Wall clock time and date at job start Tue Mar 31 2020 19:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 O 1.42906 * 109.46748 * 119.99818 * 2 1 3 5 5 C 1.35432 * 116.99508 * 90.00020 * 4 2 1 6 6 N 1.32231 * 119.79947 * 0.02562 * 5 4 2 7 7 C 1.31887 * 121.79953 * 180.02562 * 6 5 4 8 8 C 1.38362 * 121.18234 * 359.97438 * 7 6 5 9 9 C 1.38333 * 119.46038 * 0.02562 * 8 7 6 10 10 C 1.39995 * 118.34707 * 359.72424 * 9 8 7 11 11 C 1.47524 * 120.59866 * 180.29139 * 10 9 8 12 12 O 1.21584 * 120.00320 * 180.24718 * 11 10 9 13 13 N 1.34781 * 119.99638 * 0.24133 * 11 10 9 14 14 C 1.46500 * 119.99677 * 179.97438 * 13 11 10 15 15 H 1.09003 * 109.47630 * 325.00711 * 14 13 11 16 16 C 1.53008 * 109.46728 * 85.00524 * 14 13 11 17 17 C 1.52997 * 109.47071 * 205.00035 * 14 13 11 18 18 C 1.52997 * 109.47130 * 65.00530 * 17 14 13 19 19 H 1.09012 * 109.47052 * 54.99828 * 18 17 14 20 20 C 1.53000 * 109.47584 * 174.99549 * 18 17 14 21 21 N 1.46500 * 109.47211 * 295.00065 * 18 17 14 22 22 C 1.36936 * 120.00117 * 155.00096 * 21 18 17 23 23 H 1.07997 * 119.99973 * 359.97438 * 22 21 18 24 24 C 1.38817 * 119.99879 * 180.02562 * 22 21 18 25 25 N 1.31614 * 119.99590 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47401 * 59.99771 * 26 24 22 28 28 H 1.48497 * 109.47342 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47216 * 299.99725 * 26 24 22 30 30 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 33 33 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 34 34 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 35 35 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 37 37 H 1.07997 * 119.40934 * 179.97438 * 7 6 5 38 38 H 1.08001 * 120.26956 * 180.02562 * 8 7 6 39 39 H 1.07994 * 120.83092 * 180.02562 * 9 8 7 40 40 H 0.96994 * 120.00358 * 0.02562 * 13 11 10 41 41 H 1.08996 * 109.47228 * 59.99969 * 16 14 13 42 42 H 1.09002 * 109.47231 * 179.97438 * 16 14 13 43 43 H 1.08995 * 109.47180 * 299.99463 * 16 14 13 44 44 H 1.09008 * 109.46813 * 185.00359 * 17 14 13 45 45 H 1.08991 * 109.47503 * 305.00379 * 17 14 13 46 46 H 1.09005 * 109.46770 * 59.99680 * 20 18 17 47 47 H 1.08992 * 109.47549 * 179.97438 * 20 18 17 48 48 H 1.09004 * 109.47091 * 300.00784 * 20 18 17 49 49 H 0.97000 * 119.99735 * 334.99454 * 21 18 17 50 50 H 0.97005 * 119.99617 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2112 -2.0085 1.0655 6 7 1.9704 -2.6253 -0.0791 7 6 2.1556 -3.9233 -0.2216 8 6 2.6136 -4.7009 0.8272 9 6 2.8817 -4.1075 2.0477 10 6 2.6827 -2.7276 2.1738 11 6 2.9591 -2.0427 3.4509 12 8 2.7782 -0.8444 3.5498 13 7 3.4121 -2.7453 4.5081 14 6 3.6871 -2.0651 5.7761 15 1 4.0748 -1.0662 5.5761 16 6 2.3946 -1.9574 6.5878 17 6 4.7225 -2.8646 6.5696 18 6 6.0532 -2.8666 5.8146 19 1 6.3582 -1.8396 5.6131 20 6 7.1209 -3.5583 6.6646 21 7 5.8951 -3.5863 4.5484 22 6 6.7255 -3.3096 3.4953 23 1 7.4967 -2.5605 3.5980 24 6 6.5754 -3.9913 2.2953 25 7 5.6352 -4.9038 2.1701 26 14 7.7076 -3.6133 0.8585 27 1 9.1137 -3.8845 1.2516 28 1 7.3433 -4.4709 -0.2977 29 1 7.5664 -2.1845 0.4795 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.9462 -4.3875 -1.1740 38 1 2.7605 -5.7626 0.6940 39 1 3.2403 -4.6933 2.8810 40 1 3.5567 -3.7012 4.4292 41 1 2.0069 -2.9563 6.7879 42 1 2.5992 -1.4517 7.5315 43 1 1.6570 -1.3879 6.0226 44 1 4.8614 -2.4075 7.5494 45 1 4.3733 -3.8896 6.6931 46 1 6.8159 -4.5852 6.8661 47 1 8.0688 -3.5601 6.1265 48 1 7.2384 -3.0227 7.6067 49 1 5.2023 -4.2589 4.4561 50 1 5.5301 -5.3798 1.3315 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146886198.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:32 Heat of formation + Delta-G solvation = -45.720058 kcal Electronic energy + Delta-G solvation = -31352.034163 eV Core-core repulsion = 27379.430953 eV Total energy + Delta-G solvation = -3972.603210 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.78216 -40.32695 -39.05212 -38.18247 -35.72736 -34.29528 -34.15518 -33.37485 -31.90487 -30.88887 -30.09671 -28.19311 -27.57922 -25.62617 -25.48148 -24.59753 -22.58009 -22.10190 -21.64323 -21.08635 -19.46436 -19.06188 -18.33749 -17.82737 -16.97239 -16.72239 -16.53217 -16.00584 -15.77265 -15.55460 -15.42369 -15.28895 -15.14433 -14.73624 -14.30758 -14.20986 -14.01912 -13.79485 -13.55511 -13.32707 -13.26492 -13.19605 -13.18136 -13.12749 -12.90436 -12.84245 -12.77868 -12.59556 -12.27405 -12.17580 -11.88470 -11.73375 -11.68313 -11.57360 -11.39007 -10.95067 -10.90681 -10.61992 -10.37274 -9.81355 -9.31276 -8.75754 -7.82804 -5.00926 -0.08539 0.51219 1.42090 1.45286 1.48658 2.10656 2.12166 2.46835 2.60463 3.05583 3.39209 3.51742 3.79632 3.90685 3.99670 4.03177 4.06170 4.14655 4.19415 4.20812 4.26292 4.40487 4.42166 4.59187 4.66317 4.68084 4.72077 4.79713 4.83166 4.85504 4.89259 4.89639 4.94306 5.09021 5.11264 5.16369 5.18426 5.21285 5.23543 5.38521 5.40924 5.44386 5.62807 5.64078 5.66435 5.84382 6.41098 6.42428 6.75406 6.92361 7.49989 7.51831 8.19732 8.49187 9.38199 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009624 B = 0.005473 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.622561 B = 5114.704575 C = 6558.842277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 C -0.143 4.143 4 O -0.293 6.293 5 C 0.346 3.654 6 N -0.563 5.563 7 C 0.151 3.849 8 C -0.213 4.213 9 C 0.051 3.949 10 C -0.239 4.239 11 C 0.568 3.432 12 O -0.579 6.579 13 N -0.689 5.689 14 C 0.147 3.853 15 H 0.052 0.948 16 C -0.151 4.151 17 C -0.118 4.118 18 C 0.161 3.839 19 H 0.024 0.976 20 C -0.152 4.152 21 N -0.716 5.716 22 C -0.228 4.228 23 H 0.048 0.952 24 C -0.040 4.040 25 N -0.923 5.923 26 Si 0.931 3.069 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.309 1.309 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.106 0.894 37 H 0.194 0.806 38 H 0.161 0.839 39 H 0.148 0.852 40 H 0.402 0.598 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.035 0.965 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.050 0.950 47 H 0.027 0.973 48 H 0.067 0.933 49 H 0.376 0.624 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.547 1.099 1.939 10.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.008 3.992 3 C -0.200 4.200 4 O -0.200 6.200 5 C 0.166 3.834 6 N -0.288 5.288 7 C -0.004 4.004 8 C -0.234 4.234 9 C 0.024 3.976 10 C -0.245 4.245 11 C 0.356 3.644 12 O -0.461 6.461 13 N -0.341 5.341 14 C 0.043 3.957 15 H 0.070 0.930 16 C -0.209 4.209 17 C -0.157 4.157 18 C 0.053 3.947 19 H 0.042 0.958 20 C -0.212 4.212 21 N -0.359 5.359 22 C -0.361 4.361 23 H 0.066 0.934 24 C -0.235 4.235 25 N -0.573 5.573 26 Si 0.764 3.236 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.238 1.238 30 H 0.115 0.885 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.125 0.875 37 H 0.211 0.789 38 H 0.178 0.822 39 H 0.165 0.835 40 H 0.240 0.760 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.054 0.946 44 H 0.127 0.873 45 H 0.098 0.902 46 H 0.069 0.931 47 H 0.046 0.954 48 H 0.086 0.914 49 H 0.210 0.790 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.788 2.702 1.475 11.218 hybrid contribution 1.402 -0.818 -0.767 1.796 sum -9.386 1.883 0.708 9.599 Atomic orbital electron populations 1.22111 0.93392 1.02211 1.03413 1.22645 0.95712 0.93523 0.87338 1.21875 1.00998 0.93213 1.03885 1.86546 1.79063 1.15602 1.38748 1.19982 0.89289 0.84946 0.89149 1.67363 1.24802 1.13630 1.23040 1.23162 0.90238 0.87102 0.99905 1.22086 1.04790 1.03134 0.93351 1.21678 0.85372 0.91090 0.99412 1.20122 1.13841 0.95499 0.95026 1.17922 0.76511 0.86176 0.83755 1.90687 1.55287 1.15566 1.84517 1.45847 1.65292 1.12017 1.10941 1.20929 0.95790 0.96094 0.82932 0.92996 1.22098 0.96247 1.02556 0.99971 1.22123 0.93272 1.01140 0.99134 1.20483 0.94096 0.94076 0.86040 0.95771 1.22253 0.98956 1.00780 0.99191 1.42423 1.38900 1.45657 1.08935 1.19163 1.09434 1.15594 0.91895 0.93400 1.24785 1.00277 1.00162 0.98234 1.69505 1.34274 1.27789 1.25707 0.85896 0.79929 0.75946 0.81819 1.21596 1.21573 1.23794 0.88482 0.93311 0.92471 0.90261 0.92079 0.93635 0.87496 0.78877 0.82179 0.83452 0.75958 0.91145 0.89529 0.94611 0.87331 0.90234 0.93075 0.95364 0.91379 0.78962 0.93753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.53 71.98 0.69 -3.29 16 2 C 0.06 2.03 3.11 30.60 0.10 2.12 16 3 C -0.14 -3.87 9.56 71.98 0.69 -3.18 16 4 O -0.29 -12.27 7.86 -66.46 -0.52 -12.79 16 5 C 0.35 14.37 7.47 85.13 0.64 15.01 16 6 N -0.56 -20.25 8.64 -307.99 -2.66 -22.91 16 7 C 0.15 4.57 11.17 84.71 0.95 5.52 16 8 C -0.21 -6.73 10.09 22.32 0.23 -6.50 16 9 C 0.05 1.89 7.97 22.72 0.18 2.07 16 10 C -0.24 -10.07 5.90 -19.91 -0.12 -10.19 16 11 C 0.57 25.11 7.74 86.69 0.67 25.78 16 12 O -0.58 -28.83 14.85 16.84 0.25 -28.58 16 13 N -0.69 -25.69 3.76 -445.70 -1.67 -27.37 16 14 C 0.15 4.76 2.57 44.99 0.12 4.87 16 15 H 0.05 2.01 7.58 -2.39 -0.02 1.99 16 16 C -0.15 -3.92 9.48 71.98 0.68 -3.24 16 17 C -0.12 -3.26 4.43 30.59 0.14 -3.12 16 18 C 0.16 5.81 2.89 44.99 0.13 5.94 16 19 H 0.02 0.98 8.08 -2.38 -0.02 0.96 16 20 C -0.15 -4.85 9.49 71.98 0.68 -4.17 16 21 N -0.72 -31.40 3.84 -322.93 -1.24 -32.64 16 22 C -0.23 -11.87 9.93 84.03 0.83 -11.04 16 23 H 0.05 2.61 7.83 -2.91 -0.02 2.59 16 24 C -0.04 -2.07 5.50 84.86 0.47 -1.60 16 25 N -0.92 -45.71 10.75 21.65 0.23 -45.48 16 26 Si 0.93 45.50 29.55 68.60 2.03 47.52 16 27 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 28 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 29 H -0.31 -16.02 7.11 99.48 0.71 -15.32 16 30 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 2.56 6.98 -2.39 -0.02 2.55 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.19 4.06 8.06 -2.91 -0.02 4.04 16 38 H 0.16 4.17 8.06 -2.91 -0.02 4.14 16 39 H 0.15 5.47 5.95 -2.91 -0.02 5.45 16 40 H 0.40 14.52 4.61 -92.71 -0.43 14.09 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 45 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 47 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 49 H 0.38 16.39 5.70 -92.71 -0.53 15.86 16 50 H 0.25 12.43 8.31 -92.70 -0.77 11.66 16 Total: -1.00 -66.61 402.56 3.45 -63.16 By element: Atomic # 1 Polarization: 44.12 SS G_CDS: -0.02 Total: 44.10 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 7.06 Total: 14.99 kcal Atomic # 7 Polarization: -123.05 SS G_CDS: -5.34 Total: -128.39 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -0.27 Total: -41.38 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -66.61 3.45 -63.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146886198.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.440 kcal (2) G-P(sol) polarization free energy of solvation -66.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds