Wall clock time and date at job start Tue Mar 31 2020 19:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 O 1.42906 * 109.46748 * 119.99818 * 2 1 3 5 5 C 1.35432 * 116.99508 * 90.00020 * 4 2 1 6 6 N 1.32227 * 119.80290 * 0.02562 * 5 4 2 7 7 C 1.31886 * 121.80344 * 179.97438 * 6 5 4 8 8 C 1.38350 * 121.18241 * 0.02562 * 7 6 5 9 9 C 1.38343 * 119.45859 * 359.97438 * 8 7 6 10 10 C 1.39984 * 118.34828 * 359.75192 * 9 8 7 11 11 C 1.47524 * 120.59791 * 180.26367 * 10 9 8 12 12 O 1.21586 * 120.00064 * 180.24869 * 11 10 9 13 13 N 1.34775 * 120.00108 * 0.25095 * 11 10 9 14 14 C 1.46491 * 120.00360 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47146 * 325.00142 * 14 13 11 16 16 C 1.53004 * 109.47308 * 84.99844 * 14 13 11 17 17 C 1.52998 * 109.47367 * 205.00007 * 14 13 11 18 18 C 1.53003 * 109.47401 * 65.00082 * 17 14 13 19 19 H 1.08997 * 109.46438 * 305.00239 * 18 17 14 20 20 C 1.52992 * 109.47380 * 184.99997 * 18 17 14 21 21 N 1.46498 * 109.46991 * 64.99901 * 18 17 14 22 22 C 1.36943 * 120.00068 * 205.00454 * 21 18 17 23 23 H 1.08005 * 119.99531 * 359.97438 * 22 21 18 24 24 C 1.38805 * 120.00337 * 180.02562 * 22 21 18 25 25 N 1.31620 * 119.99801 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00343 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47406 * 89.99671 * 26 24 22 28 28 H 1.48497 * 109.47187 * 209.99688 * 26 24 22 29 29 H 1.48504 * 109.46834 * 329.99777 * 26 24 22 30 30 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 33 33 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 34 34 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 35 35 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 37 37 H 1.07998 * 119.40871 * 179.97438 * 7 6 5 38 38 H 1.08002 * 120.27180 * 179.97438 * 8 7 6 39 39 H 1.08001 * 120.82458 * 180.02562 * 9 8 7 40 40 H 0.97003 * 119.99741 * 359.97438 * 13 11 10 41 41 H 1.09001 * 109.47399 * 180.02562 * 16 14 13 42 42 H 1.08996 * 109.46735 * 300.00580 * 16 14 13 43 43 H 1.09000 * 109.46773 * 60.00071 * 16 14 13 44 44 H 1.09001 * 109.47139 * 184.99971 * 17 14 13 45 45 H 1.08999 * 109.47052 * 305.00117 * 17 14 13 46 46 H 1.09003 * 109.47254 * 60.00282 * 20 18 17 47 47 H 1.09003 * 109.47390 * 179.97438 * 20 18 17 48 48 H 1.08995 * 109.47193 * 299.99988 * 20 18 17 49 49 H 0.96994 * 120.00445 * 25.00083 * 21 18 17 50 50 H 0.96998 * 120.00036 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2112 -2.0085 1.0655 6 7 1.9704 -2.6253 -0.0791 7 6 2.1566 -3.9231 -0.2218 8 6 2.6145 -4.7007 0.8268 9 6 2.8827 -4.1073 2.0474 10 6 2.6832 -2.7275 2.1737 11 6 2.9591 -2.0427 3.4510 12 8 2.7776 -0.8445 3.5499 13 7 3.4122 -2.7452 4.5081 14 6 3.6867 -2.0652 5.7762 15 1 4.0739 -1.0661 5.5764 16 6 2.3941 -1.9581 6.5878 17 6 4.7224 -2.8643 6.5698 18 6 6.0532 -2.8656 5.8149 19 1 5.8968 -3.2405 4.8035 20 6 7.0522 -3.7663 6.5440 21 7 6.5811 -1.5004 5.7535 22 6 7.4381 -1.1422 4.7472 23 1 7.7250 -1.8664 3.9990 24 6 7.9386 0.1511 4.6892 25 7 7.5893 1.0335 5.6012 26 14 9.1081 0.6394 3.3169 27 1 8.3291 1.1548 2.1625 28 1 10.0291 1.6974 3.8045 29 1 9.8959 -0.5458 2.8928 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.9471 -4.3873 -1.1742 38 1 2.7614 -5.7624 0.6937 39 1 3.2414 -4.6932 2.8807 40 1 3.5566 -3.7012 4.4292 41 1 2.5982 -1.4517 7.5312 42 1 1.6563 -1.3889 6.0225 43 1 2.0068 -2.9572 6.7877 44 1 4.8609 -2.4073 7.5496 45 1 4.3736 -3.8896 6.6930 46 1 6.6595 -4.7821 6.5896 47 1 8.0002 -3.7676 6.0060 48 1 7.2086 -3.3913 7.5554 49 1 6.3236 -0.8501 6.4255 50 1 7.9394 1.9372 5.5610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146886200.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:38 Heat of formation + Delta-G solvation = -60.660320 kcal Electronic energy + Delta-G solvation = -30199.365614 eV Core-core repulsion = 26226.114545 eV Total energy + Delta-G solvation = -3973.251068 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.95869 -40.42596 -39.20848 -38.22522 -36.03888 -34.26575 -34.25378 -33.66563 -31.92106 -30.98138 -30.37007 -28.24730 -27.58639 -25.82337 -25.59907 -24.75700 -22.68166 -22.26707 -21.58908 -21.15927 -19.63892 -19.29466 -18.50956 -17.95801 -17.01159 -16.86074 -16.54934 -16.09077 -15.87894 -15.63464 -15.62724 -15.40630 -15.21600 -14.83622 -14.50161 -14.25604 -14.19103 -13.98860 -13.60196 -13.39766 -13.34364 -13.32331 -13.24809 -13.16275 -12.95015 -12.90731 -12.80134 -12.65406 -12.24167 -12.19366 -11.96068 -11.83095 -11.78763 -11.55731 -11.40859 -11.08013 -10.99049 -10.92539 -10.51644 -9.98532 -9.48042 -8.94415 -7.92685 -5.17456 -0.28673 0.26991 1.38690 1.42461 1.48615 1.97020 2.02832 2.23296 2.54758 2.85794 3.26045 3.41997 3.73496 3.77865 3.85728 3.90733 3.97397 3.99701 4.03653 4.14872 4.19433 4.24058 4.42254 4.53787 4.56811 4.61296 4.70121 4.74392 4.76914 4.80381 4.82265 4.84214 4.90907 4.96227 5.05352 5.09662 5.12002 5.14748 5.18034 5.25185 5.36125 5.44144 5.49137 5.51427 5.65243 5.69200 6.30867 6.31057 6.63718 6.80267 7.36395 7.40047 8.17790 8.36470 9.31317 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009001 B = 0.004164 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.874093 B = 6723.134731 C = 7940.189563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.068 3.932 3 C -0.148 4.148 4 O -0.299 6.299 5 C 0.347 3.653 6 N -0.560 5.560 7 C 0.160 3.840 8 C -0.206 4.206 9 C -0.004 4.004 10 C -0.238 4.238 11 C 0.554 3.446 12 O -0.569 6.569 13 N -0.699 5.699 14 C 0.148 3.852 15 H 0.043 0.957 16 C -0.150 4.150 17 C -0.117 4.117 18 C 0.163 3.837 19 H 0.042 0.958 20 C -0.155 4.155 21 N -0.732 5.732 22 C -0.223 4.223 23 H 0.069 0.931 24 C -0.078 4.078 25 N -0.969 5.969 26 Si 0.958 3.042 27 H -0.300 1.300 28 H -0.293 1.293 29 H -0.265 1.265 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.108 0.892 37 H 0.203 0.797 38 H 0.189 0.811 39 H 0.174 0.826 40 H 0.409 0.591 41 H 0.069 0.931 42 H 0.032 0.968 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.111 0.889 46 H 0.079 0.921 47 H 0.028 0.972 48 H 0.041 0.959 49 H 0.369 0.631 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.979 -17.102 -9.430 25.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.013 3.987 3 C -0.205 4.205 4 O -0.205 6.205 5 C 0.168 3.832 6 N -0.284 5.284 7 C 0.003 3.997 8 C -0.225 4.225 9 C -0.030 4.030 10 C -0.245 4.245 11 C 0.341 3.659 12 O -0.448 6.448 13 N -0.352 5.352 14 C 0.044 3.956 15 H 0.061 0.939 16 C -0.208 4.208 17 C -0.155 4.155 18 C 0.055 3.945 19 H 0.060 0.940 20 C -0.215 4.215 21 N -0.372 5.372 22 C -0.356 4.356 23 H 0.087 0.913 24 C -0.270 4.270 25 N -0.620 5.620 26 Si 0.788 3.212 27 H -0.228 1.228 28 H -0.220 1.220 29 H -0.190 1.190 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.127 0.873 37 H 0.220 0.780 38 H 0.206 0.794 39 H 0.191 0.809 40 H 0.247 0.753 41 H 0.088 0.912 42 H 0.051 0.949 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.129 0.871 46 H 0.098 0.902 47 H 0.048 0.952 48 H 0.060 0.940 49 H 0.201 0.799 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -16.259 -15.560 -9.953 24.607 hybrid contribution 1.184 0.637 0.154 1.353 sum -15.075 -14.923 -9.798 23.366 Atomic orbital electron populations 1.22126 0.93323 1.02443 1.03365 1.22640 0.95665 0.93176 0.87263 1.21915 1.01041 0.93850 1.03723 1.86600 1.78633 1.16145 1.39082 1.20121 0.88792 0.84978 0.89339 1.67454 1.23643 1.14462 1.22857 1.23479 0.88795 0.86644 1.00781 1.22395 1.03755 1.03939 0.92419 1.22049 0.90576 0.90358 0.99972 1.20171 1.14062 0.96173 0.94060 1.18253 0.77098 0.86419 0.84114 1.90816 1.53324 1.16366 1.84334 1.45656 1.66634 1.11970 1.10978 1.20816 0.95362 0.96503 0.82952 0.93914 1.22074 0.96270 1.02919 0.99545 1.22083 0.93116 1.01738 0.98554 1.20537 0.92078 0.84771 0.97091 0.93962 1.22296 0.99493 0.99796 0.99903 1.42612 1.54494 1.08941 1.31184 1.19493 1.17716 0.94688 1.03684 0.91310 1.25408 1.03609 0.96849 1.01159 1.69796 1.50329 1.04122 1.37774 0.85356 0.78848 0.77923 0.79069 1.22819 1.21968 1.19005 0.88400 0.92720 0.92970 0.89245 0.92793 0.93726 0.87299 0.78027 0.79413 0.80878 0.75301 0.91160 0.94874 0.89663 0.90535 0.87111 0.90187 0.95247 0.93959 0.79894 0.94442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 9.53 71.98 0.69 -2.88 16 2 C 0.07 1.95 3.11 30.60 0.10 2.04 16 3 C -0.15 -4.00 9.56 71.98 0.69 -3.31 16 4 O -0.30 -11.25 7.86 -66.46 -0.52 -11.77 16 5 C 0.35 11.39 7.47 85.13 0.64 12.03 16 6 N -0.56 -14.34 8.64 -308.01 -2.66 -17.00 16 7 C 0.16 2.59 11.17 84.71 0.95 3.53 16 8 C -0.21 -2.70 10.09 22.32 0.23 -2.48 16 9 C 0.00 -0.07 9.64 22.72 0.22 0.15 16 10 C -0.24 -7.33 5.90 -19.91 -0.12 -7.45 16 11 C 0.55 20.98 7.74 86.69 0.67 21.65 16 12 O -0.57 -28.07 14.85 16.83 0.25 -27.82 16 13 N -0.70 -21.09 4.40 -445.73 -1.96 -23.05 16 14 C 0.15 4.97 2.52 44.99 0.11 5.08 16 15 H 0.04 2.01 7.05 -2.39 -0.02 2.00 16 16 C -0.15 -4.18 9.48 71.98 0.68 -3.49 16 17 C -0.12 -3.32 4.29 30.59 0.13 -3.19 16 18 C 0.16 6.00 2.84 44.99 0.13 6.13 16 19 H 0.04 1.58 7.56 -2.39 -0.02 1.56 16 20 C -0.16 -5.00 9.49 71.98 0.68 -4.32 16 21 N -0.73 -37.25 4.49 -322.95 -1.45 -38.70 16 22 C -0.22 -12.89 9.93 84.03 0.83 -12.05 16 23 H 0.07 3.85 7.83 -2.91 -0.02 3.82 16 24 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 25 N -0.97 -62.76 13.06 21.65 0.28 -62.48 16 26 Si 0.96 49.40 29.55 68.60 2.03 51.43 16 27 H -0.30 -15.78 7.11 99.48 0.71 -15.07 16 28 H -0.29 -15.05 7.11 99.48 0.71 -14.34 16 29 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 30 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 2.41 6.98 -2.39 -0.02 2.40 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.20 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.19 0.76 8.06 -2.91 -0.02 0.74 16 39 H 0.17 1.99 6.52 -2.91 -0.02 1.97 16 40 H 0.41 8.59 6.70 -92.71 -0.62 7.97 16 41 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 47 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.37 20.59 7.80 -92.71 -0.72 19.86 16 50 H 0.25 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -87.40 411.29 2.65 -84.76 By element: Atomic # 1 Polarization: 37.91 SS G_CDS: -0.41 Total: 37.50 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 7.09 Total: 7.14 kcal Atomic # 7 Polarization: -135.45 SS G_CDS: -5.79 Total: -141.24 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -0.27 Total: -39.59 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.03 Total: 51.43 kcal Total: -87.40 2.65 -84.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146886200.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.096 kcal (2) G-P(sol) polarization free energy of solvation -87.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds