Wall clock time and date at job start Tue Mar 31 2020 19:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09002 * 109.47047 * 2 1 4 4 C 1.53000 * 109.46967 * 239.99359 * 2 1 3 5 5 C 1.50694 * 109.47080 * 65.00442 * 4 2 1 6 6 O 1.21285 * 120.00402 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99991 * 179.97438 * 5 4 2 8 8 C 1.46501 * 120.00002 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47074 * 179.97438 * 8 7 5 10 10 H 1.09009 * 108.56910 * 60.00068 * 9 8 7 11 11 C 1.46914 * 108.50984 * 177.87910 * 9 8 7 12 12 N 1.50117 * 106.77993 * 177.84211 * 11 9 8 13 13 C 1.36935 * 120.63610 * 111.32627 * 12 11 9 14 14 H 1.08006 * 120.00099 * 320.51931 * 13 12 11 15 15 C 1.38811 * 120.00135 * 140.52746 * 13 12 11 16 16 N 1.31617 * 120.00362 * 156.55581 * 15 13 12 17 17 Si 1.86799 * 119.99625 * 336.54608 * 15 13 12 18 18 H 1.48501 * 109.47083 * 95.55910 * 17 15 13 19 19 H 1.48502 * 109.47305 * 215.55638 * 17 15 13 20 20 H 1.48501 * 109.47607 * 335.55872 * 17 15 13 21 21 C 1.43426 * 118.72843 * 291.34658 * 12 11 9 22 22 C 1.55339 * 116.23560 * 89.35215 * 21 12 11 23 23 C 1.55184 * 108.87389 * 319.46697 * 22 21 12 24 24 O 1.39642 * 110.56917 * 322.14365 * 23 22 21 25 25 N 1.46500 * 109.46517 * 119.99304 * 2 1 3 26 26 C 1.36349 * 125.63612 * 59.70232 * 25 2 1 27 27 C 1.34845 * 108.21641 * 179.82656 * 26 25 2 28 28 C 1.40887 * 107.41868 * 0.41754 * 27 26 25 29 29 C 1.34850 * 107.42141 * 359.73838 * 28 27 26 30 30 H 1.09001 * 109.46676 * 60.00420 * 1 2 3 31 31 H 1.09002 * 109.47047 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46903 * 300.00688 * 1 2 3 33 33 H 1.09002 * 109.47430 * 304.99917 * 4 2 1 34 34 H 1.08998 * 109.46876 * 185.00341 * 4 2 1 35 35 H 0.96991 * 119.99829 * 359.97438 * 7 5 4 36 36 H 1.09004 * 109.47006 * 59.99938 * 8 7 5 37 37 H 1.08998 * 109.47171 * 299.99868 * 8 7 5 38 38 H 1.09003 * 109.99480 * 297.16311 * 11 9 8 39 39 H 1.09004 * 109.99164 * 58.52829 * 11 9 8 40 40 H 0.97001 * 120.00087 * 179.97438 * 16 15 13 41 41 H 1.08997 * 108.12558 * 327.60176 * 21 12 11 42 42 H 1.08990 * 107.96665 * 210.98594 * 21 12 11 43 43 H 1.08995 * 109.56916 * 199.64643 * 22 21 12 44 44 H 1.09001 * 109.56628 * 79.28653 * 22 21 12 45 45 H 1.09001 * 109.25711 * 201.86225 * 23 22 21 46 46 H 1.08998 * 109.25852 * 82.42503 * 23 22 21 47 47 H 1.08000 * 125.88925 * 359.94864 * 26 25 2 48 48 H 1.08001 * 126.29076 * 180.16028 * 27 26 25 49 49 H 1.07999 * 126.29333 * 179.73715 * 28 27 26 50 50 H 1.07992 * 125.89910 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6415 0.0568 -2.4765 6 8 1.0111 1.0868 -2.3634 7 7 1.9855 -0.3918 -3.7001 8 6 1.5985 0.3651 -4.8932 9 6 2.1094 -0.3557 -6.1423 10 1 1.6666 -1.3513 -6.1742 11 6 1.6667 0.3926 -7.3265 12 7 2.2322 -0.3157 -8.5232 13 6 1.4101 -0.9795 -9.3942 14 1 0.5727 -1.5491 -9.0188 15 6 1.6529 -0.9205 -10.7596 16 7 1.2013 -1.8710 -11.5501 17 14 2.6205 0.5082 -11.4752 18 1 4.0480 0.1215 -11.6090 19 1 2.0745 0.8558 -12.8118 20 1 2.5083 1.6830 -10.5739 21 6 3.6501 -0.2842 -8.7366 22 6 4.4701 -1.4236 -8.0714 23 6 3.9015 -1.6886 -6.6520 24 8 3.5233 -0.4901 -6.0433 25 7 2.0183 -0.6905 1.1963 26 6 1.7559 -1.9867 1.5281 27 6 2.3798 -2.2585 2.6922 28 6 3.0440 -1.0844 3.0988 29 6 2.8055 -0.1415 2.1647 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6055 -1.7200 -1.2950 34 1 3.1264 -0.7997 -1.2055 35 1 2.4899 -1.2152 -3.7905 36 1 2.0332 1.3636 -4.8470 37 1 0.5122 0.4434 -4.9373 38 1 0.5779 0.3994 -7.3776 39 1 2.0451 1.4140 -7.2849 40 1 1.3707 -1.8296 -12.5043 41 1 4.0281 0.6677 -8.3637 42 1 3.8293 -0.3202 -9.8111 43 1 5.5156 -1.1249 -7.9960 44 1 4.3899 -2.3296 -8.6720 45 1 4.6642 -2.1755 -6.0443 46 1 3.0327 -2.3424 -6.7291 47 1 1.1540 -2.6773 0.9560 48 1 2.3687 -3.2015 3.2185 49 1 3.6355 -0.9620 3.9941 50 1 3.1746 0.8733 2.1807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150613702.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:23 Heat of formation + Delta-G solvation = -16.405636 kcal Electronic energy + Delta-G solvation = -29268.318702 eV Core-core repulsion = 25296.986661 eV Total energy + Delta-G solvation = -3971.332041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.15615 -41.18350 -40.37230 -37.09016 -36.35458 -35.68739 -33.88612 -33.61369 -31.07409 -30.39253 -29.58998 -29.07728 -27.29808 -26.93232 -24.38743 -23.46507 -22.54729 -21.89953 -21.50714 -21.17874 -20.27833 -18.86606 -18.61440 -17.93639 -17.49976 -17.33719 -17.14619 -16.58109 -16.08950 -16.00347 -15.72559 -15.51043 -15.18916 -14.93746 -14.72480 -14.50167 -14.26445 -14.12072 -13.97497 -13.90476 -13.71526 -13.57323 -13.20955 -13.09510 -12.91520 -12.80648 -12.73739 -12.64805 -12.36704 -12.32787 -12.09410 -12.03050 -11.75474 -11.63579 -11.33469 -10.98804 -10.61259 -10.44400 -10.08901 -9.49173 -9.00697 -8.76466 -8.25015 -5.65133 1.28319 1.38558 1.41926 1.49275 1.59138 1.82703 2.20781 2.38208 2.39376 2.91905 3.01617 3.20997 3.48227 3.72665 3.84413 3.96993 4.02992 4.15606 4.20809 4.23556 4.26729 4.38498 4.44324 4.46072 4.52931 4.57027 4.58556 4.66178 4.70592 4.71883 4.76591 4.81292 4.88468 4.96561 4.97518 5.07542 5.11250 5.15581 5.20072 5.26226 5.42095 5.45901 5.50005 5.91568 6.12519 6.15357 6.29094 6.39923 6.51128 6.55342 6.95041 7.20164 7.57203 8.04924 8.93843 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027054 B = 0.002110 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.715815 B =13268.585856 C =13583.020561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.152 3.848 3 H 0.099 0.901 4 C -0.141 4.141 5 C 0.519 3.481 6 O -0.575 6.575 7 N -0.710 5.710 8 C 0.128 3.872 9 C 0.073 3.927 10 H 0.068 0.932 11 C 0.110 3.890 12 N -0.611 5.611 13 C -0.256 4.256 14 H 0.047 0.953 15 C -0.011 4.011 16 N -0.940 5.940 17 Si 0.937 3.063 18 H -0.279 1.279 19 H -0.307 1.307 20 H -0.265 1.265 21 C 0.144 3.856 22 C -0.167 4.167 23 C 0.070 3.930 24 O -0.355 6.355 25 N -0.443 5.443 26 C -0.019 4.019 27 C -0.223 4.223 28 C -0.221 4.221 29 C -0.028 4.028 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.413 0.587 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.263 0.737 41 H 0.042 0.958 42 H 0.017 0.983 43 H 0.079 0.921 44 H 0.050 0.950 45 H 0.098 0.902 46 H 0.049 0.951 47 H 0.177 0.823 48 H 0.142 0.858 49 H 0.141 0.859 50 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.373 0.470 25.481 25.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.050 3.950 3 H 0.117 0.883 4 C -0.181 4.181 5 C 0.306 3.694 6 O -0.455 6.455 7 N -0.362 5.362 8 C 0.003 3.997 9 C 0.014 3.986 10 H 0.086 0.914 11 C -0.014 4.014 12 N -0.334 5.334 13 C -0.386 4.386 14 H 0.065 0.935 15 C -0.208 4.208 16 N -0.583 5.583 17 Si 0.767 3.233 18 H -0.207 1.207 19 H -0.236 1.236 20 H -0.189 1.189 21 C 0.017 3.983 22 C -0.208 4.208 23 C -0.008 4.008 24 O -0.273 6.273 25 N -0.119 5.119 26 C -0.149 4.149 27 C -0.248 4.248 28 C -0.246 4.246 29 C -0.157 4.157 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.249 0.751 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.035 0.965 43 H 0.098 0.902 44 H 0.069 0.931 45 H 0.116 0.884 46 H 0.067 0.933 47 H 0.194 0.806 48 H 0.160 0.840 49 H 0.159 0.841 50 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.891 1.482 25.156 25.498 hybrid contribution 0.414 -0.032 -1.337 1.400 sum 4.305 1.451 23.820 24.249 Atomic orbital electron populations 1.22210 0.92931 1.03218 1.03490 1.21030 0.95846 0.96406 0.81737 0.88304 1.21942 1.04693 1.01106 0.90390 1.20656 0.78567 0.85237 0.84989 1.90695 1.41653 1.26094 1.87047 1.45798 1.57151 1.28101 1.05105 1.21454 1.00038 0.95541 0.82707 1.21718 0.82497 1.00324 0.94102 0.91442 1.21216 0.99111 0.95117 0.85969 1.44203 1.01218 1.60355 1.27644 1.18588 1.10565 1.22815 0.86635 0.93491 1.26065 0.99301 0.98665 0.96817 1.69983 1.50481 1.32791 1.05018 0.85936 0.78046 0.82638 0.76722 1.20672 1.23552 1.18949 1.20720 0.83981 0.96839 0.96771 1.23459 0.99854 0.99825 0.97655 1.22443 0.99843 0.85983 0.92506 1.87609 1.21221 1.41715 1.76714 1.44407 1.39051 1.10424 1.18045 1.22106 1.06447 0.86483 0.99817 1.21168 1.05056 0.99871 0.98659 1.21157 1.07340 0.94285 1.01796 1.22204 1.01410 1.00552 0.91562 0.90161 0.91270 0.92304 0.86055 0.86876 0.75055 0.91479 0.89973 0.89989 0.93065 0.92743 0.93993 0.96471 0.90231 0.93082 0.88443 0.93298 0.80605 0.84045 0.84113 0.80989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 8.97 71.99 0.65 -1.87 16 2 C 0.15 2.27 2.67 44.99 0.12 2.39 16 3 H 0.10 1.64 7.88 -2.39 -0.02 1.62 16 4 C -0.14 -1.80 5.17 29.85 0.15 -1.64 16 5 C 0.52 9.96 7.55 87.65 0.66 10.62 16 6 O -0.57 -15.07 13.97 -3.05 -0.04 -15.11 16 7 N -0.71 -13.33 5.41 -463.05 -2.51 -15.83 16 8 C 0.13 2.98 5.24 86.38 0.45 3.44 16 9 C 0.07 2.03 2.13 28.71 0.06 2.10 16 10 H 0.07 1.94 6.77 -2.38 -0.02 1.93 16 11 C 0.11 3.82 5.58 83.78 0.47 4.29 16 12 N -0.61 -26.83 2.16 -705.99 -1.52 -28.35 16 13 C -0.26 -13.68 9.93 84.03 0.83 -12.84 16 14 H 0.05 2.74 8.06 -2.91 -0.02 2.72 16 15 C -0.01 -0.61 5.27 84.86 0.45 -0.16 16 16 N -0.94 -56.65 13.97 21.65 0.30 -56.35 16 17 Si 0.94 45.62 25.24 68.60 1.73 47.35 16 18 H -0.28 -13.17 6.74 99.48 0.67 -12.50 16 19 H -0.31 -15.13 7.11 99.48 0.71 -14.42 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 21 C 0.14 5.91 4.31 87.75 0.38 6.28 16 22 C -0.17 -5.61 6.75 32.15 0.22 -5.39 16 23 C 0.07 1.93 6.38 72.73 0.46 2.39 16 24 O -0.35 -9.92 9.44 -137.21 -1.30 -11.22 16 25 N -0.44 -6.99 2.62 -501.98 -1.31 -8.30 16 26 C -0.02 -0.29 10.45 83.21 0.87 0.58 16 27 C -0.22 -3.79 10.86 22.14 0.24 -3.55 16 28 C -0.22 -3.85 10.86 22.14 0.24 -3.61 16 29 C -0.03 -0.46 11.39 83.21 0.95 0.49 16 30 H 0.08 1.56 5.95 -2.39 -0.01 1.55 16 31 H 0.07 0.92 7.91 -2.39 -0.02 0.90 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.12 1.09 8.06 -2.39 -0.02 1.07 16 34 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.41 6.18 8.26 -92.71 -0.77 5.42 16 36 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.08 2.82 8.00 -2.39 -0.02 2.80 16 39 H 0.05 1.72 8.14 -2.38 -0.02 1.71 16 40 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 41 H 0.04 1.63 7.99 -2.39 -0.02 1.61 16 42 H 0.02 0.80 3.44 -2.39 -0.01 0.79 16 43 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.05 1.46 6.66 -2.39 -0.02 1.44 16 47 H 0.18 1.85 8.06 -2.91 -0.02 1.83 16 48 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 49 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 50 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -67.97 391.91 2.68 -65.30 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.13 Total: 19.01 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 7.20 Total: 3.52 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -5.04 Total: -108.84 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -1.34 Total: -26.33 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.73 Total: 47.35 kcal Total: -67.97 2.68 -65.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150613702.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.889 kcal (2) G-P(sol) polarization free energy of solvation -67.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds