Wall clock time and date at job start Tue Mar 31 2020 19:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47366 * 2 1 4 4 O 1.42907 * 109.46881 * 120.00114 * 2 1 3 5 5 C 1.35430 * 117.00113 * 149.99898 * 4 2 1 6 6 N 1.32236 * 119.79649 * 0.02562 * 5 4 2 7 7 C 1.31880 * 121.79383 * 180.02562 * 6 5 4 8 8 C 1.38349 * 121.19033 * 359.96871 * 7 6 5 9 9 C 1.38341 * 119.45729 * 0.02580 * 8 7 6 10 10 C 1.39985 * 118.34837 * 0.25326 * 9 8 7 11 11 C 1.47523 * 120.59724 * 179.72658 * 10 9 8 12 12 O 1.21590 * 120.00210 * 179.97438 * 11 10 9 13 13 N 1.34780 * 120.00081 * 359.97438 * 11 10 9 14 14 C 1.46497 * 119.99762 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.47875 * 34.99829 * 14 13 11 16 16 C 1.53002 * 109.46876 * 274.99238 * 14 13 11 17 17 C 1.53002 * 109.46692 * 155.00144 * 14 13 11 18 18 C 1.53002 * 109.47070 * 294.99053 * 17 14 13 19 19 H 1.09000 * 109.46588 * 55.00704 * 18 17 14 20 20 C 1.53002 * 109.47170 * 175.00063 * 18 17 14 21 21 N 1.46493 * 109.47173 * 295.00576 * 18 17 14 22 22 C 1.36946 * 119.99669 * 154.99796 * 21 18 17 23 23 H 1.07992 * 120.00029 * 359.97438 * 22 21 18 24 24 C 1.38812 * 119.99730 * 179.97438 * 22 21 18 25 25 N 1.31615 * 120.00168 * 179.97438 * 24 22 21 26 26 Si 1.86806 * 120.00271 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47068 * 89.99056 * 26 24 22 28 28 H 1.48495 * 109.47142 * 209.99598 * 26 24 22 29 29 H 1.48501 * 109.46837 * 329.99766 * 26 24 22 30 30 H 1.08994 * 109.47317 * 300.00599 * 1 2 3 31 31 H 1.09002 * 109.46948 * 59.99912 * 1 2 3 32 32 H 1.09000 * 109.47393 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47335 * 239.99888 * 2 1 3 34 34 H 1.09000 * 109.47042 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47166 * 299.99364 * 3 2 1 36 36 H 1.08997 * 109.47157 * 59.99921 * 3 2 1 37 37 H 1.08002 * 119.40214 * 179.97438 * 7 6 5 38 38 H 1.07999 * 120.27366 * 180.02562 * 8 7 6 39 39 H 1.08002 * 120.82299 * 179.97438 * 9 8 7 40 40 H 0.96998 * 119.99963 * 359.97438 * 13 11 10 41 41 H 1.09006 * 109.46695 * 60.00753 * 16 14 13 42 42 H 1.08994 * 109.46923 * 180.02562 * 16 14 13 43 43 H 1.08996 * 109.47351 * 300.00912 * 16 14 13 44 44 H 1.09001 * 109.47449 * 54.99502 * 17 14 13 45 45 H 1.08999 * 109.46880 * 174.99497 * 17 14 13 46 46 H 1.09001 * 109.46613 * 60.00296 * 20 18 17 47 47 H 1.09002 * 109.46964 * 180.02562 * 20 18 17 48 48 H 1.08998 * 109.47178 * 300.00795 * 20 18 17 49 49 H 0.96999 * 120.00700 * 334.99656 * 21 18 17 50 50 H 0.97000 * 120.00177 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1965 -1.3119 1.0656 6 7 3.8588 -1.2896 -0.0788 7 6 5.0202 -1.8978 -0.2213 8 6 5.6002 -2.5896 0.8270 9 6 4.9507 -2.6455 2.0472 10 6 3.7164 -1.9975 2.1735 11 6 2.9781 -2.0304 3.4503 12 8 1.9070 -1.4633 3.5481 13 7 3.4910 -2.6889 4.5085 14 6 2.7576 -2.7220 5.7763 15 1 1.6868 -2.7579 5.5759 16 6 3.0831 -1.4657 6.5866 17 6 3.1695 -3.9626 6.5714 18 6 2.7316 -5.2201 5.8177 19 1 3.1378 -5.1974 4.8065 20 6 3.2516 -6.4597 6.5484 21 7 1.2688 -5.2675 5.7555 22 6 0.6484 -5.9593 4.7495 23 1 1.2375 -6.4694 4.0019 24 6 -0.7378 -6.0047 4.6908 25 7 -1.3341 -6.6691 3.7237 26 14 -1.7569 -5.1216 5.9836 27 1 -2.0310 -3.7331 5.5343 28 1 -3.0409 -5.8416 6.1784 29 1 -1.0086 -5.0882 7.2658 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6769 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 5.5278 -1.8550 -1.1737 38 1 6.5522 -3.0820 0.6940 39 1 5.3832 -3.1797 2.8804 40 1 4.3454 -3.1416 4.4305 41 1 2.7897 -0.5818 6.0201 42 1 2.5378 -1.4905 7.5300 43 1 4.1539 -1.4299 6.7870 44 1 4.2524 -3.9719 6.6953 45 1 2.6919 -3.9414 7.5510 46 1 2.8454 -6.4823 7.5596 47 1 2.9400 -7.3555 6.0111 48 1 4.3400 -6.4243 6.5947 49 1 0.7395 -4.8090 6.4267 50 1 -2.3027 -6.7005 3.6825 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146886197.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:29 Heat of formation + Delta-G solvation = -58.546841 kcal Electronic energy + Delta-G solvation = -30247.612067 eV Core-core repulsion = 26274.452646 eV Total energy + Delta-G solvation = -3973.159421 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.96474 -40.45314 -39.21409 -38.34254 -36.11796 -34.29495 -34.25959 -33.74567 -32.02452 -31.19998 -30.73394 -28.24840 -27.60419 -25.78951 -25.33497 -24.75891 -22.68005 -22.27697 -21.68970 -21.24206 -19.81989 -19.54785 -18.54315 -17.97721 -17.05743 -16.87460 -16.54927 -16.14404 -15.93718 -15.88773 -15.45199 -15.32379 -15.21007 -14.85500 -14.59463 -14.31287 -14.20238 -14.08591 -13.93893 -13.44504 -13.39275 -13.32842 -13.25170 -13.23510 -13.01129 -12.91030 -12.83064 -12.64679 -12.30094 -12.01512 -11.96251 -11.89248 -11.80157 -11.69480 -11.43180 -11.10019 -10.99532 -10.97926 -10.52791 -10.00774 -9.48632 -9.27004 -8.02594 -5.32009 -0.29382 0.26650 1.30019 1.37825 1.41128 1.95069 2.02153 2.21964 2.46825 2.85114 3.25711 3.31166 3.65703 3.72190 3.77268 3.86277 3.90238 3.97239 4.00585 4.09925 4.19222 4.22690 4.35718 4.51449 4.55175 4.61245 4.66770 4.74135 4.76686 4.77623 4.82237 4.83182 4.89418 4.92315 5.01503 5.08856 5.09127 5.14158 5.18003 5.22551 5.33365 5.39226 5.48469 5.62022 5.64326 5.79281 6.22650 6.30069 6.61394 6.79356 7.10714 7.36969 7.90067 8.04798 9.19809 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009895 B = 0.004091 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.917137 B = 6842.487538 C = 7921.427450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.068 3.932 3 C -0.154 4.154 4 O -0.298 6.298 5 C 0.347 3.653 6 N -0.560 5.560 7 C 0.159 3.841 8 C -0.207 4.207 9 C -0.004 4.004 10 C -0.240 4.240 11 C 0.555 3.445 12 O -0.569 6.569 13 N -0.701 5.701 14 C 0.143 3.857 15 H 0.045 0.955 16 C -0.151 4.151 17 C -0.120 4.120 18 C 0.166 3.834 19 H 0.043 0.957 20 C -0.156 4.156 21 N -0.750 5.750 22 C -0.211 4.211 23 H 0.054 0.946 24 C -0.068 4.068 25 N -0.987 5.987 26 Si 0.945 3.055 27 H -0.295 1.295 28 H -0.295 1.295 29 H -0.244 1.244 30 H 0.054 0.946 31 H 0.108 0.892 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.052 0.948 37 H 0.203 0.797 38 H 0.188 0.812 39 H 0.174 0.826 40 H 0.410 0.590 41 H 0.032 0.968 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.115 0.885 45 H 0.086 0.914 46 H 0.050 0.950 47 H 0.025 0.975 48 H 0.081 0.919 49 H 0.361 0.639 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.070 13.610 -3.091 25.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.012 3.988 3 C -0.212 4.212 4 O -0.204 6.204 5 C 0.168 3.832 6 N -0.285 5.285 7 C 0.003 3.997 8 C -0.226 4.226 9 C -0.030 4.030 10 C -0.246 4.246 11 C 0.343 3.657 12 O -0.448 6.448 13 N -0.354 5.354 14 C 0.038 3.962 15 H 0.063 0.937 16 C -0.209 4.209 17 C -0.158 4.158 18 C 0.058 3.942 19 H 0.061 0.939 20 C -0.216 4.216 21 N -0.393 5.393 22 C -0.342 4.342 23 H 0.072 0.928 24 C -0.258 4.258 25 N -0.639 5.639 26 Si 0.773 3.227 27 H -0.223 1.223 28 H -0.222 1.222 29 H -0.168 1.168 30 H 0.074 0.926 31 H 0.127 0.873 32 H 0.062 0.938 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.071 0.929 37 H 0.219 0.781 38 H 0.205 0.795 39 H 0.192 0.808 40 H 0.248 0.752 41 H 0.052 0.948 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.133 0.867 45 H 0.105 0.895 46 H 0.069 0.931 47 H 0.044 0.956 48 H 0.100 0.900 49 H 0.194 0.806 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 19.716 14.381 -3.628 24.671 hybrid contribution -1.016 -0.428 0.779 1.350 sum 18.699 13.953 -2.850 23.505 Atomic orbital electron populations 1.21913 0.92565 1.02275 1.03764 1.22641 0.95175 0.93717 0.87246 1.22118 1.01277 0.94385 1.03397 1.86585 1.31379 1.63379 1.39071 1.20130 0.85764 0.88008 0.89343 1.67455 1.12205 1.25909 1.22882 1.23475 0.87832 0.87659 1.00764 1.22396 1.04175 1.03550 0.92490 1.22051 0.89606 0.91353 0.99971 1.20181 1.00403 1.09789 0.94229 1.18215 0.84691 0.78749 0.84076 1.90801 1.23197 1.46468 1.84355 1.45672 1.24565 1.54192 1.10963 1.20919 0.96112 0.96135 0.83017 0.93665 1.22090 1.03274 0.95935 0.99621 1.22151 1.03682 0.91250 0.98719 1.20533 0.82059 0.94040 0.97524 0.93919 1.22280 1.01027 0.98204 1.00083 1.42844 1.03114 1.62445 1.30903 1.18963 0.89930 1.22414 1.02941 0.92814 1.25396 0.97803 1.02065 1.00582 1.69869 1.08650 1.49225 1.36182 0.85543 0.78663 0.77574 0.80870 1.22277 1.22177 1.16806 0.92644 0.87322 0.93827 0.89407 0.92730 0.88429 0.92851 0.78061 0.79455 0.80829 0.75236 0.94827 0.90660 0.89698 0.86704 0.89511 0.93095 0.95613 0.89978 0.80620 0.93759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 9.56 71.98 0.69 -3.35 16 2 C 0.07 1.96 3.11 30.59 0.10 2.06 16 3 C -0.15 -3.54 9.53 71.98 0.69 -2.86 16 4 O -0.30 -11.28 7.86 -66.45 -0.52 -11.80 16 5 C 0.35 11.55 7.47 85.13 0.64 12.19 16 6 N -0.56 -14.79 8.64 -308.00 -2.66 -17.45 16 7 C 0.16 2.73 11.17 84.71 0.95 3.67 16 8 C -0.21 -2.89 10.09 22.32 0.23 -2.67 16 9 C 0.00 -0.08 9.64 22.72 0.22 0.14 16 10 C -0.24 -7.43 5.90 -19.91 -0.12 -7.55 16 11 C 0.56 20.59 7.74 86.69 0.67 21.26 16 12 O -0.57 -27.22 14.86 16.81 0.25 -26.97 16 13 N -0.70 -20.13 4.40 -445.71 -1.96 -22.09 16 14 C 0.14 4.32 2.52 44.99 0.11 4.44 16 15 H 0.05 1.90 7.05 -2.39 -0.02 1.88 16 16 C -0.15 -3.69 9.48 71.98 0.68 -3.01 16 17 C -0.12 -2.98 4.29 30.60 0.13 -2.85 16 18 C 0.17 5.73 2.84 44.99 0.13 5.86 16 19 H 0.04 1.57 7.56 -2.39 -0.02 1.55 16 20 C -0.16 -4.75 9.49 71.98 0.68 -4.07 16 21 N -0.75 -35.18 4.30 -322.95 -1.39 -36.57 16 22 C -0.21 -12.45 10.41 84.03 0.87 -11.57 16 23 H 0.05 3.47 8.06 -2.91 -0.02 3.45 16 24 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 25 N -0.99 -66.89 13.97 21.65 0.30 -66.59 16 26 Si 0.94 49.21 27.74 68.60 1.90 51.11 16 27 H -0.30 -15.90 7.11 99.48 0.71 -15.19 16 28 H -0.29 -15.36 7.11 99.48 0.71 -14.66 16 29 H -0.24 -11.18 6.52 99.48 0.65 -10.53 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.09 2.44 6.98 -2.38 -0.02 2.42 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.20 1.66 8.06 -2.91 -0.02 1.64 16 38 H 0.19 0.93 8.06 -2.91 -0.02 0.90 16 39 H 0.17 2.05 6.52 -2.91 -0.02 2.03 16 40 H 0.41 8.18 6.70 -92.71 -0.62 7.56 16 41 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.36 16.70 5.66 -92.71 -0.52 16.17 16 50 H 0.25 16.50 8.31 -92.71 -0.77 15.73 16 Total: -1.00 -90.98 408.18 2.78 -88.20 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: -0.27 Total: 34.22 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 7.13 Total: 7.92 kcal Atomic # 7 Polarization: -136.98 SS G_CDS: -5.71 Total: -142.69 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -0.27 Total: -38.76 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 1.90 Total: 51.11 kcal Total: -90.98 2.78 -88.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146886197.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.652 kcal (2) G-P(sol) polarization free energy of solvation -90.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds