Wall clock time and date at job start Tue Mar 31 2020 19:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47366 * 2 1 4 4 O 1.42907 * 109.46881 * 120.00114 * 2 1 3 5 5 C 1.35430 * 117.00113 * 149.99898 * 4 2 1 6 6 N 1.32236 * 119.79649 * 0.02562 * 5 4 2 7 7 C 1.31880 * 121.79383 * 180.02562 * 6 5 4 8 8 C 1.38349 * 121.19033 * 359.96871 * 7 6 5 9 9 C 1.38341 * 119.45729 * 0.02580 * 8 7 6 10 10 C 1.39985 * 118.34837 * 0.25326 * 9 8 7 11 11 C 1.47523 * 120.59724 * 179.72658 * 10 9 8 12 12 O 1.21590 * 120.00210 * 179.97438 * 11 10 9 13 13 N 1.34780 * 120.00081 * 359.97438 * 11 10 9 14 14 C 1.46497 * 119.99762 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.47875 * 34.99829 * 14 13 11 16 16 C 1.53002 * 109.46876 * 274.99238 * 14 13 11 17 17 C 1.53002 * 109.46692 * 155.00144 * 14 13 11 18 18 C 1.53002 * 109.47070 * 294.99053 * 17 14 13 19 19 H 1.09000 * 109.46588 * 55.00704 * 18 17 14 20 20 C 1.53002 * 109.47170 * 175.00063 * 18 17 14 21 21 N 1.46493 * 109.47173 * 295.00576 * 18 17 14 22 22 C 1.36946 * 119.99669 * 154.99796 * 21 18 17 23 23 H 1.07992 * 120.00029 * 359.97438 * 22 21 18 24 24 C 1.38812 * 119.99730 * 179.97438 * 22 21 18 25 25 N 1.31615 * 120.00168 * 179.97438 * 24 22 21 26 26 Si 1.86806 * 120.00271 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47068 * 89.99056 * 26 24 22 28 28 H 1.48495 * 109.47142 * 209.99598 * 26 24 22 29 29 H 1.48501 * 109.46837 * 329.99766 * 26 24 22 30 30 H 1.08994 * 109.47317 * 300.00599 * 1 2 3 31 31 H 1.09002 * 109.46948 * 59.99912 * 1 2 3 32 32 H 1.09000 * 109.47393 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47335 * 239.99888 * 2 1 3 34 34 H 1.09000 * 109.47042 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47166 * 299.99364 * 3 2 1 36 36 H 1.08997 * 109.47157 * 59.99921 * 3 2 1 37 37 H 1.08002 * 119.40214 * 179.97438 * 7 6 5 38 38 H 1.07999 * 120.27366 * 180.02562 * 8 7 6 39 39 H 1.08002 * 120.82299 * 179.97438 * 9 8 7 40 40 H 0.96998 * 119.99963 * 359.97438 * 13 11 10 41 41 H 1.09006 * 109.46695 * 60.00753 * 16 14 13 42 42 H 1.08994 * 109.46923 * 180.02562 * 16 14 13 43 43 H 1.08996 * 109.47351 * 300.00912 * 16 14 13 44 44 H 1.09001 * 109.47449 * 54.99502 * 17 14 13 45 45 H 1.08999 * 109.46880 * 174.99497 * 17 14 13 46 46 H 1.09001 * 109.46613 * 60.00296 * 20 18 17 47 47 H 1.09002 * 109.46964 * 180.02562 * 20 18 17 48 48 H 1.08998 * 109.47178 * 300.00795 * 20 18 17 49 49 H 0.96999 * 120.00700 * 334.99656 * 21 18 17 50 50 H 0.97000 * 120.00177 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1965 -1.3119 1.0656 6 7 3.8588 -1.2896 -0.0788 7 6 5.0202 -1.8978 -0.2213 8 6 5.6002 -2.5896 0.8270 9 6 4.9507 -2.6455 2.0472 10 6 3.7164 -1.9975 2.1735 11 6 2.9781 -2.0304 3.4503 12 8 1.9070 -1.4633 3.5481 13 7 3.4910 -2.6889 4.5085 14 6 2.7576 -2.7220 5.7763 15 1 1.6868 -2.7579 5.5759 16 6 3.0831 -1.4657 6.5866 17 6 3.1695 -3.9626 6.5714 18 6 2.7316 -5.2201 5.8177 19 1 3.1378 -5.1974 4.8065 20 6 3.2516 -6.4597 6.5484 21 7 1.2688 -5.2675 5.7555 22 6 0.6484 -5.9593 4.7495 23 1 1.2375 -6.4694 4.0019 24 6 -0.7378 -6.0047 4.6908 25 7 -1.3341 -6.6691 3.7237 26 14 -1.7569 -5.1216 5.9836 27 1 -2.0310 -3.7331 5.5343 28 1 -3.0409 -5.8416 6.1784 29 1 -1.0086 -5.0882 7.2658 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6769 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 5.5278 -1.8550 -1.1737 38 1 6.5522 -3.0820 0.6940 39 1 5.3832 -3.1797 2.8804 40 1 4.3454 -3.1416 4.4305 41 1 2.7897 -0.5818 6.0201 42 1 2.5378 -1.4905 7.5300 43 1 4.1539 -1.4299 6.7870 44 1 4.2524 -3.9719 6.6953 45 1 2.6919 -3.9414 7.5510 46 1 2.8454 -6.4823 7.5596 47 1 2.9400 -7.3555 6.0111 48 1 4.3400 -6.4243 6.5947 49 1 0.7395 -4.8090 6.4267 50 1 -2.3027 -6.7005 3.6825 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146886197.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:30 Heat of formation + Delta-G solvation = -31.765186 kcal Electronic energy + Delta-G solvation = -30246.450727 eV Core-core repulsion = 26274.452646 eV Total energy + Delta-G solvation = -3971.998081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.94068 -39.19661 -38.20223 -36.84997 -34.52571 -33.23962 -33.02685 -31.98830 -30.81875 -29.94543 -29.16233 -27.27225 -26.39455 -24.78385 -23.80077 -23.24616 -21.53692 -21.20473 -20.33474 -19.78486 -18.60633 -17.75971 -17.27019 -16.94478 -15.84762 -15.66686 -15.23780 -14.80534 -14.70516 -14.43122 -14.29980 -14.01509 -13.81409 -13.56734 -13.20558 -13.18764 -12.92051 -12.62096 -12.49733 -12.36034 -12.33368 -12.27106 -12.06356 -11.96344 -11.95099 -11.68736 -11.19073 -10.95931 -10.86728 -10.78664 -10.62875 -10.46173 -10.25407 -10.02842 -9.97684 -9.92092 -9.50763 -9.38015 -8.85102 -8.73951 -8.50248 -7.18604 -5.68669 -3.03312 0.66032 1.15591 2.99428 3.11008 3.37635 3.44269 3.48742 3.53742 3.88553 4.14325 4.58484 4.68003 4.73866 4.84221 4.89671 4.96794 5.00177 5.04509 5.19978 5.27997 5.31081 5.42011 5.51880 5.57021 5.62129 5.67491 5.72348 5.74202 5.80101 5.81893 5.84661 5.91038 5.91438 6.03389 6.09341 6.20476 6.20989 6.27633 6.29878 6.35058 6.45343 6.58496 6.77877 6.87945 7.01135 7.30160 7.65325 7.83831 8.06405 8.50102 8.60150 9.28850 10.01861 10.20751 11.50031 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009895 B = 0.004091 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.917137 B = 6842.487538 C = 7921.427450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.076 3.924 3 C -0.166 4.166 4 O -0.260 6.260 5 C 0.376 3.624 6 N -0.547 5.547 7 C 0.162 3.838 8 C -0.224 4.224 9 C -0.009 4.009 10 C -0.203 4.203 11 C 0.564 3.436 12 O -0.508 6.508 13 N -0.715 5.715 14 C 0.145 3.855 15 H 0.100 0.900 16 C -0.162 4.162 17 C -0.135 4.135 18 C 0.177 3.823 19 H 0.054 0.946 20 C -0.166 4.166 21 N -0.745 5.745 22 C -0.237 4.237 23 H 0.087 0.913 24 C 0.006 3.994 25 N -0.935 5.935 26 Si 0.880 3.120 27 H -0.282 1.282 28 H -0.293 1.293 29 H -0.278 1.278 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.162 0.838 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.391 0.609 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.044 0.956 47 H 0.056 0.944 48 H 0.037 0.963 49 H 0.360 0.640 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.928 13.185 -4.285 21.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.019 3.981 3 C -0.223 4.223 4 O -0.165 6.165 5 C 0.196 3.804 6 N -0.271 5.271 7 C 0.005 3.995 8 C -0.245 4.245 9 C -0.034 4.034 10 C -0.210 4.210 11 C 0.350 3.650 12 O -0.383 6.383 13 N -0.368 5.368 14 C 0.041 3.959 15 H 0.118 0.882 16 C -0.220 4.220 17 C -0.173 4.173 18 C 0.067 3.933 19 H 0.072 0.928 20 C -0.226 4.226 21 N -0.388 5.388 22 C -0.367 4.367 23 H 0.105 0.895 24 C -0.189 4.189 25 N -0.583 5.583 26 Si 0.711 3.289 27 H -0.209 1.209 28 H -0.219 1.219 29 H -0.204 1.204 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.179 0.821 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.226 0.774 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.064 0.936 47 H 0.076 0.924 48 H 0.056 0.944 49 H 0.192 0.808 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 15.463 13.972 -4.878 21.404 hybrid contribution 0.051 -0.245 1.289 1.313 sum 15.514 13.727 -3.589 21.024 Atomic orbital electron populations 1.21885 0.92596 1.03586 1.02737 1.22432 0.95027 0.92592 0.88005 1.22204 1.01679 0.95856 1.02581 1.86631 1.30016 1.62472 1.37336 1.19842 0.85556 0.86920 0.88058 1.67411 1.10855 1.24954 1.23928 1.22606 0.89042 0.89198 0.98685 1.21874 1.03222 1.05275 0.94095 1.21628 0.91403 0.92481 0.97937 1.20126 0.98320 1.07122 0.95400 1.17661 0.85164 0.79471 0.82716 1.90845 1.20491 1.43736 1.83238 1.45800 1.24163 1.55053 1.11756 1.20982 0.98849 0.93842 0.82204 0.88195 1.22195 1.01088 0.98579 1.00137 1.22225 1.00718 0.94863 0.99532 1.20191 0.85285 0.90936 0.96867 0.92815 1.22429 0.98225 1.01062 1.00853 1.42767 1.00562 1.63221 1.32263 1.18992 0.90129 1.24359 1.03220 0.89514 1.24623 0.96278 1.00101 0.97941 1.69695 1.08725 1.46400 1.33526 0.86606 0.80273 0.80008 0.82032 1.20881 1.21918 1.20392 0.91385 0.90754 0.91405 0.89435 0.92306 0.91204 0.91875 0.82108 0.84058 0.83946 0.77449 0.92346 0.91869 0.92964 0.91571 0.90697 0.93640 0.92446 0.94401 0.80761 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.56 37.16 0.36 -1.55 16 2 C 0.08 1.03 3.11 -26.73 -0.08 0.94 16 3 C -0.17 -1.85 9.53 37.16 0.35 -1.50 16 4 O -0.26 -4.52 7.86 -39.75 -0.31 -4.83 16 5 C 0.38 6.00 7.47 -16.61 -0.12 5.88 16 6 N -0.55 -7.32 8.64 -12.98 -0.11 -7.43 16 7 C 0.16 1.61 11.17 -17.49 -0.20 1.42 16 8 C -0.22 -2.01 10.09 -39.50 -0.40 -2.41 16 9 C -0.01 -0.09 9.64 -38.89 -0.37 -0.47 16 10 C -0.20 -3.09 5.90 -104.69 -0.62 -3.71 16 11 C 0.56 10.01 7.74 -12.47 -0.10 9.92 16 12 O -0.51 -11.20 14.86 -16.48 -0.24 -11.45 16 13 N -0.72 -10.52 4.40 -54.85 -0.24 -10.76 16 14 C 0.15 2.27 2.52 -67.93 -0.17 2.10 16 15 H 0.10 2.03 7.05 -51.93 -0.37 1.66 16 16 C -0.16 -2.12 9.48 37.16 0.35 -1.77 16 17 C -0.13 -1.92 4.29 -26.73 -0.11 -2.03 16 18 C 0.18 3.22 2.84 -67.93 -0.19 3.03 16 19 H 0.05 1.02 7.56 -51.93 -0.39 0.63 16 20 C -0.17 -2.77 9.49 37.16 0.35 -2.42 16 21 N -0.74 -17.53 4.30 -53.43 -0.23 -17.76 16 22 C -0.24 -6.78 10.41 -15.06 -0.16 -6.94 16 23 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 24 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 25 N -0.94 -30.27 13.97 55.49 0.78 -29.49 16 26 Si 0.88 23.08 27.74 -169.99 -4.71 18.36 16 27 H -0.28 -7.55 7.11 56.52 0.40 -7.14 16 28 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 29 H -0.28 -6.77 6.52 56.52 0.37 -6.40 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 1.16 6.98 -51.93 -0.36 0.79 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.14 1.12 6.52 -52.49 -0.34 0.78 16 40 H 0.39 4.42 6.70 -40.82 -0.27 4.14 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.36 8.46 5.66 -40.82 -0.23 8.23 16 50 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 LS Contribution 408.18 15.07 6.15 6.15 Total: -1.00 -36.96 408.18 -8.46 -45.42 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -8.32 Total: 11.21 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -1.21 Total: 0.57 kcal Atomic # 7 Polarization: -65.63 SS G_CDS: 0.19 Total: -65.44 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.56 Total: -16.28 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.71 Total: 18.36 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.96 -8.46 -45.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146886197.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.657 kcal (2) G-P(sol) polarization free energy of solvation -36.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds