.02562 * 6 5 4 38 38 H 1.08007 * 120.43621 * 179.97438 * 7 6 5 39 39 H 0.96994 * 119.99968 * 0.02562 * 11 9 8 40 40 H 1.08999 * 109.47356 * 179.97438 * 14 12 11 41 41 H 1.09001 * 109.47233 * 300.00082 * 14 12 11 42 42 H 1.09001 * 109.47008 * 60.00128 * 14 12 11 43 43 H 1.08999 * 109.47224 * 185.00180 * 15 12 11 44 44 H 1.09000 * 109.47040 * 305.00883 * 15 12 11 45 45 H 1.09002 * 109.46820 * 60.00216 * 18 16 15 46 46 H 1.09003 * 109.47091 * 180.02562 * 18 16 15 47 47 H 1.08997 * 109.47518 * 300.00135 * 18 16 15 48 48 H 0.96998 * 120.00031 * 335.00694 * 19 16 15 49 49 H 0.97001 * 120.00205 * 179.97438 * 23 22 20 50 50 H 1.08000 * 119.60046 * 180.25971 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.1173 -2.0245 -1.0961 6 6 1.6718 -2.7097 0.0311 7 6 1.8039 -4.0863 0.0603 8 6 2.3757 -4.7369 -1.0328 9 6 2.5221 -6.2088 -1.0141 10 8 2.1454 -6.8448 -0.0492 11 7 3.0732 -6.8446 -2.0670 12 6 3.2187 -8.3022 -2.0482 13 1 3.4388 -8.6324 -1.0330 14 6 1.9175 -8.9508 -2.5247 15 6 4.3631 -8.7125 -2.9772 16 6 5.6840 -8.1668 -2.4309 17 1 5.8178 -8.5017 -1.4023 18 6 6.8418 -8.6804 -3.2892 19 7 5.6603 -6.7025 -2.4686 20 6 6.4450 -5.9826 -1.6076 21 1 7.0816 -6.4944 -0.9010 22 6 6.4221 -4.5952 -1.6430 23 7 5.6467 -3.9715 -2.5044 24 14 7.4930 -3.6131 -0.4690 25 1 8.8141 -3.3599 -1.0980 26 1 6.8338 -2.3181 -0.1633 27 1 7.6823 -4.3809 0.7881 28 7 2.7891 -4.0488 -2.0907 29 6 2.6729 -2.7416 -2.1524 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4425 -0.0005 36 1 1.6766 1.9562 -0.8900 37 1 1.2325 -2.1790 0.8627 38 1 1.4695 -4.6499 0.9187 39 1 3.3741 -6.3370 -2.8368 40 1 2.0259 -10.0353 -2.5112 41 1 1.1022 -8.6585 -1.8630 42 1 1.6976 -8.6207 -3.5400 43 1 4.4143 -9.7999 -3.0323 44 1 4.1862 -8.3061 -3.9730 45 1 6.7079 -8.3455 -4.3178 46 1 7.7829 -8.2920 -2.8998 47 1 6.8595 -9.7699 -3.2612 48 1 5.0887 -6.2429 -3.1034 49 1 5.6304 -3.0019 -2.5289 50 1 3.0167 -2.2164 -3.0312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146838981.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:43 Heat of formation + Delta-G solvation = -44.803885 kcal Electronic energy + Delta-G solvation = -30625.797505 eV Core-core repulsion = 26653.234023 eV Total energy + Delta-G solvation = -3972.563482 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.79368 -40.64610 -39.20407 -38.15089 -35.72345 -34.31988 -33.97816 -33.14902 -32.25984 -30.86953 -30.05424 -28.20551 -27.56720 -25.67335 -25.46802 -24.62565 -22.88703 -22.01211 -21.61372 -21.04727 -19.42148 -19.00448 -18.67569 -17.86944 -17.01947 -16.59031 -16.53880 -16.16619 -15.87895 -15.58769 -15.44955 -15.33005 -15.10473 -14.80590 -14.40126 -14.20291 -14.14073 -13.92539 -13.56202 -13.44222 -13.28275 -13.25693 -13.13885 -13.09562 -12.87836 -12.79067 -12.77366 -12.59657 -12.25950 -12.13045 -11.96008 -11.73060 -11.69012 -11.52746 -11.36844 -11.08143 -10.82259 -10.70984 -10.30370 -9.83277 -9.30968 -8.69902 -7.68913 -4.93012 -0.14427 0.34472 1.40848 1.44091 1.47831 1.90875 2.06899 2.45406 2.62829 3.07496 3.46730 3.58568 3.61941 3.77079 3.81497 3.87991 3.96396 4.07683 4.10705 4.19013 4.20210 4.21939 4.42151 4.60069 4.68324 4.70219 4.73562 4.79034 4.83575 4.84924 4.86483 4.90172 4.94194 4.99684 4.99864 5.11626 5.17075 5.19251 5.20991 5.26098 5.39130 5.42604 5.45934 5.65826 5.68348 5.81944 6.27857 6.46683 6.70803 7.08792 7.44027 7.56435 8.30109 8.57175 9.46791 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011675 B = 0.004380 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.685226 B = 6390.459618 C = 8083.167211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.060 3.940 3 C -0.146 4.146 4 O -0.311 6.311 5 C 0.102 3.898 6 C -0.178 4.178 7 C -0.086 4.086 8 C 0.015 3.985 9 C 0.576 3.424 10 O -0.592 6.592 11 N -0.673 5.673 12 C 0.142 3.858 13 H 0.059 0.941 14 C -0.151 4.151 15 C -0.120 4.120 16 C 0.162 3.838 17 H 0.026 0.974 18 C -0.152 4.152 19 N -0.718 5.718 20 C -0.240 4.240 21 H 0.048 0.952 22 C -0.040 4.040 23 N -0.903 5.903 24 Si 0.927 3.073 25 H -0.294 1.294 26 H -0.302 1.302 27 H -0.292 1.292 28 N -0.373 5.373 29 C 0.074 3.926 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.171 0.829 38 H 0.147 0.853 39 H 0.411 0.589 40 H 0.089 0.911 41 H 0.040 0.960 42 H 0.065 0.935 43 H 0.111 0.889 44 H 0.073 0.927 45 H 0.046 0.954 46 H 0.027 0.973 47 H 0.069 0.931 48 H 0.376 0.624 49 H 0.243 0.757 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.168 3.236 1.064 12.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.004 3.996 3 C -0.203 4.203 4 O -0.224 6.224 5 C 0.053 3.947 6 C -0.204 4.204 7 C -0.107 4.107 8 C -0.123 4.123 9 C 0.363 3.637 10 O -0.474 6.474 11 N -0.323 5.323 12 C 0.038 3.962 13 H 0.077 0.923 14 C -0.209 4.209 15 C -0.158 4.158 16 C 0.053 3.947 17 H 0.044 0.956 18 C -0.212 4.212 19 N -0.362 5.362 20 C -0.373 4.373 21 H 0.066 0.934 22 C -0.237 4.237 23 N -0.551 5.551 24 Si 0.761 3.239 25 H -0.222 1.222 26 H -0.229 1.229 27 H -0.219 1.219 28 N -0.083 5.083 29 C -0.090 4.090 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.122 0.878 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.188 0.812 38 H 0.165 0.835 39 H 0.250 0.750 40 H 0.108 0.892 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.129 0.871 44 H 0.092 0.908 45 H 0.066 0.934 46 H 0.046 0.954 47 H 0.087 0.913 48 H 0.211 0.789 49 H 0.053 0.947 50 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -11.900 2.469 0.986 12.193 hybrid contribution 0.795 1.627 1.225 2.187 sum -11.105 4.097 2.211 12.041 Atomic orbital electron populations 1.22355 0.93226 1.03112 1.04425 1.22880 0.95814 0.94419 0.86460 1.21887 1.01570 0.92368 1.04438 1.86108 1.80717 1.15056 1.40485 1.20452 0.94789 0.84211 0.95262 1.21800 1.05129 0.94112 0.99353 1.21986 0.95794 0.94677 0.98228 1.21064 1.03042 0.94485 0.93674 1.17893 0.77090 0.86181 0.82574 1.90639 1.53821 1.67744 1.35205 1.45904 1.58684 1.08008 1.19658 1.21031 0.96059 0.79305 0.99819 0.92325 1.22103 0.95820 1.01708 1.01246 1.22130 0.92510 1.02632 0.98516 1.20476 0.93733 0.84112 0.96374 0.95550 1.22268 0.98861 1.00140 0.99965 1.42471 1.50745 1.00364 1.42588 1.19095 1.17290 0.88985 1.11916 0.93382 1.24965 1.01130 0.96982 1.00598 1.69751 1.40923 1.06616 1.37765 0.85864 0.79397 0.78781 0.79905 1.22167 1.22880 1.21873 1.67587 1.07632 1.07996 1.25117 1.22257 0.99114 0.89023 0.98558 0.91309 0.92507 0.88435 0.90654 0.87826 0.92823 0.91108 0.81159 0.83515 0.75017 0.89243 0.94110 0.91554 0.87124 0.90806 0.93441 0.95374 0.91251 0.78865 0.94698 0.81998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 9.19 71.98 0.66 -2.02 16 2 C 0.06 1.20 2.85 30.59 0.09 1.28 16 3 C -0.15 -2.35 9.56 71.98 0.69 -1.66 16 4 O -0.31 -8.83 9.80 -90.49 -0.89 -9.72 16 5 C 0.10 3.33 6.64 22.75 0.15 3.48 16 6 C -0.18 -5.37 8.34 22.53 0.19 -5.18 16 7 C -0.09 -3.08 9.62 22.58 0.22 -2.86 16 8 C 0.01 0.62 6.74 41.86 0.28 0.90 16 9 C 0.58 25.14 7.77 86.81 0.67 25.81 16 10 O -0.59 -27.56 15.98 -3.86 -0.06 -27.62 16 11 N -0.67 -26.48 3.79 -445.32 -1.69 -28.16 16 12 C 0.14 4.72 2.57 44.99 0.12 4.83 16 13 H 0.06 2.23 7.58 -2.39 -0.02 2.21 16 14 C -0.15 -3.97 9.48 71.98 0.68 -3.29 16 15 C -0.12 -3.51 4.43 30.59 0.14 -3.38 16 16 C 0.16 6.13 2.89 44.99 0.13 6.26 16 17 H 0.03 1.10 8.08 -2.39 -0.02 1.08 16 18 C -0.15 -5.17 9.49 71.98 0.68 -4.48 16 19 N -0.72 -33.82 3.84 -322.93 -1.24 -35.06 16 20 C -0.24 -13.10 9.93 84.03 0.83 -12.27 16 21 H 0.05 2.71 7.83 -2.91 -0.02 2.69 16 22 C -0.04 -2.23 5.50 84.86 0.47 -1.77 16 23 N -0.90 -49.33 11.97 21.65 0.26 -49.07 16 24 Si 0.93 46.85 29.55 68.60 2.03 48.88 16 25 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 26 H -0.30 -15.43 7.11 99.48 0.71 -14.72 16 27 H -0.29 -14.88 7.11 99.48 0.71 -14.17 16 28 N -0.37 -15.58 8.50 -184.52 -1.57 -17.15 16 29 C 0.07 2.78 11.09 85.00 0.94 3.73 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 0.97 6.97 -2.38 -0.02 0.95 16 32 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.48 6.32 -2.39 -0.02 1.46 16 34 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.17 3.81 5.59 -2.91 -0.02 3.79 16 38 H 0.15 4.93 7.63 -2.91 -0.02 4.91 16 39 H 0.41 16.94 5.82 -92.71 -0.54 16.40 16 40 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.38 18.35 5.70 -92.71 -0.53 17.82 16 49 H 0.24 13.35 8.31 -92.71 -0.77 12.58 16 50 H 0.16 5.89 8.06 -2.91 -0.02 5.87 16 Total: -1.00 -66.65 404.58 3.66 -62.99 By element: Atomic # 1 Polarization: 45.65 SS G_CDS: -0.13 Total: 45.52 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 6.94 Total: 9.40 kcal Atomic # 7 Polarization: -125.21 SS G_CDS: -4.24 Total: -129.44 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -0.95 Total: -37.34 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -66.65 3.66 -62.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146838981.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.187 kcal (2) G-P(sol) polarization free energy of solvation -66.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds