Wall clock time and date at job start Tue Mar 31 2020 19:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 O 1.42906 * 109.46748 * 119.99818 * 2 1 3 5 5 C 1.35432 * 116.99508 * 90.00020 * 4 2 1 6 6 N 1.32231 * 119.79947 * 0.02562 * 5 4 2 7 7 C 1.31887 * 121.79953 * 180.02562 * 6 5 4 8 8 C 1.38362 * 121.18234 * 359.97438 * 7 6 5 9 9 C 1.38333 * 119.46038 * 0.02562 * 8 7 6 10 10 C 1.39995 * 118.34707 * 359.72424 * 9 8 7 11 11 C 1.47524 * 120.59866 * 180.29139 * 10 9 8 12 12 O 1.21584 * 120.00320 * 180.24718 * 11 10 9 13 13 N 1.34781 * 119.99638 * 0.24133 * 11 10 9 14 14 C 1.46500 * 119.99677 * 179.97438 * 13 11 10 15 15 H 1.09003 * 109.47630 * 325.00711 * 14 13 11 16 16 C 1.53008 * 109.46728 * 85.00524 * 14 13 11 17 17 C 1.52997 * 109.47071 * 205.00035 * 14 13 11 18 18 C 1.52997 * 109.47130 * 65.00530 * 17 14 13 19 19 H 1.09012 * 109.47052 * 54.99828 * 18 17 14 20 20 C 1.53000 * 109.47584 * 174.99549 * 18 17 14 21 21 N 1.46500 * 109.47211 * 295.00065 * 18 17 14 22 22 C 1.36936 * 120.00117 * 155.00096 * 21 18 17 23 23 H 1.07997 * 119.99973 * 359.97438 * 22 21 18 24 24 C 1.38817 * 119.99879 * 180.02562 * 22 21 18 25 25 N 1.31614 * 119.99590 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47401 * 59.99771 * 26 24 22 28 28 H 1.48497 * 109.47342 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47216 * 299.99725 * 26 24 22 30 30 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 33 33 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 34 34 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 35 35 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 37 37 H 1.07997 * 119.40934 * 179.97438 * 7 6 5 38 38 H 1.08001 * 120.26956 * 180.02562 * 8 7 6 39 39 H 1.07994 * 120.83092 * 180.02562 * 9 8 7 40 40 H 0.96994 * 120.00358 * 0.02562 * 13 11 10 41 41 H 1.08996 * 109.47228 * 59.99969 * 16 14 13 42 42 H 1.09002 * 109.47231 * 179.97438 * 16 14 13 43 43 H 1.08995 * 109.47180 * 299.99463 * 16 14 13 44 44 H 1.09008 * 109.46813 * 185.00359 * 17 14 13 45 45 H 1.08991 * 109.47503 * 305.00379 * 17 14 13 46 46 H 1.09005 * 109.46770 * 59.99680 * 20 18 17 47 47 H 1.08992 * 109.47549 * 179.97438 * 20 18 17 48 48 H 1.09004 * 109.47091 * 300.00784 * 20 18 17 49 49 H 0.97000 * 119.99735 * 334.99454 * 21 18 17 50 50 H 0.97005 * 119.99617 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2112 -2.0085 1.0655 6 7 1.9704 -2.6253 -0.0791 7 6 2.1556 -3.9233 -0.2216 8 6 2.6136 -4.7009 0.8272 9 6 2.8817 -4.1075 2.0477 10 6 2.6827 -2.7276 2.1738 11 6 2.9591 -2.0427 3.4509 12 8 2.7782 -0.8444 3.5498 13 7 3.4121 -2.7453 4.5081 14 6 3.6871 -2.0651 5.7761 15 1 4.0748 -1.0662 5.5761 16 6 2.3946 -1.9574 6.5878 17 6 4.7225 -2.8646 6.5696 18 6 6.0532 -2.8666 5.8146 19 1 6.3582 -1.8396 5.6131 20 6 7.1209 -3.5583 6.6646 21 7 5.8951 -3.5863 4.5484 22 6 6.7255 -3.3096 3.4953 23 1 7.4967 -2.5605 3.5980 24 6 6.5754 -3.9913 2.2953 25 7 5.6352 -4.9038 2.1701 26 14 7.7076 -3.6133 0.8585 27 1 9.1137 -3.8845 1.2516 28 1 7.3433 -4.4709 -0.2977 29 1 7.5664 -2.1845 0.4795 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.9462 -4.3875 -1.1740 38 1 2.7605 -5.7626 0.6940 39 1 3.2403 -4.6933 2.8810 40 1 3.5567 -3.7012 4.4292 41 1 2.0069 -2.9563 6.7879 42 1 2.5992 -1.4517 7.5315 43 1 1.6570 -1.3879 6.0226 44 1 4.8614 -2.4075 7.5494 45 1 4.3733 -3.8896 6.6931 46 1 6.8159 -4.5852 6.8661 47 1 8.0688 -3.5601 6.1265 48 1 7.2384 -3.0227 7.6067 49 1 5.2023 -4.2589 4.4561 50 1 5.5301 -5.3798 1.3315 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146886198.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:33 Heat of formation + Delta-G solvation = -28.886312 kcal Electronic energy + Delta-G solvation = -31351.304197 eV Core-core repulsion = 27379.430953 eV Total energy + Delta-G solvation = -3971.873244 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.35115 -38.84141 -37.68537 -36.62661 -34.11453 -32.94761 -32.66594 -31.78627 -30.44365 -29.46328 -28.49140 -27.10584 -26.31213 -24.15684 -23.69505 -23.21365 -21.18192 -20.81744 -20.18168 -19.57426 -18.07536 -17.19694 -16.87933 -16.40804 -15.52624 -15.31947 -14.83807 -14.61311 -14.26808 -14.09882 -13.93956 -13.75893 -13.55273 -13.43017 -12.92054 -12.78291 -12.62809 -12.40520 -12.15061 -12.11670 -12.05062 -11.90139 -11.77228 -11.70431 -11.68822 -11.63746 -11.00541 -10.83746 -10.74526 -10.67403 -10.47361 -10.34380 -10.28007 -9.91748 -9.70778 -9.43742 -9.25255 -8.93103 -8.87061 -8.28200 -7.91056 -6.95628 -5.86023 -3.07233 1.33932 1.93859 3.41458 3.44191 3.45288 3.49254 3.63660 3.90879 4.51541 4.56829 4.69589 5.06502 5.12605 5.17958 5.38923 5.42452 5.45519 5.47560 5.48277 5.56146 5.60137 5.66042 5.69614 5.73539 5.88278 5.89711 5.98390 5.99341 6.01915 6.05489 6.08770 6.16370 6.25248 6.28602 6.33418 6.39524 6.45226 6.53469 6.58296 6.62286 6.78792 6.85779 6.99273 7.05563 7.28193 7.66817 7.78055 8.22664 8.34348 8.38310 9.07796 9.47211 9.99719 10.35794 11.36896 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009624 B = 0.005473 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.622561 B = 5114.704575 C = 6558.842277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.075 3.925 3 C -0.148 4.148 4 O -0.266 6.266 5 C 0.364 3.636 6 N -0.561 5.561 7 C 0.146 3.854 8 C -0.214 4.214 9 C 0.053 3.947 10 C -0.209 4.209 11 C 0.578 3.422 12 O -0.542 6.542 13 N -0.698 5.698 14 C 0.152 3.848 15 H 0.083 0.917 16 C -0.162 4.162 17 C -0.133 4.133 18 C 0.169 3.831 19 H 0.048 0.952 20 C -0.163 4.163 21 N -0.714 5.714 22 C -0.219 4.219 23 H 0.066 0.934 24 C -0.009 4.009 25 N -0.929 5.929 26 Si 0.899 3.101 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.290 1.290 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.151 0.849 38 H 0.134 0.866 39 H 0.151 0.849 40 H 0.400 0.600 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.045 0.955 47 H 0.052 0.948 48 H 0.035 0.965 49 H 0.376 0.624 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.512 2.193 1.597 9.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.019 3.981 3 C -0.205 4.205 4 O -0.172 6.172 5 C 0.184 3.816 6 N -0.286 5.286 7 C -0.009 4.009 8 C -0.234 4.234 9 C 0.027 3.973 10 C -0.215 4.215 11 C 0.365 3.635 12 O -0.421 6.421 13 N -0.352 5.352 14 C 0.047 3.953 15 H 0.101 0.899 16 C -0.220 4.220 17 C -0.172 4.172 18 C 0.059 3.941 19 H 0.066 0.934 20 C -0.223 4.223 21 N -0.357 5.357 22 C -0.350 4.350 23 H 0.084 0.916 24 C -0.205 4.205 25 N -0.578 5.578 26 Si 0.731 3.269 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.217 1.217 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.169 0.831 38 H 0.152 0.848 39 H 0.169 0.831 40 H 0.238 0.762 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.064 0.936 47 H 0.071 0.929 48 H 0.054 0.946 49 H 0.211 0.789 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.753 3.814 1.096 10.529 hybrid contribution 1.090 -1.186 -0.617 1.725 sum -8.663 2.628 0.478 9.065 Atomic orbital electron populations 1.22184 0.95396 1.02523 1.02059 1.22294 0.94028 0.93032 0.88783 1.21851 1.02137 0.94145 1.02343 1.86579 1.78714 1.15309 1.36576 1.19762 0.88691 0.84590 0.88535 1.67259 1.24797 1.12627 1.23957 1.22404 0.92224 0.87866 0.98396 1.21758 1.05696 1.01796 0.94179 1.21639 0.85283 0.91882 0.98521 1.19947 1.12167 0.94462 0.94913 1.17624 0.76638 0.86398 0.82861 1.90728 1.53401 1.14145 1.83817 1.45827 1.66501 1.12081 1.10744 1.20762 0.93847 0.97485 0.83204 0.89935 1.22207 0.98531 1.01521 0.99768 1.22206 0.96172 1.00189 0.98620 1.20296 0.91472 0.95635 0.86707 0.93386 1.22411 1.01074 1.00273 0.98530 1.42434 1.39486 1.45379 1.08399 1.19173 1.09197 1.16031 0.90576 0.91601 1.24468 0.99217 0.99370 0.97397 1.69469 1.34401 1.27945 1.25961 0.86373 0.80415 0.77460 0.82668 1.21595 1.21763 1.21663 0.91642 0.92209 0.92135 0.89707 0.91640 0.91866 0.91121 0.83147 0.84771 0.83127 0.76210 0.92919 0.92250 0.92356 0.90835 0.91817 0.93624 0.92912 0.94572 0.78893 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.53 37.16 0.35 -1.83 16 2 C 0.08 1.19 3.11 -26.73 -0.08 1.11 16 3 C -0.15 -2.01 9.56 37.16 0.36 -1.66 16 4 O -0.27 -5.37 7.86 -39.76 -0.31 -5.68 16 5 C 0.36 7.40 7.47 -16.61 -0.12 7.28 16 6 N -0.56 -10.25 8.64 -12.98 -0.11 -10.36 16 7 C 0.15 2.36 11.17 -17.48 -0.20 2.16 16 8 C -0.21 -3.54 10.09 -39.50 -0.40 -3.94 16 9 C 0.05 0.99 7.97 -38.89 -0.31 0.68 16 10 C -0.21 -4.29 5.90 -104.69 -0.62 -4.91 16 11 C 0.58 12.27 7.74 -12.47 -0.10 12.18 16 12 O -0.54 -12.82 14.85 -16.48 -0.24 -13.07 16 13 N -0.70 -12.83 3.76 -54.85 -0.21 -13.03 16 14 C 0.15 2.49 2.57 -67.93 -0.17 2.31 16 15 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 16 C -0.16 -2.23 9.48 37.16 0.35 -1.88 16 17 C -0.13 -1.98 4.43 -26.73 -0.12 -2.09 16 18 C 0.17 3.08 2.89 -67.93 -0.20 2.89 16 19 H 0.05 0.96 8.08 -51.92 -0.42 0.54 16 20 C -0.16 -2.73 9.49 37.16 0.35 -2.38 16 21 N -0.71 -15.60 3.84 -53.42 -0.21 -15.81 16 22 C -0.22 -5.58 9.93 -15.06 -0.15 -5.72 16 23 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 25 N -0.93 -23.18 10.75 55.49 0.60 -22.58 16 26 Si 0.90 21.99 29.55 -169.99 -5.02 16.97 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.37 6.98 -51.93 -0.36 1.01 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.15 1.87 8.06 -52.49 -0.42 1.44 16 38 H 0.13 1.94 8.06 -52.49 -0.42 1.51 16 39 H 0.15 2.80 5.95 -52.49 -0.31 2.49 16 40 H 0.40 7.21 4.61 -40.82 -0.19 7.02 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.38 8.27 5.70 -40.82 -0.23 8.03 16 50 H 0.25 6.39 8.31 -40.82 -0.34 6.06 16 LS Contribution 402.56 15.07 6.07 6.07 Total: -1.00 -29.36 402.56 -8.81 -38.16 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: -8.22 Total: 15.48 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -1.15 Total: 3.86 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: 0.07 Total: -61.79 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.56 Total: -18.74 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.36 -8.81 -38.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146886198.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.276 kcal (2) G-P(sol) polarization free energy of solvation -29.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds