Wall clock time and date at job start Tue Mar 31 2020 19:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09002 * 109.47047 * 2 1 4 4 C 1.53000 * 109.46967 * 239.99359 * 2 1 3 5 5 C 1.50694 * 109.47080 * 65.00442 * 4 2 1 6 6 O 1.21285 * 120.00402 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99991 * 179.97438 * 5 4 2 8 8 C 1.46501 * 120.00002 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47074 * 179.97438 * 8 7 5 10 10 H 1.09009 * 108.56910 * 60.00068 * 9 8 7 11 11 C 1.46914 * 108.50984 * 177.87910 * 9 8 7 12 12 N 1.50117 * 106.77993 * 177.84211 * 11 9 8 13 13 C 1.36935 * 120.63610 * 111.32627 * 12 11 9 14 14 H 1.08006 * 120.00099 * 320.51931 * 13 12 11 15 15 C 1.38811 * 120.00135 * 140.52746 * 13 12 11 16 16 N 1.31617 * 120.00362 * 156.55581 * 15 13 12 17 17 Si 1.86799 * 119.99625 * 336.54608 * 15 13 12 18 18 H 1.48501 * 109.47083 * 95.55910 * 17 15 13 19 19 H 1.48502 * 109.47305 * 215.55638 * 17 15 13 20 20 H 1.48501 * 109.47607 * 335.55872 * 17 15 13 21 21 C 1.43426 * 118.72843 * 291.34658 * 12 11 9 22 22 C 1.55339 * 116.23560 * 89.35215 * 21 12 11 23 23 C 1.55184 * 108.87389 * 319.46697 * 22 21 12 24 24 O 1.39642 * 110.56917 * 322.14365 * 23 22 21 25 25 N 1.46500 * 109.46517 * 119.99304 * 2 1 3 26 26 C 1.36349 * 125.63612 * 59.70232 * 25 2 1 27 27 C 1.34845 * 108.21641 * 179.82656 * 26 25 2 28 28 C 1.40887 * 107.41868 * 0.41754 * 27 26 25 29 29 C 1.34850 * 107.42141 * 359.73838 * 28 27 26 30 30 H 1.09001 * 109.46676 * 60.00420 * 1 2 3 31 31 H 1.09002 * 109.47047 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46903 * 300.00688 * 1 2 3 33 33 H 1.09002 * 109.47430 * 304.99917 * 4 2 1 34 34 H 1.08998 * 109.46876 * 185.00341 * 4 2 1 35 35 H 0.96991 * 119.99829 * 359.97438 * 7 5 4 36 36 H 1.09004 * 109.47006 * 59.99938 * 8 7 5 37 37 H 1.08998 * 109.47171 * 299.99868 * 8 7 5 38 38 H 1.09003 * 109.99480 * 297.16311 * 11 9 8 39 39 H 1.09004 * 109.99164 * 58.52829 * 11 9 8 40 40 H 0.97001 * 120.00087 * 179.97438 * 16 15 13 41 41 H 1.08997 * 108.12558 * 327.60176 * 21 12 11 42 42 H 1.08990 * 107.96665 * 210.98594 * 21 12 11 43 43 H 1.08995 * 109.56916 * 199.64643 * 22 21 12 44 44 H 1.09001 * 109.56628 * 79.28653 * 22 21 12 45 45 H 1.09001 * 109.25711 * 201.86225 * 23 22 21 46 46 H 1.08998 * 109.25852 * 82.42503 * 23 22 21 47 47 H 1.08000 * 125.88925 * 359.94864 * 26 25 2 48 48 H 1.08001 * 126.29076 * 180.16028 * 27 26 25 49 49 H 1.07999 * 126.29333 * 179.73715 * 28 27 26 50 50 H 1.07992 * 125.89910 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6415 0.0568 -2.4765 6 8 1.0111 1.0868 -2.3634 7 7 1.9855 -0.3918 -3.7001 8 6 1.5985 0.3651 -4.8932 9 6 2.1094 -0.3557 -6.1423 10 1 1.6666 -1.3513 -6.1742 11 6 1.6667 0.3926 -7.3265 12 7 2.2322 -0.3157 -8.5232 13 6 1.4101 -0.9795 -9.3942 14 1 0.5727 -1.5491 -9.0188 15 6 1.6529 -0.9205 -10.7596 16 7 1.2013 -1.8710 -11.5501 17 14 2.6205 0.5082 -11.4752 18 1 4.0480 0.1215 -11.6090 19 1 2.0745 0.8558 -12.8118 20 1 2.5083 1.6830 -10.5739 21 6 3.6501 -0.2842 -8.7366 22 6 4.4701 -1.4236 -8.0714 23 6 3.9015 -1.6886 -6.6520 24 8 3.5233 -0.4901 -6.0433 25 7 2.0183 -0.6905 1.1963 26 6 1.7559 -1.9867 1.5281 27 6 2.3798 -2.2585 2.6922 28 6 3.0440 -1.0844 3.0988 29 6 2.8055 -0.1415 2.1647 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6055 -1.7200 -1.2950 34 1 3.1264 -0.7997 -1.2055 35 1 2.4899 -1.2152 -3.7905 36 1 2.0332 1.3636 -4.8470 37 1 0.5122 0.4434 -4.9373 38 1 0.5779 0.3994 -7.3776 39 1 2.0451 1.4140 -7.2849 40 1 1.3707 -1.8296 -12.5043 41 1 4.0281 0.6677 -8.3637 42 1 3.8293 -0.3202 -9.8111 43 1 5.5156 -1.1249 -7.9960 44 1 4.3899 -2.3296 -8.6720 45 1 4.6642 -2.1755 -6.0443 46 1 3.0327 -2.3424 -6.7291 47 1 1.1540 -2.6773 0.9560 48 1 2.3687 -3.2015 3.2185 49 1 3.6355 -0.9620 3.9941 50 1 3.1746 0.8733 2.1807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150613702.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:24 Heat of formation + Delta-G solvation = 2.713371 kcal Electronic energy + Delta-G solvation = -29267.489640 eV Core-core repulsion = 25296.986661 eV Total energy + Delta-G solvation = -3970.502979 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.49596 -40.12531 -39.24354 -35.65511 -35.28878 -34.76739 -32.44079 -31.81627 -30.22480 -29.22512 -28.91842 -28.16609 -25.92657 -25.38558 -23.23044 -22.37867 -21.32697 -20.80096 -20.48595 -20.09074 -19.60695 -17.90604 -17.20728 -16.91862 -16.30949 -15.97986 -15.78761 -15.58201 -14.98465 -14.76020 -14.62719 -14.24812 -14.12979 -13.87291 -13.76677 -13.24542 -13.16754 -13.10658 -12.82060 -12.52710 -12.48649 -12.44297 -12.27919 -12.09176 -11.95196 -11.72748 -11.66758 -11.45596 -11.30909 -10.84522 -10.58922 -10.46255 -10.28875 -10.07331 -9.80543 -9.68918 -9.17098 -9.09720 -8.82452 -8.57398 -8.35160 -6.91030 -6.12192 -3.57000 2.07733 2.41784 2.54705 2.87846 3.19090 3.26537 3.41197 3.47914 4.13239 4.14732 4.39989 4.43701 4.56385 4.67708 4.77908 4.86791 5.02674 5.05435 5.11677 5.14273 5.26894 5.28047 5.33136 5.41536 5.51175 5.52807 5.60743 5.64363 5.69809 5.77305 5.87851 5.89111 5.95776 6.07123 6.09831 6.14106 6.18113 6.34521 6.41295 6.49350 6.53643 6.72832 6.78965 6.80646 7.05541 7.18628 7.33244 7.54000 7.96111 8.02442 8.22319 8.87533 9.58650 10.02970 11.02576 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027054 B = 0.002110 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.715815 B =13268.585856 C =13583.020561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.149 3.851 3 H 0.106 0.894 4 C -0.153 4.153 5 C 0.517 3.483 6 O -0.542 6.542 7 N -0.716 5.716 8 C 0.115 3.885 9 C 0.062 3.938 10 H 0.069 0.931 11 C 0.112 3.888 12 N -0.598 5.598 13 C -0.276 4.276 14 H 0.076 0.924 15 C 0.043 3.957 16 N -0.894 5.894 17 Si 0.879 3.121 18 H -0.285 1.285 19 H -0.300 1.300 20 H -0.269 1.269 21 C 0.151 3.849 22 C -0.169 4.169 23 C 0.065 3.935 24 O -0.356 6.356 25 N -0.443 5.443 26 C -0.014 4.014 27 C -0.204 4.204 28 C -0.205 4.205 29 C -0.015 4.015 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.403 0.597 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.265 0.735 41 H 0.032 0.968 42 H 0.043 0.957 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.157 0.843 48 H 0.132 0.868 49 H 0.132 0.868 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.069 0.377 23.507 23.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.047 3.953 3 H 0.124 0.876 4 C -0.193 4.193 5 C 0.302 3.698 6 O -0.421 6.421 7 N -0.366 5.366 8 C -0.009 4.009 9 C 0.003 3.997 10 H 0.087 0.913 11 C -0.013 4.013 12 N -0.321 5.321 13 C -0.404 4.404 14 H 0.094 0.906 15 C -0.159 4.159 16 N -0.533 5.533 17 Si 0.709 3.291 18 H -0.213 1.213 19 H -0.228 1.228 20 H -0.194 1.194 21 C 0.024 3.976 22 C -0.210 4.210 23 C -0.012 4.012 24 O -0.274 6.274 25 N -0.119 5.119 26 C -0.144 4.144 27 C -0.229 4.229 28 C -0.230 4.230 29 C -0.145 4.145 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.237 0.763 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.174 0.826 48 H 0.150 0.850 49 H 0.150 0.850 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.553 1.385 23.141 23.323 hybrid contribution 0.835 0.000 -0.819 1.170 sum 3.389 1.385 22.322 22.620 Atomic orbital electron populations 1.22294 0.92740 1.02870 1.04504 1.21097 0.96073 0.96627 0.81503 0.87566 1.22007 1.03947 1.00885 0.92502 1.20222 0.79453 0.85618 0.84468 1.90694 1.40220 1.24531 1.86622 1.45900 1.57112 1.27933 1.05677 1.21751 1.00135 0.96123 0.82871 1.21999 0.82521 1.00764 0.94444 0.91277 1.21047 0.98932 0.94700 0.86615 1.44099 1.00925 1.59944 1.27098 1.18683 1.11552 1.24052 0.86143 0.90644 1.25525 0.97393 0.96804 0.96196 1.69879 1.47606 1.30997 1.04862 0.86882 0.78996 0.85348 0.77901 1.21313 1.22792 1.19376 1.20635 0.84269 0.94922 0.97797 1.23498 0.98963 1.01974 0.96519 1.22429 0.99260 0.86108 0.93431 1.87595 1.21207 1.41504 1.77110 1.44374 1.39096 1.10320 1.18060 1.21741 1.06599 0.86326 0.99754 1.20886 1.04629 0.99328 0.98062 1.20883 1.06932 0.93959 1.01205 1.21864 1.01307 0.99782 0.91521 0.88551 0.92311 0.91960 0.88137 0.88059 0.76252 0.90732 0.90147 0.90030 0.93826 0.92540 0.94946 0.93889 0.92614 0.91514 0.92102 0.92358 0.82555 0.84986 0.84977 0.82410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 8.97 37.16 0.33 -1.10 16 2 C 0.15 1.26 2.67 -67.92 -0.18 1.08 16 3 H 0.11 0.95 7.88 -51.93 -0.41 0.55 16 4 C -0.15 -1.19 5.17 -27.89 -0.14 -1.34 16 5 C 0.52 5.56 7.55 -10.99 -0.08 5.48 16 6 O -0.54 -7.49 13.97 5.55 0.08 -7.41 16 7 N -0.72 -7.67 5.41 -60.29 -0.33 -7.99 16 8 C 0.12 1.47 5.24 -4.04 -0.02 1.45 16 9 C 0.06 0.93 2.13 -29.65 -0.06 0.87 16 10 H 0.07 1.06 6.77 -51.92 -0.35 0.71 16 11 C 0.11 2.03 5.58 -4.93 -0.03 2.00 16 12 N -0.60 -13.36 2.16 -174.50 -0.38 -13.74 16 13 C -0.28 -7.28 9.93 -15.06 -0.15 -7.43 16 14 H 0.08 2.13 8.06 -52.48 -0.42 1.71 16 15 C 0.04 1.18 5.27 -17.43 -0.09 1.09 16 16 N -0.89 -26.25 13.97 55.49 0.78 -25.47 16 17 Si 0.88 21.78 25.24 -169.99 -4.29 17.49 16 18 H -0.29 -6.93 6.74 56.52 0.38 -6.55 16 19 H -0.30 -7.54 7.11 56.52 0.40 -7.13 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.15 3.22 4.31 -4.43 -0.02 3.20 16 22 C -0.17 -3.01 6.75 -24.33 -0.16 -3.18 16 23 C 0.07 1.00 6.38 38.31 0.24 1.25 16 24 O -0.36 -5.53 9.44 -31.94 -0.30 -5.84 16 25 N -0.44 -3.95 2.62 -110.02 -0.29 -4.23 16 26 C -0.01 -0.13 10.45 -16.75 -0.18 -0.30 16 27 C -0.20 -1.91 10.86 -39.78 -0.43 -2.34 16 28 C -0.21 -1.92 10.86 -39.78 -0.43 -2.35 16 29 C -0.01 -0.14 11.39 -16.75 -0.19 -0.33 16 30 H 0.10 0.98 5.95 -51.93 -0.31 0.67 16 31 H 0.06 0.45 7.91 -51.93 -0.41 0.04 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.64 8.06 -51.93 -0.42 0.22 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.40 3.70 8.26 -40.82 -0.34 3.36 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.08 1.43 8.00 -51.93 -0.42 1.02 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.03 0.66 7.99 -51.93 -0.41 0.25 16 42 H 0.04 1.01 3.44 -51.93 -0.18 0.84 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.94 6.66 -51.93 -0.35 0.59 16 47 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 48 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 49 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 50 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 391.91 15.07 5.91 5.91 Total: -1.00 -31.31 391.91 -8.66 -39.98 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -8.24 Total: 3.26 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -1.60 Total: -1.95 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.22 Total: -51.44 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.22 Total: -13.25 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.29 Total: 17.49 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.31 -8.66 -39.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150613702.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.689 kcal (2) G-P(sol) polarization free energy of solvation -31.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds