Wall clock time and date at job start Tue Mar 31 2020 19:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47387 * 2 1 4 4 C 1.52995 * 109.46659 * 120.00450 * 2 1 3 5 5 C 1.50700 * 109.47210 * 294.99511 * 4 2 1 6 6 O 1.21275 * 119.99796 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99915 * 180.02562 * 5 4 2 8 8 C 1.46502 * 119.99984 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47109 * 179.97438 * 8 7 5 10 10 H 1.08998 * 109.40517 * 305.16530 * 9 8 7 11 11 C 1.54667 * 109.34792 * 185.54798 * 9 8 7 12 12 N 1.48180 * 110.48789 * 200.72207 * 11 9 8 13 13 C 1.36940 * 118.51112 * 138.65369 * 12 11 9 14 14 H 1.08002 * 120.00341 * 326.24239 * 13 12 11 15 15 C 1.38816 * 119.99982 * 146.23533 * 13 12 11 16 16 N 1.31618 * 119.99841 * 330.58461 * 15 13 12 17 17 Si 1.86796 * 119.99693 * 150.57240 * 15 13 12 18 18 H 1.48503 * 109.47355 * 270.00229 * 17 15 13 19 19 H 1.48491 * 109.47435 * 30.00779 * 17 15 13 20 20 H 1.48504 * 109.46969 * 150.00821 * 17 15 13 21 21 C 1.44455 * 122.97765 * 318.38391 * 12 11 9 22 22 C 1.54876 * 109.33025 * 89.20930 * 21 12 11 23 23 C 1.47692 * 109.67807 * 290.10472 * 22 21 12 24 24 O 1.40526 * 109.40343 * 65.00087 * 9 8 7 25 25 N 1.46506 * 109.46955 * 240.00155 * 2 1 3 26 26 C 1.36340 * 125.63604 * 299.69554 * 25 2 1 27 27 C 1.34847 * 108.21736 * 179.83219 * 26 25 2 28 28 C 1.40891 * 107.41680 * 0.42042 * 27 26 25 29 29 C 1.34847 * 107.41827 * 359.74174 * 28 27 26 30 30 H 1.09008 * 109.46778 * 59.99645 * 1 2 3 31 31 H 1.08988 * 109.47480 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47278 * 300.00260 * 1 2 3 33 33 H 1.09007 * 109.47013 * 174.99912 * 4 2 1 34 34 H 1.08999 * 109.47756 * 54.99937 * 4 2 1 35 35 H 0.97001 * 120.00441 * 359.97438 * 7 5 4 36 36 H 1.09001 * 109.46873 * 60.00101 * 8 7 5 37 37 H 1.08996 * 109.47011 * 299.99746 * 8 7 5 38 38 H 1.09004 * 109.43223 * 80.41500 * 11 9 8 39 39 H 1.09001 * 109.24095 * 320.91727 * 11 9 8 40 40 H 0.97002 * 120.00486 * 356.99979 * 16 15 13 41 41 H 1.08998 * 109.49967 * 209.16758 * 21 12 11 42 42 H 1.09009 * 109.49090 * 329.25358 * 21 12 11 43 43 H 1.08989 * 109.43286 * 50.16575 * 22 21 12 44 44 H 1.08999 * 109.43541 * 170.04026 * 22 21 12 45 45 H 1.08997 * 108.64000 * 181.88309 * 23 22 21 46 46 H 1.09001 * 108.64643 * 299.71875 * 23 22 21 47 47 H 1.08000 * 125.89060 * 359.96519 * 26 25 2 48 48 H 1.08006 * 126.29116 * 180.16931 * 27 26 25 49 49 H 1.08004 * 126.29126 * 179.73444 * 28 27 26 50 50 H 1.08000 * 125.89396 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6413 0.0569 2.4766 6 8 1.0110 1.0868 2.3633 7 7 1.9852 -0.3916 3.7000 8 6 1.5972 0.3647 4.8933 9 6 2.1073 -0.3567 6.1425 10 1 1.7461 -1.3851 6.1397 11 6 1.5783 0.3661 7.4034 12 7 2.4143 0.0335 8.5809 13 6 2.7332 1.0342 9.4597 14 1 2.8868 2.0407 9.0995 15 6 2.8590 0.7548 10.8136 16 7 2.1594 -0.2215 11.3519 17 14 4.0215 1.7643 11.8714 18 1 5.3659 1.1336 11.8700 19 1 4.1200 3.1409 11.3235 20 1 3.5027 1.8208 13.2617 21 6 2.9032 -1.2995 8.8467 22 6 4.2730 -1.4915 8.1499 23 6 4.0835 -1.5426 6.6861 24 8 3.5125 -0.3554 6.1413 25 7 2.0184 -0.6906 -1.1963 26 6 1.7656 -1.9902 -1.5221 27 6 2.3799 -2.2586 -2.6921 28 6 3.0440 -1.0845 -3.0988 29 6 2.8055 -0.1416 -2.1647 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 3.1263 -0.7996 1.2056 34 1 1.6053 -1.7199 1.2951 35 1 2.4890 -1.2156 3.7907 36 1 0.5109 0.4421 4.9370 37 1 2.0312 1.3634 4.8474 38 1 0.5505 0.0573 7.5941 39 1 1.6040 1.4431 7.2374 40 1 1.5238 -0.7174 10.8124 41 1 3.0196 -1.4367 9.9218 42 1 2.1931 -2.0310 8.4610 43 1 4.9281 -0.6578 8.4020 44 1 4.7254 -2.4232 8.4898 45 1 5.0519 -1.7115 6.2151 46 1 3.4321 -2.3835 6.4481 47 1 1.1735 -2.6842 -0.9440 48 1 2.3686 -3.2016 -3.2184 49 1 3.6356 -0.9621 -3.9941 50 1 3.1740 0.8734 -2.1811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150613705.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:34 Heat of formation + Delta-G solvation = -6.649609 kcal Electronic energy + Delta-G solvation = -29177.377355 eV Core-core repulsion = 25206.468367 eV Total energy + Delta-G solvation = -3970.908988 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.51677 -40.04499 -38.97105 -35.77340 -35.32693 -34.74229 -32.50132 -31.47560 -30.27163 -29.17839 -28.91545 -27.91523 -25.77403 -25.11190 -23.22634 -22.43598 -21.24815 -20.81701 -20.50278 -19.83586 -19.55290 -17.92249 -17.44673 -16.88917 -16.52559 -16.29371 -15.74333 -15.24261 -14.98187 -14.84160 -14.36037 -14.09126 -13.94320 -13.76184 -13.70568 -13.30904 -13.18357 -13.11646 -12.85710 -12.55740 -12.49272 -12.47038 -12.29500 -12.10540 -11.90506 -11.71198 -11.48273 -11.42958 -10.79821 -10.64724 -10.52694 -10.30126 -10.13852 -10.09869 -10.04759 -9.39785 -9.20585 -9.14034 -8.84332 -8.37038 -8.33138 -6.85388 -6.12324 -3.35860 2.05773 2.38774 2.51956 2.86064 3.14430 3.49239 3.49415 3.67040 4.02795 4.10747 4.37354 4.51160 4.52872 4.75607 4.83184 4.92749 5.00768 5.02089 5.11375 5.18391 5.27102 5.30981 5.35630 5.39425 5.43265 5.49368 5.53019 5.58640 5.68539 5.74837 5.87048 5.93972 5.95362 6.07975 6.12115 6.15178 6.28405 6.36524 6.41284 6.57470 6.60451 6.78822 6.99818 7.03686 7.16642 7.21300 7.28345 7.71859 7.98797 8.07380 8.54197 9.09278 9.79598 10.16561 11.09753 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027383 B = 0.002026 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.287099 B =13818.936867 C =14143.288498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.149 3.851 3 H 0.107 0.893 4 C -0.153 4.153 5 C 0.517 3.483 6 O -0.540 6.540 7 N -0.718 5.718 8 C 0.123 3.877 9 C 0.067 3.933 10 H 0.053 0.947 11 C 0.130 3.870 12 N -0.585 5.585 13 C -0.351 4.351 14 H 0.052 0.948 15 C -0.023 4.023 16 N -0.904 5.904 17 Si 1.065 2.935 18 H -0.292 1.292 19 H -0.291 1.291 20 H -0.290 1.290 21 C 0.141 3.859 22 C -0.178 4.178 23 C 0.079 3.921 24 O -0.358 6.358 25 N -0.443 5.443 26 C -0.015 4.015 27 C -0.204 4.204 28 C -0.205 4.205 29 C -0.014 4.014 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.401 0.599 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.024 0.976 39 H 0.060 0.940 40 H 0.268 0.732 41 H 0.086 0.914 42 H 0.020 0.980 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.033 0.967 47 H 0.157 0.843 48 H 0.132 0.868 49 H 0.133 0.867 50 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.110 -5.777 -23.169 23.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.047 3.953 3 H 0.125 0.875 4 C -0.193 4.193 5 C 0.303 3.697 6 O -0.418 6.418 7 N -0.369 5.369 8 C -0.001 4.001 9 C 0.007 3.993 10 H 0.071 0.929 11 C 0.004 3.996 12 N -0.307 5.307 13 C -0.481 4.481 14 H 0.070 0.930 15 C -0.225 4.225 16 N -0.543 5.543 17 Si 0.895 3.105 18 H -0.220 1.220 19 H -0.218 1.218 20 H -0.216 1.216 21 C 0.013 3.987 22 C -0.218 4.218 23 C 0.003 3.997 24 O -0.276 6.276 25 N -0.118 5.118 26 C -0.145 4.145 27 C -0.229 4.229 28 C -0.230 4.230 29 C -0.144 4.144 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.235 0.765 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.042 0.958 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.038 0.962 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.052 0.948 47 H 0.174 0.826 48 H 0.150 0.850 49 H 0.150 0.850 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.002 -4.504 -21.463 21.931 hybrid contribution -0.350 -0.893 -1.410 1.705 sum -0.348 -5.397 -22.873 23.504 Atomic orbital electron populations 1.22289 0.92739 1.02822 1.04530 1.21097 0.96071 0.96678 0.81471 0.87507 1.22012 1.03977 1.00824 0.92512 1.20222 0.79466 0.85641 0.84406 1.90700 1.40101 1.24431 1.86567 1.45941 1.57259 1.27874 1.05815 1.21602 0.99951 0.96271 0.82253 1.22833 0.83011 0.98854 0.94645 0.92858 1.21903 0.92732 0.98648 0.86351 1.43620 1.56884 1.06155 1.24086 1.19952 1.47442 0.91425 0.89242 0.93030 1.25861 1.00564 1.01452 0.94637 1.70787 1.21676 1.24528 1.37341 0.83500 0.76164 0.75163 0.75661 1.21982 1.21754 1.21647 1.20942 0.90423 0.85546 1.01757 1.22153 1.02636 1.01362 0.95681 1.21390 0.97228 0.85753 0.95368 1.87427 1.18250 1.40832 1.81127 1.44371 1.39243 1.10112 1.18123 1.21728 1.06889 0.86195 0.99685 1.20886 1.04779 0.99346 0.97868 1.20886 1.06858 0.93997 1.01224 1.21875 1.01110 0.99835 0.91599 0.91917 0.92352 0.88569 0.88026 0.88179 0.76469 0.90148 0.90306 0.95832 0.92152 0.92114 0.89614 0.96199 0.90811 0.92322 0.91339 0.94836 0.82599 0.84988 0.84951 0.82374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 8.98 37.16 0.33 -1.09 16 2 C 0.15 1.27 2.67 -67.93 -0.18 1.09 16 3 H 0.11 0.98 7.88 -51.93 -0.41 0.57 16 4 C -0.15 -1.20 5.16 -27.89 -0.14 -1.34 16 5 C 0.52 5.68 7.55 -10.99 -0.08 5.60 16 6 O -0.54 -7.65 13.96 5.56 0.08 -7.57 16 7 N -0.72 -7.90 5.50 -60.29 -0.33 -8.23 16 8 C 0.12 1.67 5.24 -4.04 -0.02 1.65 16 9 C 0.07 1.06 2.35 -25.85 -0.06 1.00 16 10 H 0.05 0.78 7.21 -51.93 -0.37 0.41 16 11 C 0.13 2.62 6.15 -2.24 -0.01 2.60 16 12 N -0.59 -14.07 2.35 -171.25 -0.40 -14.47 16 13 C -0.35 -9.60 9.21 -15.06 -0.14 -9.74 16 14 H 0.05 1.46 7.96 -52.49 -0.42 1.05 16 15 C -0.02 -0.62 4.69 -17.43 -0.08 -0.71 16 16 N -0.90 -26.24 12.20 55.49 0.68 -25.56 16 17 Si 1.07 25.04 30.01 -169.99 -5.10 19.94 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 C 0.14 3.12 4.83 -4.14 -0.02 3.10 16 22 C -0.18 -3.35 6.04 -28.31 -0.17 -3.52 16 23 C 0.08 1.24 6.04 34.59 0.21 1.45 16 24 O -0.36 -6.21 9.78 -34.10 -0.33 -6.54 16 25 N -0.44 -3.95 2.62 -110.02 -0.29 -4.24 16 26 C -0.02 -0.13 10.45 -16.75 -0.18 -0.31 16 27 C -0.20 -1.89 10.86 -39.78 -0.43 -2.32 16 28 C -0.21 -1.92 10.86 -39.78 -0.43 -2.35 16 29 C -0.01 -0.13 11.39 -16.75 -0.19 -0.32 16 30 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 31 H 0.06 0.44 7.92 -51.94 -0.41 0.03 16 32 H 0.10 0.98 5.95 -51.93 -0.31 0.67 16 33 H 0.10 0.75 8.14 -51.92 -0.42 0.32 16 34 H 0.10 0.62 8.05 -51.93 -0.42 0.20 16 35 H 0.40 3.67 8.47 -40.82 -0.35 3.32 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 1.25 7.74 -51.93 -0.40 0.85 16 40 H 0.27 7.82 7.19 -40.82 -0.29 7.53 16 41 H 0.09 2.19 5.14 -51.93 -0.27 1.93 16 42 H 0.02 0.41 8.10 -51.92 -0.42 -0.01 16 43 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.03 0.46 7.28 -51.93 -0.38 0.08 16 47 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 48 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 49 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 50 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 396.44 15.07 5.97 5.97 Total: -1.00 -31.95 396.44 -9.64 -41.60 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -8.31 Total: 4.31 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -1.60 Total: -5.21 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.34 Total: -52.50 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.26 Total: -14.11 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.10 Total: 19.94 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.95 -9.64 -41.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150613705.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.946 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds