Wall clock time and date at job start Tue Mar 31 2020 19:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47178 * 2 1 4 4 O 1.42895 * 109.47161 * 239.99808 * 2 1 3 5 5 C 1.35726 * 117.00304 * 274.74561 * 4 2 1 6 6 C 1.39232 * 120.37911 * 5.36751 * 5 4 2 7 7 C 1.38324 * 118.44307 * 180.02562 * 6 5 4 8 8 C 1.39468 * 119.13311 * 359.97438 * 7 6 5 9 9 C 1.47924 * 119.65485 * 179.97438 * 8 7 6 10 10 O 1.21545 * 120.00075 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99615 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99621 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.47171 * 34.99745 * 12 11 9 14 14 C 1.52998 * 109.46700 * 275.00113 * 12 11 9 15 15 C 1.52998 * 109.47099 * 155.00164 * 12 11 9 16 16 C 1.53001 * 109.47201 * 295.00110 * 15 12 11 17 17 H 1.08999 * 109.46634 * 304.99556 * 16 15 12 18 18 C 1.53002 * 109.47132 * 185.00186 * 16 15 12 19 19 N 1.46498 * 109.47445 * 64.99769 * 16 15 12 20 20 C 1.36929 * 120.00325 * 205.00453 * 19 16 15 21 21 H 1.08001 * 119.99802 * 359.97438 * 20 19 16 22 22 C 1.38810 * 120.00507 * 180.02562 * 20 19 16 23 23 N 1.31618 * 119.99755 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00487 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46986 * 59.99972 * 24 22 20 26 26 H 1.48500 * 109.47190 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47182 * 299.99929 * 24 22 20 28 28 N 1.32800 * 120.68547 * 0.02671 * 8 7 6 29 29 C 1.31377 * 121.69411 * 359.64951 * 28 8 7 30 30 H 1.09007 * 109.47368 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47330 * 300.00284 * 1 2 3 32 32 H 1.09003 * 109.47391 * 60.00084 * 1 2 3 33 33 H 1.09001 * 109.46881 * 119.99833 * 2 1 3 34 34 H 1.09004 * 109.46995 * 60.00188 * 3 2 1 35 35 H 1.09003 * 109.47120 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47078 * 299.99712 * 3 2 1 37 37 H 1.07997 * 120.77482 * 0.02789 * 6 5 4 38 38 H 1.08001 * 120.42947 * 179.97438 * 7 6 5 39 39 H 0.96999 * 120.00262 * 0.02562 * 11 9 8 40 40 H 1.09004 * 109.47271 * 299.99601 * 14 12 11 41 41 H 1.08996 * 109.47520 * 60.00752 * 14 12 11 42 42 H 1.09011 * 109.46908 * 180.02562 * 14 12 11 43 43 H 1.09005 * 109.47172 * 54.99616 * 15 12 11 44 44 H 1.08999 * 109.47027 * 174.99459 * 15 12 11 45 45 H 1.08994 * 109.47435 * 59.99314 * 18 16 15 46 46 H 1.08998 * 109.46953 * 179.97438 * 18 16 15 47 47 H 1.09007 * 109.46811 * 299.99566 * 18 16 15 48 48 H 0.97003 * 120.00097 * 25.00025 * 19 16 15 49 49 H 0.97003 * 120.00578 * 180.02562 * 23 22 20 50 50 H 1.08000 * 119.59872 * 180.31151 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.1174 -2.0245 -1.0961 6 6 1.6719 -2.7097 0.0311 7 6 1.8051 -4.0862 0.0608 8 6 2.3769 -4.7368 -1.0324 9 6 2.5254 -6.2084 -1.0127 10 8 2.1497 -6.8443 -0.0474 11 7 3.0775 -6.8441 -2.0651 12 6 3.2241 -8.3016 -2.0458 13 1 2.3781 -8.7450 -1.5208 14 6 4.5223 -8.6740 -1.3270 15 6 3.2667 -8.8290 -3.4814 16 6 1.9214 -8.5665 -4.1613 17 1 1.1209 -9.0007 -3.5624 18 6 1.9202 -9.2032 -5.5526 19 7 1.7104 -7.1221 -4.2851 20 6 0.4390 -6.6206 -4.3696 21 1 -0.4082 -7.2900 -4.3455 22 6 0.2390 -5.2521 -4.4875 23 7 1.2714 -4.4363 -4.5174 24 14 -1.4954 -4.5681 -4.6035 25 1 -2.2560 -4.9380 -3.3829 26 1 -1.4373 -3.0889 -4.7219 27 1 -2.1716 -5.1335 -5.7985 28 7 2.7902 -4.0487 -2.0904 29 6 2.6724 -2.7417 -2.1527 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.2326 -2.1789 0.8627 38 1 1.4708 -4.6497 0.9193 39 1 3.3777 -6.3366 -2.8354 40 1 5.3685 -8.2307 -1.8520 41 1 4.4920 -8.2984 -0.3042 42 1 4.6317 -9.7585 -1.3130 43 1 4.0576 -8.3198 -4.0323 44 1 3.4646 -9.9008 -3.4691 45 1 2.0773 -10.2778 -5.4605 46 1 0.9617 -9.0165 -6.0367 47 1 2.7209 -8.7690 -6.1515 48 1 2.4713 -6.5208 -4.3071 49 1 1.1318 -3.4799 -4.5994 50 1 3.0155 -2.2165 -3.0319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146838982.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:46 Heat of formation + Delta-G solvation = -44.754826 kcal Electronic energy + Delta-G solvation = -30648.542071 eV Core-core repulsion = 26675.980717 eV Total energy + Delta-G solvation = -3972.561354 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.79264 -40.64570 -39.20268 -38.15090 -35.72356 -34.31950 -33.97855 -33.14716 -32.26073 -30.86912 -30.05457 -28.21453 -27.56689 -25.67242 -25.46513 -24.62570 -22.88556 -22.00942 -21.61342 -21.04707 -19.41679 -19.00346 -18.67408 -17.86726 -17.02549 -16.60030 -16.49699 -16.14589 -15.94729 -15.54923 -15.46085 -15.37727 -14.99139 -14.88604 -14.42888 -14.21261 -14.07128 -13.91853 -13.54732 -13.42701 -13.35461 -13.26844 -13.12757 -13.09806 -12.88293 -12.80267 -12.76630 -12.59553 -12.25815 -12.14794 -11.94815 -11.73722 -11.68627 -11.52361 -11.36869 -11.08330 -10.82445 -10.71131 -10.29708 -9.83334 -9.30769 -8.69931 -7.68846 -4.92835 -0.14167 0.34554 1.41508 1.43766 1.46706 1.91328 2.07526 2.44717 2.62851 3.06622 3.47665 3.58574 3.62553 3.77359 3.81158 3.88106 3.95935 4.07661 4.10679 4.19295 4.20430 4.21993 4.42146 4.60053 4.64380 4.69936 4.73258 4.78074 4.84068 4.86358 4.86537 4.90171 4.94198 4.99734 5.00174 5.11633 5.17054 5.19102 5.20086 5.26745 5.39151 5.42960 5.45973 5.65768 5.68128 5.81925 6.28501 6.46705 6.70849 7.08922 7.44049 7.56512 8.30258 8.57340 9.46712 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011743 B = 0.004370 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.784088 B = 6405.341364 C = 7987.483087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.063 3.937 3 C -0.143 4.143 4 O -0.311 6.311 5 C 0.102 3.898 6 C -0.178 4.178 7 C -0.086 4.086 8 C 0.015 3.985 9 C 0.576 3.424 10 O -0.592 6.592 11 N -0.673 5.673 12 C 0.142 3.858 13 H 0.058 0.942 14 C -0.151 4.151 15 C -0.120 4.120 16 C 0.162 3.838 17 H 0.026 0.974 18 C -0.152 4.152 19 N -0.718 5.718 20 C -0.242 4.242 21 H 0.048 0.952 22 C -0.039 4.039 23 N -0.902 5.902 24 Si 0.926 3.074 25 H -0.301 1.301 26 H -0.297 1.297 27 H -0.289 1.289 28 N -0.373 5.373 29 C 0.074 3.926 30 H 0.046 0.954 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.171 0.829 38 H 0.147 0.853 39 H 0.411 0.589 40 H 0.066 0.934 41 H 0.040 0.960 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.111 0.889 45 H 0.069 0.931 46 H 0.027 0.973 47 H 0.047 0.953 48 H 0.376 0.624 49 H 0.244 0.756 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.694 5.316 9.667 12.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.007 3.993 3 C -0.200 4.200 4 O -0.224 6.224 5 C 0.053 3.947 6 C -0.204 4.204 7 C -0.107 4.107 8 C -0.123 4.123 9 C 0.362 3.638 10 O -0.474 6.474 11 N -0.323 5.323 12 C 0.038 3.962 13 H 0.077 0.923 14 C -0.209 4.209 15 C -0.158 4.158 16 C 0.053 3.947 17 H 0.044 0.956 18 C -0.212 4.212 19 N -0.361 5.361 20 C -0.374 4.374 21 H 0.066 0.934 22 C -0.236 4.236 23 N -0.550 5.550 24 Si 0.759 3.241 25 H -0.229 1.229 26 H -0.223 1.223 27 H -0.216 1.216 28 N -0.084 5.084 29 C -0.089 4.089 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.121 0.879 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.189 0.811 38 H 0.164 0.836 39 H 0.250 0.750 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.129 0.871 45 H 0.087 0.913 46 H 0.046 0.954 47 H 0.066 0.934 48 H 0.211 0.789 49 H 0.053 0.947 50 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.699 4.532 9.452 12.440 hybrid contribution -1.803 1.325 0.067 2.239 sum 4.896 5.857 9.519 12.202 Atomic orbital electron populations 1.22411 0.94690 1.02555 1.04193 1.22874 0.94818 0.94850 0.86736 1.21876 1.02171 0.91827 1.04138 1.86123 1.80536 1.15040 1.40685 1.20448 0.94648 0.84278 0.95329 1.21795 1.04768 0.94118 0.99683 1.21986 0.95395 0.94661 0.98686 1.21063 1.04182 0.94474 0.92560 1.17896 0.76802 0.86320 0.82733 1.90639 1.53199 1.67740 1.35859 1.45905 1.59364 1.07996 1.18984 1.21031 0.98327 0.79657 0.97202 0.92348 1.22102 0.96305 1.02890 0.99572 1.22129 0.97459 1.02970 0.93220 1.20475 0.95223 0.84777 0.94219 0.95569 1.22267 1.00327 1.00027 0.98603 1.42455 1.04236 1.01560 1.87881 1.19059 0.85838 0.90457 1.42075 0.93405 1.24950 0.97667 0.96596 1.04352 1.69736 1.27130 1.01532 1.56616 0.85969 0.84059 0.77127 0.76916 1.22933 1.22311 1.21594 1.67590 1.12790 1.07351 1.20625 1.22255 1.00150 0.88839 0.97653 0.93445 0.88047 0.92188 0.89464 0.87865 0.91530 0.91863 0.81132 0.83566 0.75013 0.91538 0.94111 0.89246 0.90793 0.87125 0.91251 0.95403 0.93432 0.78860 0.94668 0.82014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.39 9.19 71.98 0.66 -2.73 16 2 C 0.06 1.21 2.85 30.59 0.09 1.30 16 3 C -0.14 -2.02 9.56 71.98 0.69 -1.34 16 4 O -0.31 -8.76 9.80 -90.49 -0.89 -9.65 16 5 C 0.10 3.31 6.64 22.75 0.15 3.46 16 6 C -0.18 -5.34 8.34 22.53 0.19 -5.15 16 7 C -0.09 -3.09 9.62 22.59 0.22 -2.88 16 8 C 0.01 0.61 6.74 41.86 0.28 0.89 16 9 C 0.58 25.18 7.77 86.81 0.67 25.85 16 10 O -0.59 -27.64 15.98 -3.86 -0.06 -27.71 16 11 N -0.67 -26.50 3.79 -445.33 -1.69 -28.19 16 12 C 0.14 4.72 2.57 44.99 0.12 4.84 16 13 H 0.06 2.23 7.58 -2.39 -0.02 2.21 16 14 C -0.15 -3.97 9.48 71.98 0.68 -3.29 16 15 C -0.12 -3.51 4.43 30.59 0.14 -3.38 16 16 C 0.16 6.14 2.89 44.99 0.13 6.27 16 17 H 0.03 1.09 8.08 -2.39 -0.02 1.08 16 18 C -0.15 -5.17 9.49 71.98 0.68 -4.49 16 19 N -0.72 -33.85 3.84 -322.95 -1.24 -35.09 16 20 C -0.24 -13.21 9.93 84.03 0.83 -12.38 16 21 H 0.05 2.70 7.83 -2.91 -0.02 2.68 16 22 C -0.04 -2.17 5.50 84.86 0.47 -1.71 16 23 N -0.90 -49.39 11.95 21.65 0.26 -49.13 16 24 Si 0.93 47.00 29.55 68.60 2.03 49.03 16 25 H -0.30 -15.65 7.11 99.48 0.71 -14.94 16 26 H -0.30 -15.10 7.11 99.48 0.71 -14.40 16 27 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 28 N -0.37 -15.57 8.50 -184.53 -1.57 -17.14 16 29 C 0.07 2.80 11.06 85.00 0.94 3.74 16 30 H 0.05 1.06 6.97 -2.38 -0.02 1.04 16 31 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.45 6.32 -2.39 -0.02 1.43 16 34 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.17 3.78 5.59 -2.91 -0.02 3.77 16 38 H 0.15 4.93 7.63 -2.91 -0.02 4.91 16 39 H 0.41 16.94 5.83 -92.71 -0.54 16.40 16 40 H 0.07 1.59 8.14 -2.38 -0.02 1.58 16 41 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 44 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.05 1.58 8.14 -2.38 -0.02 1.57 16 48 H 0.38 18.37 5.70 -92.71 -0.53 17.84 16 49 H 0.24 13.42 8.31 -92.71 -0.77 12.65 16 50 H 0.16 5.88 8.06 -2.91 -0.02 5.86 16 Total: -1.00 -66.99 404.53 3.65 -63.34 By element: Atomic # 1 Polarization: 45.63 SS G_CDS: -0.13 Total: 45.50 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 6.94 Total: 9.02 kcal Atomic # 7 Polarization: -125.31 SS G_CDS: -4.24 Total: -129.54 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -0.95 Total: -37.35 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -66.99 3.65 -63.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146838982.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.588 kcal (2) G-P(sol) polarization free energy of solvation -66.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds