Wall clock time and date at job start Tue Mar 31 2020 19:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47148 * 2 1 4 4 O 1.42903 * 109.47301 * 119.99939 * 2 1 3 5 5 C 1.35716 * 116.99262 * 85.24974 * 4 2 1 6 6 C 1.39229 * 120.38858 * 354.63690 * 5 4 2 7 7 C 1.38324 * 118.44572 * 180.02562 * 6 5 4 8 8 C 1.39459 * 119.13539 * 359.97438 * 7 6 5 9 9 C 1.47932 * 119.66109 * 179.97438 * 8 7 6 10 10 O 1.21540 * 119.99543 * 0.02562 * 9 8 7 11 11 N 1.34771 * 119.99973 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99642 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.46843 * 325.00043 * 12 11 9 14 14 C 1.53001 * 109.47122 * 85.00320 * 12 11 9 15 15 C 1.52999 * 109.46794 * 205.00269 * 12 11 9 16 16 C 1.52997 * 109.47411 * 65.00138 * 15 12 11 17 17 H 1.09001 * 109.46873 * 304.99907 * 16 15 12 18 18 C 1.53001 * 109.47175 * 184.99600 * 16 15 12 19 19 N 1.46502 * 109.47365 * 64.99849 * 16 15 12 20 20 C 1.36930 * 120.00042 * 205.00334 * 19 16 15 21 21 H 1.07993 * 120.00006 * 359.97438 * 20 19 16 22 22 C 1.38817 * 119.99578 * 179.72223 * 20 19 16 23 23 N 1.31624 * 119.99747 * 180.27396 * 22 20 19 24 24 Si 1.86798 * 120.00367 * 0.27400 * 22 20 19 25 25 H 1.48502 * 109.47006 * 89.99939 * 24 22 20 26 26 H 1.48502 * 109.46935 * 210.00101 * 24 22 20 27 27 H 1.48499 * 109.46976 * 329.99836 * 24 22 20 28 28 N 1.32800 * 120.68405 * 0.26483 * 8 7 6 29 29 C 1.31381 * 121.69397 * 359.46333 * 28 8 7 30 30 H 1.09004 * 109.46709 * 59.99592 * 1 2 3 31 31 H 1.08998 * 109.46862 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46954 * 299.99876 * 1 2 3 33 33 H 1.09004 * 109.47471 * 240.00659 * 2 1 3 34 34 H 1.09006 * 109.47248 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47474 * 300.00011 * 3 2 1 36 36 H 1.09005 * 109.46679 * 60.00470 * 3 2 1 37 37 H 1.07996 * 120.77789 * 359.97438 * 6 5 4 38 38 H 1.08009 * 120.43109 * 180.02562 * 7 6 5 39 39 H 0.96997 * 120.00162 * 0.02562 * 11 9 8 40 40 H 1.08997 * 109.46996 * 179.97438 * 14 12 11 41 41 H 1.09000 * 109.46999 * 299.99709 * 14 12 11 42 42 H 1.08996 * 109.46879 * 59.99885 * 14 12 11 43 43 H 1.08999 * 109.47159 * 304.99786 * 15 12 11 44 44 H 1.09008 * 109.46909 * 185.00155 * 15 12 11 45 45 H 1.09004 * 109.47068 * 60.00399 * 18 16 15 46 46 H 1.08998 * 109.46896 * 179.97438 * 18 16 15 47 47 H 1.08995 * 109.47074 * 300.00078 * 18 16 15 48 48 H 0.97006 * 119.99482 * 24.99629 * 19 16 15 49 49 H 0.96999 * 120.00224 * 180.02562 * 23 22 20 50 50 H 1.07999 * 119.59695 * 180.24279 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.1173 -2.0244 1.0961 6 6 1.6718 -2.7096 -0.0311 7 6 1.8040 -4.0862 -0.0603 8 6 2.3756 -4.7368 1.0328 9 6 2.5221 -6.2087 1.0141 10 8 2.1454 -6.8446 0.0492 11 7 3.0731 -6.8445 2.0669 12 6 3.2186 -8.3022 2.0481 13 1 2.3724 -8.7450 1.5228 14 6 4.5169 -8.6759 1.3301 15 6 3.2600 -8.8291 3.4839 16 6 1.9146 -8.5654 4.1630 17 1 1.6758 -7.5039 4.0963 18 6 1.9961 -8.9784 5.6340 19 7 0.8691 -9.3440 3.4945 20 6 -0.4343 -8.9278 3.5475 21 1 -0.6916 -8.0257 4.0826 22 6 -1.4240 -9.6625 2.9092 23 7 -2.6762 -9.2595 2.9556 24 14 -0.9789 -11.2232 1.9842 25 1 -1.0585 -12.3847 2.9061 26 1 -1.9274 -11.4189 0.8584 27 1 0.4028 -11.1066 1.4528 28 7 2.7847 -4.0492 2.0927 29 6 2.6783 -2.7410 2.1499 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5137 -0.8901 34 1 3.1301 1.4426 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 1.2326 -2.1789 -0.8628 38 1 1.4695 -4.6498 -0.9189 39 1 3.3733 -6.3370 2.8371 40 1 4.6254 -9.7604 1.3165 41 1 4.4874 -8.3005 0.3072 42 1 5.3630 -8.2330 1.8554 43 1 4.0510 -8.3204 4.0350 44 1 3.4571 -9.9012 3.4720 45 1 2.7739 -8.3990 6.1315 46 1 1.0377 -8.7901 6.1178 47 1 2.2349 -10.0398 5.7006 48 1 1.1003 -10.1545 3.0141 49 1 -3.3679 -9.7730 2.5099 50 1 3.0256 -2.2154 3.0271 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146838983.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:49 Heat of formation + Delta-G solvation = -60.755695 kcal Electronic energy + Delta-G solvation = -29276.060129 eV Core-core repulsion = 25302.804925 eV Total energy + Delta-G solvation = -3973.255204 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.01865 -40.80392 -39.38741 -38.34958 -36.16677 -34.39094 -34.10789 -33.44949 -32.45416 -31.23772 -30.70340 -28.21461 -27.61626 -25.90431 -25.34424 -24.80682 -23.02747 -22.21048 -21.62731 -21.23193 -19.83370 -19.53723 -18.87059 -18.05648 -17.12640 -16.74132 -16.57987 -16.31382 -16.16048 -15.82058 -15.64448 -15.26218 -15.10451 -15.05406 -14.64378 -14.54751 -14.23266 -14.10408 -13.99529 -13.56764 -13.44129 -13.39345 -13.21574 -13.14062 -12.99757 -12.86335 -12.80855 -12.64083 -12.38922 -12.01600 -11.99772 -11.87344 -11.77612 -11.69183 -11.45467 -11.32809 -10.97256 -10.96719 -10.71923 -10.06544 -9.51916 -9.26977 -8.01211 -5.31499 -0.39237 0.06635 1.33863 1.39087 1.44754 1.69846 1.93478 2.18561 2.48461 2.77161 3.14326 3.31268 3.46260 3.65415 3.66458 3.75429 3.82232 3.91434 3.96113 3.98113 4.08436 4.12215 4.34739 4.51124 4.60688 4.65986 4.66755 4.71585 4.76627 4.77015 4.82439 4.84710 4.86397 4.88669 4.90214 5.00684 5.07918 5.19243 5.20786 5.24136 5.28117 5.32691 5.37723 5.59169 5.60676 5.79570 6.11579 6.23610 6.44207 6.74771 7.11153 7.23303 7.89413 8.06677 9.21228 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012513 B = 0.002911 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.072358 B = 9616.543974 C =10446.219577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.063 3.937 3 C -0.145 4.145 4 O -0.303 6.303 5 C 0.114 3.886 6 C -0.171 4.171 7 C -0.076 4.076 8 C 0.013 3.987 9 C 0.566 3.434 10 O -0.578 6.578 11 N -0.688 5.688 12 C 0.138 3.862 13 H 0.052 0.948 14 C -0.151 4.151 15 C -0.121 4.121 16 C 0.166 3.834 17 H 0.036 0.964 18 C -0.156 4.156 19 N -0.748 5.748 20 C -0.213 4.213 21 H 0.049 0.951 22 C -0.070 4.070 23 N -0.988 5.988 24 Si 0.951 3.049 25 H -0.274 1.274 26 H -0.302 1.302 27 H -0.255 1.255 28 N -0.426 5.426 29 C 0.069 3.931 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.173 0.827 38 H 0.145 0.855 39 H 0.415 0.585 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.025 0.975 47 H 0.054 0.946 48 H 0.363 0.637 49 H 0.255 0.745 50 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.055 19.816 -5.165 27.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.008 3.992 3 C -0.202 4.202 4 O -0.215 6.215 5 C 0.064 3.936 6 C -0.197 4.197 7 C -0.097 4.097 8 C -0.123 4.123 9 C 0.353 3.647 10 O -0.458 6.458 11 N -0.339 5.339 12 C 0.033 3.967 13 H 0.071 0.929 14 C -0.209 4.209 15 C -0.159 4.159 16 C 0.059 3.941 17 H 0.054 0.946 18 C -0.215 4.215 19 N -0.391 5.391 20 C -0.345 4.345 21 H 0.067 0.933 22 C -0.260 4.260 23 N -0.640 5.640 24 Si 0.779 3.221 25 H -0.200 1.200 26 H -0.229 1.229 27 H -0.180 1.180 28 N -0.138 5.138 29 C -0.094 4.094 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.191 0.809 38 H 0.163 0.837 39 H 0.252 0.748 40 H 0.097 0.903 41 H 0.058 0.942 42 H 0.099 0.901 43 H 0.127 0.873 44 H 0.110 0.890 45 H 0.096 0.904 46 H 0.044 0.956 47 H 0.074 0.926 48 H 0.196 0.804 49 H 0.063 0.937 50 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 18.048 19.132 -4.934 26.761 hybrid contribution -1.223 -0.450 -1.160 1.745 sum 16.825 18.682 -6.094 25.870 Atomic orbital electron populations 1.22427 0.94353 1.02842 1.04424 1.22902 0.94978 0.94800 0.86507 1.21890 1.02225 0.91849 1.04260 1.86134 1.80096 1.14608 1.40634 1.20443 0.93657 0.84602 0.94889 1.21946 1.03891 0.93873 0.99986 1.22021 0.94307 0.94879 0.98518 1.20891 1.04502 0.93650 0.93275 1.18101 0.77063 0.86516 0.83063 1.90747 1.51568 1.67720 1.35739 1.45750 1.60562 1.08084 1.19462 1.21047 0.98492 0.79320 0.97791 0.92928 1.22092 0.96466 1.02620 0.99728 1.22146 0.97278 1.03099 0.93371 1.20492 0.87617 0.94351 0.91672 0.94574 1.22265 1.00493 1.01582 0.97189 1.42799 1.03468 1.28964 1.63900 1.18942 0.84183 1.05895 1.25450 0.93259 1.25458 0.95144 1.02814 1.02633 1.69888 1.00803 1.42446 1.50847 0.85450 0.77940 0.80443 0.78242 1.19975 1.22921 1.17981 1.67513 1.14077 1.08538 1.23642 1.22681 0.99528 0.88142 0.99017 0.88562 0.93045 0.91547 0.89536 0.91461 0.88246 0.91461 0.80930 0.83728 0.74777 0.90253 0.94216 0.90130 0.87344 0.89012 0.90412 0.95609 0.92647 0.80404 0.93675 0.78778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 9.19 71.98 0.66 -1.40 16 2 C 0.06 0.72 2.85 30.60 0.09 0.81 16 3 C -0.15 -1.08 9.56 71.98 0.69 -0.39 16 4 O -0.30 -5.17 9.80 -90.38 -0.89 -6.06 16 5 C 0.11 2.32 6.63 22.75 0.15 2.47 16 6 C -0.17 -3.56 8.34 22.53 0.19 -3.37 16 7 C -0.08 -2.12 9.62 22.58 0.22 -1.90 16 8 C 0.01 0.42 6.74 41.86 0.28 0.70 16 9 C 0.57 21.19 7.77 86.81 0.67 21.87 16 10 O -0.58 -25.84 15.98 -3.84 -0.06 -25.90 16 11 N -0.69 -22.14 4.44 -445.32 -1.98 -24.12 16 12 C 0.14 4.38 2.52 44.99 0.11 4.49 16 13 H 0.05 2.21 7.05 -2.39 -0.02 2.19 16 14 C -0.15 -3.79 9.48 71.98 0.68 -3.11 16 15 C -0.12 -3.29 4.29 30.59 0.13 -3.16 16 16 C 0.17 6.16 2.84 44.99 0.13 6.29 16 17 H 0.04 1.48 7.56 -2.39 -0.02 1.47 16 18 C -0.16 -5.10 9.49 71.98 0.68 -4.42 16 19 N -0.75 -35.75 4.30 -322.94 -1.39 -37.13 16 20 C -0.21 -12.73 10.41 84.04 0.87 -11.86 16 21 H 0.05 3.26 8.06 -2.91 -0.02 3.23 16 22 C -0.07 -4.35 5.50 84.86 0.47 -3.89 16 23 N -0.99 -66.74 13.97 21.65 0.30 -66.44 16 24 Si 0.95 48.70 27.74 68.60 1.90 50.61 16 25 H -0.27 -13.37 7.11 99.48 0.71 -12.66 16 26 H -0.30 -15.85 7.11 99.48 0.71 -15.14 16 27 H -0.26 -12.01 6.51 99.48 0.65 -11.36 16 28 N -0.43 -11.76 9.53 -184.52 -1.76 -13.52 16 29 C 0.07 1.53 11.14 85.00 0.95 2.48 16 30 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.05 0.74 6.97 -2.39 -0.02 0.72 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 0.81 6.32 -2.38 -0.02 0.79 16 34 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.17 2.49 5.59 -2.91 -0.02 2.48 16 38 H 0.14 4.09 7.63 -2.91 -0.02 4.06 16 39 H 0.41 11.49 7.92 -92.71 -0.73 10.76 16 40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 45 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.36 16.83 5.66 -92.70 -0.52 16.31 16 49 H 0.25 16.43 8.31 -92.71 -0.77 15.66 16 50 H 0.20 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -81.94 407.82 2.74 -79.20 By element: Atomic # 1 Polarization: 38.13 SS G_CDS: -0.37 Total: 37.75 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 6.98 Total: 5.61 kcal Atomic # 7 Polarization: -136.39 SS G_CDS: -4.82 Total: -141.21 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.95 Total: -31.96 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 1.90 Total: 50.61 kcal Total: -81.94 2.74 -79.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146838983.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.444 kcal (2) G-P(sol) polarization free energy of solvation -81.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds