Wall clock time and date at job start Tue Mar 31 2020 19:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47148 * 2 1 4 4 O 1.42903 * 109.47301 * 119.99939 * 2 1 3 5 5 C 1.35716 * 116.99262 * 85.24974 * 4 2 1 6 6 C 1.39229 * 120.38858 * 354.63690 * 5 4 2 7 7 C 1.38324 * 118.44572 * 180.02562 * 6 5 4 8 8 C 1.39459 * 119.13539 * 359.97438 * 7 6 5 9 9 C 1.47932 * 119.66109 * 179.97438 * 8 7 6 10 10 O 1.21540 * 119.99543 * 0.02562 * 9 8 7 11 11 N 1.34771 * 119.99973 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99642 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.46843 * 325.00043 * 12 11 9 14 14 C 1.53001 * 109.47122 * 85.00320 * 12 11 9 15 15 C 1.52999 * 109.46794 * 205.00269 * 12 11 9 16 16 C 1.52997 * 109.47411 * 65.00138 * 15 12 11 17 17 H 1.09001 * 109.46873 * 304.99907 * 16 15 12 18 18 C 1.53001 * 109.47175 * 184.99600 * 16 15 12 19 19 N 1.46502 * 109.47365 * 64.99849 * 16 15 12 20 20 C 1.36930 * 120.00042 * 205.00334 * 19 16 15 21 21 H 1.07993 * 120.00006 * 359.97438 * 20 19 16 22 22 C 1.38817 * 119.99578 * 179.72223 * 20 19 16 23 23 N 1.31624 * 119.99747 * 180.27396 * 22 20 19 24 24 Si 1.86798 * 120.00367 * 0.27400 * 22 20 19 25 25 H 1.48502 * 109.47006 * 89.99939 * 24 22 20 26 26 H 1.48502 * 109.46935 * 210.00101 * 24 22 20 27 27 H 1.48499 * 109.46976 * 329.99836 * 24 22 20 28 28 N 1.32800 * 120.68405 * 0.26483 * 8 7 6 29 29 C 1.31381 * 121.69397 * 359.46333 * 28 8 7 30 30 H 1.09004 * 109.46709 * 59.99592 * 1 2 3 31 31 H 1.08998 * 109.46862 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46954 * 299.99876 * 1 2 3 33 33 H 1.09004 * 109.47471 * 240.00659 * 2 1 3 34 34 H 1.09006 * 109.47248 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47474 * 300.00011 * 3 2 1 36 36 H 1.09005 * 109.46679 * 60.00470 * 3 2 1 37 37 H 1.07996 * 120.77789 * 359.97438 * 6 5 4 38 38 H 1.08009 * 120.43109 * 180.02562 * 7 6 5 39 39 H 0.96997 * 120.00162 * 0.02562 * 11 9 8 40 40 H 1.08997 * 109.46996 * 179.97438 * 14 12 11 41 41 H 1.09000 * 109.46999 * 299.99709 * 14 12 11 42 42 H 1.08996 * 109.46879 * 59.99885 * 14 12 11 43 43 H 1.08999 * 109.47159 * 304.99786 * 15 12 11 44 44 H 1.09008 * 109.46909 * 185.00155 * 15 12 11 45 45 H 1.09004 * 109.47068 * 60.00399 * 18 16 15 46 46 H 1.08998 * 109.46896 * 179.97438 * 18 16 15 47 47 H 1.08995 * 109.47074 * 300.00078 * 18 16 15 48 48 H 0.97006 * 119.99482 * 24.99629 * 19 16 15 49 49 H 0.96999 * 120.00224 * 180.02562 * 23 22 20 50 50 H 1.07999 * 119.59695 * 180.24279 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.1173 -2.0244 1.0961 6 6 1.6718 -2.7096 -0.0311 7 6 1.8040 -4.0862 -0.0603 8 6 2.3756 -4.7368 1.0328 9 6 2.5221 -6.2087 1.0141 10 8 2.1454 -6.8446 0.0492 11 7 3.0731 -6.8445 2.0669 12 6 3.2186 -8.3022 2.0481 13 1 2.3724 -8.7450 1.5228 14 6 4.5169 -8.6759 1.3301 15 6 3.2600 -8.8291 3.4839 16 6 1.9146 -8.5654 4.1630 17 1 1.6758 -7.5039 4.0963 18 6 1.9961 -8.9784 5.6340 19 7 0.8691 -9.3440 3.4945 20 6 -0.4343 -8.9278 3.5475 21 1 -0.6916 -8.0257 4.0826 22 6 -1.4240 -9.6625 2.9092 23 7 -2.6762 -9.2595 2.9556 24 14 -0.9789 -11.2232 1.9842 25 1 -1.0585 -12.3847 2.9061 26 1 -1.9274 -11.4189 0.8584 27 1 0.4028 -11.1066 1.4528 28 7 2.7847 -4.0492 2.0927 29 6 2.6783 -2.7410 2.1499 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5137 -0.8901 34 1 3.1301 1.4426 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 1.2326 -2.1789 -0.8628 38 1 1.4695 -4.6498 -0.9189 39 1 3.3733 -6.3370 2.8371 40 1 4.6254 -9.7604 1.3165 41 1 4.4874 -8.3005 0.3072 42 1 5.3630 -8.2330 1.8554 43 1 4.0510 -8.3204 4.0350 44 1 3.4571 -9.9012 3.4720 45 1 2.7739 -8.3990 6.1315 46 1 1.0377 -8.7901 6.1178 47 1 2.2349 -10.0398 5.7006 48 1 1.1003 -10.1545 3.0141 49 1 -3.3679 -9.7730 2.5099 50 1 3.0256 -2.2154 3.0271 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146838983.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:50 Heat of formation + Delta-G solvation = -36.012073 kcal Electronic energy + Delta-G solvation = -29274.987165 eV Core-core repulsion = 25302.804925 eV Total energy + Delta-G solvation = -3972.182240 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.06483 -39.65414 -38.38739 -36.83615 -34.53303 -33.75695 -32.56786 -32.03387 -31.14885 -29.90320 -29.12578 -27.75483 -26.35159 -24.89924 -23.87378 -23.22755 -22.07185 -21.16112 -20.31905 -19.71964 -18.76494 -17.99620 -17.41800 -17.02965 -15.97445 -15.77822 -15.31784 -15.00000 -14.80637 -14.62998 -14.34670 -14.10623 -13.92934 -13.66417 -13.53502 -13.25349 -13.02364 -12.81443 -12.72996 -12.63181 -12.54138 -12.33893 -12.24773 -12.01116 -11.90874 -11.63442 -11.42095 -11.23070 -11.15049 -10.87017 -10.59873 -10.42145 -10.20790 -10.11011 -10.01193 -9.87917 -9.56269 -9.48839 -8.83257 -8.77111 -8.53822 -7.16197 -5.66907 -3.01189 0.65318 1.00760 2.67301 2.90339 3.38320 3.45976 3.48974 3.53416 3.89004 4.17868 4.23637 4.37856 4.41896 4.55697 4.65545 4.69099 4.89390 4.93690 5.07965 5.08958 5.23771 5.28024 5.30001 5.33061 5.38844 5.57932 5.59970 5.60724 5.64957 5.72121 5.77862 5.82767 5.84669 5.89523 5.95502 6.09110 6.12018 6.26615 6.31505 6.40124 6.51249 6.61173 6.82808 6.90324 6.93005 7.06932 7.55957 7.91387 8.09342 8.51959 8.53149 9.31089 10.03941 10.23511 11.51885 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012513 B = 0.002911 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.072358 B = 9616.543974 C =10446.219577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.073 3.927 3 C -0.148 4.148 4 O -0.300 6.300 5 C 0.101 3.899 6 C -0.178 4.178 7 C -0.067 4.067 8 C 0.045 3.955 9 C 0.576 3.424 10 O -0.532 6.532 11 N -0.696 5.696 12 C 0.141 3.859 13 H 0.101 0.899 14 C -0.161 4.161 15 C -0.134 4.134 16 C 0.175 3.825 17 H 0.056 0.944 18 C -0.165 4.165 19 N -0.745 5.745 20 C -0.234 4.234 21 H 0.087 0.913 22 C 0.003 3.997 23 N -0.937 5.937 24 Si 0.883 3.117 25 H -0.286 1.286 26 H -0.293 1.293 27 H -0.276 1.276 28 N -0.417 5.417 29 C 0.074 3.926 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.406 0.594 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.038 0.962 46 H 0.056 0.944 47 H 0.044 0.956 48 H 0.359 0.641 49 H 0.257 0.743 50 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.187 18.911 -5.352 24.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.017 3.983 3 C -0.205 4.205 4 O -0.213 6.213 5 C 0.053 3.947 6 C -0.204 4.204 7 C -0.087 4.087 8 C -0.093 4.093 9 C 0.361 3.639 10 O -0.409 6.409 11 N -0.347 5.347 12 C 0.037 3.963 13 H 0.119 0.881 14 C -0.220 4.220 15 C -0.173 4.173 16 C 0.066 3.934 17 H 0.074 0.926 18 C -0.225 4.225 19 N -0.389 5.389 20 C -0.364 4.364 21 H 0.105 0.895 22 C -0.192 4.192 23 N -0.585 5.585 24 Si 0.713 3.287 25 H -0.213 1.213 26 H -0.219 1.219 27 H -0.202 1.202 28 N -0.129 5.129 29 C -0.088 4.088 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.163 0.837 38 H 0.169 0.831 39 H 0.241 0.759 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.057 0.943 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.192 0.808 49 H 0.067 0.933 50 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 15.100 18.215 -5.168 24.217 hybrid contribution -0.338 -0.447 -1.175 1.302 sum 14.762 17.768 -6.342 23.955 Atomic orbital electron populations 1.22412 0.94564 1.03561 1.03534 1.22561 0.94739 0.93861 0.87104 1.21862 1.02161 0.93203 1.03320 1.86109 1.80472 1.15622 1.39053 1.20405 0.95087 0.83808 0.95431 1.21723 1.04580 0.95014 0.99079 1.21971 0.94065 0.93653 0.99048 1.21135 1.01754 0.94746 0.91669 1.17620 0.77687 0.85272 0.83359 1.90793 1.49470 1.66468 1.34125 1.45759 1.61298 1.07964 1.19640 1.21062 0.98743 0.79464 0.97050 0.88148 1.22190 0.97379 1.01506 1.00895 1.22213 0.99017 1.01554 0.94493 1.20214 0.86780 0.96050 0.90362 0.92601 1.22408 1.00807 1.00283 0.98968 1.42779 1.04358 1.28369 1.63356 1.19019 0.81834 1.07849 1.27715 0.89487 1.24642 0.95231 0.98755 1.00589 1.69702 0.99495 1.40505 1.48798 0.86561 0.77557 0.84615 0.79918 1.21326 1.21906 1.20202 1.67584 1.13704 1.07462 1.24147 1.22211 0.99944 0.88744 0.97914 0.90705 0.91574 0.91077 0.90686 0.91544 0.90326 0.91231 0.83660 0.83088 0.75875 0.91800 0.92421 0.92816 0.91412 0.90704 0.94301 0.92459 0.93672 0.80789 0.93252 0.81383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 9.19 37.16 0.34 -0.86 16 2 C 0.07 0.50 2.85 -26.73 -0.08 0.43 16 3 C -0.15 -0.74 9.56 37.16 0.36 -0.39 16 4 O -0.30 -2.87 9.80 -18.85 -0.18 -3.05 16 5 C 0.10 1.10 6.63 -38.84 -0.26 0.85 16 6 C -0.18 -1.92 8.34 -39.18 -0.33 -2.25 16 7 C -0.07 -0.90 9.62 -39.10 -0.38 -1.27 16 8 C 0.04 0.69 6.74 -83.02 -0.56 0.13 16 9 C 0.58 10.32 7.77 -12.29 -0.10 10.23 16 10 O -0.53 -11.23 15.98 5.33 0.09 -11.14 16 11 N -0.70 -11.16 4.44 -54.72 -0.24 -11.40 16 12 C 0.14 2.30 2.52 -67.93 -0.17 2.13 16 13 H 0.10 2.07 7.05 -51.93 -0.37 1.71 16 14 C -0.16 -2.19 9.48 37.16 0.35 -1.83 16 15 C -0.13 -2.02 4.29 -26.73 -0.11 -2.14 16 16 C 0.18 3.34 2.84 -67.93 -0.19 3.15 16 17 H 0.06 1.14 7.56 -51.93 -0.39 0.75 16 18 C -0.16 -2.87 9.49 37.16 0.35 -2.52 16 19 N -0.75 -17.79 4.30 -53.43 -0.23 -18.02 16 20 C -0.23 -6.76 10.41 -15.06 -0.16 -6.92 16 21 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 22 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 23 N -0.94 -30.38 13.97 55.49 0.78 -29.60 16 24 Si 0.88 23.11 27.74 -169.99 -4.72 18.39 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 27 H -0.28 -6.83 6.51 56.52 0.37 -6.46 16 28 N -0.42 -5.79 9.53 -9.67 -0.09 -5.88 16 29 C 0.07 0.86 11.14 -17.37 -0.19 0.67 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.52 6.97 -51.93 -0.36 0.15 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.45 6.32 -51.93 -0.33 0.13 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.15 1.17 5.59 -52.49 -0.29 0.88 16 38 H 0.15 1.99 7.63 -52.48 -0.40 1.59 16 39 H 0.41 5.76 7.92 -40.82 -0.32 5.43 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 45 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.36 8.52 5.66 -40.82 -0.23 8.28 16 49 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 50 H 0.17 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 407.82 15.07 6.15 6.15 Total: -1.00 -35.28 407.82 -7.88 -43.16 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -8.21 Total: 12.01 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -1.21 Total: -0.60 kcal Atomic # 7 Polarization: -65.13 SS G_CDS: 0.21 Total: -64.91 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.10 Total: -14.19 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.72 Total: 18.39 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.28 -7.88 -43.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146838983.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.153 kcal (2) G-P(sol) polarization free energy of solvation -35.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds