Wall clock time and date at job start Tue Mar 31 2020 19:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47178 * 2 1 4 4 O 1.42895 * 109.47161 * 239.99808 * 2 1 3 5 5 C 1.35726 * 117.00304 * 274.74561 * 4 2 1 6 6 C 1.39232 * 120.37911 * 5.36751 * 5 4 2 7 7 C 1.38324 * 118.44307 * 180.02562 * 6 5 4 8 8 C 1.39468 * 119.13311 * 359.97438 * 7 6 5 9 9 C 1.47924 * 119.65485 * 179.97438 * 8 7 6 10 10 O 1.21545 * 120.00075 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99615 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99621 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.47171 * 34.99745 * 12 11 9 14 14 C 1.52998 * 109.46700 * 275.00113 * 12 11 9 15 15 C 1.52998 * 109.47099 * 155.00164 * 12 11 9 16 16 C 1.53001 * 109.47201 * 295.00110 * 15 12 11 17 17 H 1.08999 * 109.46634 * 304.99556 * 16 15 12 18 18 C 1.53002 * 109.47132 * 185.00186 * 16 15 12 19 19 N 1.46498 * 109.47445 * 64.99769 * 16 15 12 20 20 C 1.36929 * 120.00325 * 205.00453 * 19 16 15 21 21 H 1.08001 * 119.99802 * 359.97438 * 20 19 16 22 22 C 1.38810 * 120.00507 * 180.02562 * 20 19 16 23 23 N 1.31618 * 119.99755 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00487 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46986 * 59.99972 * 24 22 20 26 26 H 1.48500 * 109.47190 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47182 * 299.99929 * 24 22 20 28 28 N 1.32800 * 120.68547 * 0.02671 * 8 7 6 29 29 C 1.31377 * 121.69411 * 359.64951 * 28 8 7 30 30 H 1.09007 * 109.47368 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47330 * 300.00284 * 1 2 3 32 32 H 1.09003 * 109.47391 * 60.00084 * 1 2 3 33 33 H 1.09001 * 109.46881 * 119.99833 * 2 1 3 34 34 H 1.09004 * 109.46995 * 60.00188 * 3 2 1 35 35 H 1.09003 * 109.47120 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47078 * 299.99712 * 3 2 1 37 37 H 1.07997 * 120.77482 * 0.02789 * 6 5 4 38 38 H 1.08001 * 120.42947 * 179.97438 * 7 6 5 39 39 H 0.96999 * 120.00262 * 0.02562 * 11 9 8 40 40 H 1.09004 * 109.47271 * 299.99601 * 14 12 11 41 41 H 1.08996 * 109.47520 * 60.00752 * 14 12 11 42 42 H 1.09011 * 109.46908 * 180.02562 * 14 12 11 43 43 H 1.09005 * 109.47172 * 54.99616 * 15 12 11 44 44 H 1.08999 * 109.47027 * 174.99459 * 15 12 11 45 45 H 1.08994 * 109.47435 * 59.99314 * 18 16 15 46 46 H 1.08998 * 109.46953 * 179.97438 * 18 16 15 47 47 H 1.09007 * 109.46811 * 299.99566 * 18 16 15 48 48 H 0.97003 * 120.00097 * 25.00025 * 19 16 15 49 49 H 0.97003 * 120.00578 * 180.02562 * 23 22 20 50 50 H 1.08000 * 119.59872 * 180.31151 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.1174 -2.0245 -1.0961 6 6 1.6719 -2.7097 0.0311 7 6 1.8051 -4.0862 0.0608 8 6 2.3769 -4.7368 -1.0324 9 6 2.5254 -6.2084 -1.0127 10 8 2.1497 -6.8443 -0.0474 11 7 3.0775 -6.8441 -2.0651 12 6 3.2241 -8.3016 -2.0458 13 1 2.3781 -8.7450 -1.5208 14 6 4.5223 -8.6740 -1.3270 15 6 3.2667 -8.8290 -3.4814 16 6 1.9214 -8.5665 -4.1613 17 1 1.1209 -9.0007 -3.5624 18 6 1.9202 -9.2032 -5.5526 19 7 1.7104 -7.1221 -4.2851 20 6 0.4390 -6.6206 -4.3696 21 1 -0.4082 -7.2900 -4.3455 22 6 0.2390 -5.2521 -4.4875 23 7 1.2714 -4.4363 -4.5174 24 14 -1.4954 -4.5681 -4.6035 25 1 -2.2560 -4.9380 -3.3829 26 1 -1.4373 -3.0889 -4.7219 27 1 -2.1716 -5.1335 -5.7985 28 7 2.7902 -4.0487 -2.0904 29 6 2.6724 -2.7417 -2.1527 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.2326 -2.1789 0.8627 38 1 1.4708 -4.6497 0.9193 39 1 3.3777 -6.3366 -2.8354 40 1 5.3685 -8.2307 -1.8520 41 1 4.4920 -8.2984 -0.3042 42 1 4.6317 -9.7585 -1.3130 43 1 4.0576 -8.3198 -4.0323 44 1 3.4646 -9.9008 -3.4691 45 1 2.0773 -10.2778 -5.4605 46 1 0.9617 -9.0165 -6.0367 47 1 2.7209 -8.7690 -6.1515 48 1 2.4713 -6.5208 -4.3071 49 1 1.1318 -3.4799 -4.5994 50 1 3.0155 -2.2165 -3.0319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146838982.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:47 Heat of formation + Delta-G solvation = -27.070584 kcal Electronic energy + Delta-G solvation = -30647.775225 eV Core-core repulsion = 26675.980717 eV Total energy + Delta-G solvation = -3971.794508 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.47342 -39.23527 -37.89561 -36.57203 -34.05774 -33.36861 -32.26446 -31.69552 -30.76726 -29.44552 -28.36135 -27.46317 -26.25003 -24.34520 -23.50682 -23.28543 -21.65495 -20.80438 -20.09376 -19.55733 -18.23025 -17.29837 -17.03238 -16.46927 -15.59164 -15.45966 -14.89473 -14.66892 -14.49422 -14.22830 -13.98255 -13.72498 -13.57581 -13.42492 -13.15308 -12.90539 -12.77767 -12.59178 -12.42615 -12.39131 -12.16541 -12.02531 -11.83308 -11.73211 -11.64196 -11.57060 -11.01432 -10.91100 -10.82732 -10.76144 -10.63830 -10.28776 -10.18165 -9.80868 -9.57822 -9.48342 -9.37320 -8.85867 -8.81880 -8.29131 -7.95067 -6.77728 -5.60324 -2.87196 1.27637 1.69426 3.15759 3.44253 3.48073 3.52019 3.54565 3.88381 4.52326 4.59275 4.68665 4.72658 4.85086 4.90947 4.99495 5.09655 5.21231 5.33522 5.40261 5.46218 5.52321 5.54681 5.59082 5.62533 5.68753 5.70742 5.77733 5.89114 5.97340 6.01745 6.05728 6.10100 6.19078 6.22155 6.32641 6.34770 6.37196 6.44989 6.51778 6.64346 6.71295 6.73353 6.95087 7.14846 7.29468 7.47682 7.82970 8.24624 8.52262 8.57331 9.00981 9.66111 10.21401 10.57306 11.57732 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011743 B = 0.004370 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.784088 B = 6405.341364 C = 7987.483087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.075 3.925 3 C -0.147 4.147 4 O -0.302 6.302 5 C 0.089 3.911 6 C -0.188 4.188 7 C -0.083 4.083 8 C 0.048 3.952 9 C 0.586 3.414 10 O -0.566 6.566 11 N -0.676 5.676 12 C 0.148 3.852 13 H 0.082 0.918 14 C -0.162 4.162 15 C -0.133 4.133 16 C 0.169 3.831 17 H 0.045 0.955 18 C -0.163 4.163 19 N -0.714 5.714 20 C -0.237 4.237 21 H 0.062 0.938 22 C -0.002 4.002 23 N -0.902 5.902 24 Si 0.887 3.113 25 H -0.292 1.292 26 H -0.293 1.293 27 H -0.290 1.290 28 N -0.355 5.355 29 C 0.096 3.904 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.415 0.585 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.033 0.967 46 H 0.051 0.949 47 H 0.044 0.956 48 H 0.381 0.619 49 H 0.250 0.750 50 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.957 4.993 8.856 11.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.018 3.982 3 C -0.204 4.204 4 O -0.215 6.215 5 C 0.040 3.960 6 C -0.214 4.214 7 C -0.104 4.104 8 C -0.090 4.090 9 C 0.372 3.628 10 O -0.446 6.446 11 N -0.328 5.328 12 C 0.043 3.957 13 H 0.100 0.900 14 C -0.220 4.220 15 C -0.172 4.172 16 C 0.059 3.941 17 H 0.063 0.937 18 C -0.223 4.223 19 N -0.358 5.358 20 C -0.368 4.368 21 H 0.080 0.920 22 C -0.199 4.199 23 N -0.549 5.549 24 Si 0.719 3.281 25 H -0.219 1.219 26 H -0.220 1.220 27 H -0.217 1.217 28 N -0.065 5.065 29 C -0.067 4.067 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.255 0.745 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.052 0.948 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.217 0.783 49 H 0.060 0.940 50 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.949 4.236 8.656 11.325 hybrid contribution -1.540 1.356 0.290 2.072 sum 4.409 5.592 8.946 11.434 Atomic orbital electron populations 1.22393 0.95082 1.03407 1.03059 1.22439 0.94418 0.93696 0.87611 1.21843 1.02074 0.93542 1.02977 1.86104 1.80776 1.16189 1.38416 1.20524 0.96191 0.83289 0.95959 1.21507 1.05806 0.95026 0.99066 1.21816 0.95856 0.93566 0.99163 1.20998 1.02029 0.94677 0.91337 1.17593 0.76898 0.85643 0.82640 1.90680 1.51814 1.67091 1.35001 1.45813 1.60194 1.06959 1.19796 1.20840 0.97608 0.81105 0.96180 0.89954 1.22208 0.97827 1.00994 1.00994 1.22209 0.99686 1.00607 0.94693 1.20259 0.93637 0.87070 0.93112 0.93676 1.22428 1.01615 0.97926 1.00345 1.42423 1.05726 0.99794 1.87819 1.18998 0.84709 0.90501 1.42613 0.92040 1.24557 0.95950 0.96124 1.03317 1.69657 1.26984 1.02103 1.56181 0.86582 0.85950 0.77927 0.77594 1.21875 1.21954 1.21672 1.67711 1.12124 1.06464 1.20247 1.22154 0.98936 0.88962 0.96636 0.91672 0.91125 0.91287 0.90967 0.90691 0.91624 0.91373 0.84627 0.84236 0.74488 0.92761 0.92445 0.92159 0.91701 0.90902 0.94755 0.92967 0.93637 0.78334 0.93987 0.82043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 9.19 37.16 0.34 -1.57 16 2 C 0.07 0.81 2.85 -26.73 -0.08 0.74 16 3 C -0.15 -1.24 9.56 37.16 0.36 -0.89 16 4 O -0.30 -4.43 9.80 -18.89 -0.19 -4.61 16 5 C 0.09 1.46 6.64 -38.84 -0.26 1.20 16 6 C -0.19 -2.92 8.34 -39.18 -0.33 -3.25 16 7 C -0.08 -1.48 9.62 -39.09 -0.38 -1.86 16 8 C 0.05 0.97 6.74 -83.02 -0.56 0.41 16 9 C 0.59 12.43 7.77 -12.29 -0.10 12.33 16 10 O -0.57 -12.81 15.98 5.33 0.09 -12.72 16 11 N -0.68 -13.09 3.79 -54.72 -0.21 -13.30 16 12 C 0.15 2.50 2.57 -67.93 -0.17 2.32 16 13 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 14 C -0.16 -2.27 9.48 37.16 0.35 -1.92 16 15 C -0.13 -2.10 4.43 -26.73 -0.12 -2.21 16 16 C 0.17 3.27 2.89 -67.93 -0.20 3.07 16 17 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 18 C -0.16 -2.90 9.49 37.16 0.35 -2.54 16 19 N -0.71 -16.65 3.84 -53.43 -0.21 -16.86 16 20 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 21 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 22 C 0.00 -0.06 5.50 -17.43 -0.10 -0.15 16 23 N -0.90 -24.28 11.95 55.49 0.66 -23.62 16 24 Si 0.89 22.53 29.55 -169.99 -5.02 17.50 16 25 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 26 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 N -0.36 -7.20 8.50 -9.68 -0.08 -7.29 16 29 C 0.10 1.77 11.06 -17.37 -0.19 1.58 16 30 H 0.06 0.79 6.97 -51.93 -0.36 0.42 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.72 6.32 -51.93 -0.33 0.39 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.14 1.68 5.59 -52.49 -0.29 1.39 16 38 H 0.14 2.34 7.63 -52.49 -0.40 1.94 16 39 H 0.42 8.39 5.83 -40.82 -0.24 8.16 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 48 H 0.38 9.19 5.70 -40.82 -0.23 8.96 16 49 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 50 H 0.16 2.84 8.06 -52.49 -0.42 2.41 16 LS Contribution 404.53 15.07 6.10 6.10 Total: -1.00 -30.00 404.53 -8.21 -38.21 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: -8.13 Total: 15.82 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -1.22 Total: 0.77 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: 0.17 Total: -61.06 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.10 Total: -17.34 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.00 -8.21 -38.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146838982.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.141 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds