Wall clock time and date at job start Tue Mar 31 2020 19:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47387 * 2 1 4 4 C 1.52995 * 109.46659 * 120.00450 * 2 1 3 5 5 C 1.50700 * 109.47210 * 294.99511 * 4 2 1 6 6 O 1.21275 * 119.99796 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99915 * 180.02562 * 5 4 2 8 8 C 1.46502 * 119.99984 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47109 * 179.97438 * 8 7 5 10 10 H 1.08998 * 109.40517 * 305.16530 * 9 8 7 11 11 C 1.54667 * 109.34792 * 185.54798 * 9 8 7 12 12 N 1.48180 * 110.48789 * 200.72207 * 11 9 8 13 13 C 1.36940 * 118.51112 * 138.65369 * 12 11 9 14 14 H 1.08002 * 120.00341 * 326.24239 * 13 12 11 15 15 C 1.38816 * 119.99982 * 146.23533 * 13 12 11 16 16 N 1.31618 * 119.99841 * 330.58461 * 15 13 12 17 17 Si 1.86796 * 119.99693 * 150.57240 * 15 13 12 18 18 H 1.48503 * 109.47355 * 270.00229 * 17 15 13 19 19 H 1.48491 * 109.47435 * 30.00779 * 17 15 13 20 20 H 1.48504 * 109.46969 * 150.00821 * 17 15 13 21 21 C 1.44455 * 122.97765 * 318.38391 * 12 11 9 22 22 C 1.54876 * 109.33025 * 89.20930 * 21 12 11 23 23 C 1.47692 * 109.67807 * 290.10472 * 22 21 12 24 24 O 1.40526 * 109.40343 * 65.00087 * 9 8 7 25 25 N 1.46506 * 109.46955 * 240.00155 * 2 1 3 26 26 C 1.36340 * 125.63604 * 299.69554 * 25 2 1 27 27 C 1.34847 * 108.21736 * 179.83219 * 26 25 2 28 28 C 1.40891 * 107.41680 * 0.42042 * 27 26 25 29 29 C 1.34847 * 107.41827 * 359.74174 * 28 27 26 30 30 H 1.09008 * 109.46778 * 59.99645 * 1 2 3 31 31 H 1.08988 * 109.47480 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47278 * 300.00260 * 1 2 3 33 33 H 1.09007 * 109.47013 * 174.99912 * 4 2 1 34 34 H 1.08999 * 109.47756 * 54.99937 * 4 2 1 35 35 H 0.97001 * 120.00441 * 359.97438 * 7 5 4 36 36 H 1.09001 * 109.46873 * 60.00101 * 8 7 5 37 37 H 1.08996 * 109.47011 * 299.99746 * 8 7 5 38 38 H 1.09004 * 109.43223 * 80.41500 * 11 9 8 39 39 H 1.09001 * 109.24095 * 320.91727 * 11 9 8 40 40 H 0.97002 * 120.00486 * 356.99979 * 16 15 13 41 41 H 1.08998 * 109.49967 * 209.16758 * 21 12 11 42 42 H 1.09009 * 109.49090 * 329.25358 * 21 12 11 43 43 H 1.08989 * 109.43286 * 50.16575 * 22 21 12 44 44 H 1.08999 * 109.43541 * 170.04026 * 22 21 12 45 45 H 1.08997 * 108.64000 * 181.88309 * 23 22 21 46 46 H 1.09001 * 108.64643 * 299.71875 * 23 22 21 47 47 H 1.08000 * 125.89060 * 359.96519 * 26 25 2 48 48 H 1.08006 * 126.29116 * 180.16931 * 27 26 25 49 49 H 1.08004 * 126.29126 * 179.73444 * 28 27 26 50 50 H 1.08000 * 125.89396 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6413 0.0569 2.4766 6 8 1.0110 1.0868 2.3633 7 7 1.9852 -0.3916 3.7000 8 6 1.5972 0.3647 4.8933 9 6 2.1073 -0.3567 6.1425 10 1 1.7461 -1.3851 6.1397 11 6 1.5783 0.3661 7.4034 12 7 2.4143 0.0335 8.5809 13 6 2.7332 1.0342 9.4597 14 1 2.8868 2.0407 9.0995 15 6 2.8590 0.7548 10.8136 16 7 2.1594 -0.2215 11.3519 17 14 4.0215 1.7643 11.8714 18 1 5.3659 1.1336 11.8700 19 1 4.1200 3.1409 11.3235 20 1 3.5027 1.8208 13.2617 21 6 2.9032 -1.2995 8.8467 22 6 4.2730 -1.4915 8.1499 23 6 4.0835 -1.5426 6.6861 24 8 3.5125 -0.3554 6.1413 25 7 2.0184 -0.6906 -1.1963 26 6 1.7656 -1.9902 -1.5221 27 6 2.3799 -2.2586 -2.6921 28 6 3.0440 -1.0845 -3.0988 29 6 2.8055 -0.1416 -2.1647 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 3.1263 -0.7996 1.2056 34 1 1.6053 -1.7199 1.2951 35 1 2.4890 -1.2156 3.7907 36 1 0.5109 0.4421 4.9370 37 1 2.0312 1.3634 4.8474 38 1 0.5505 0.0573 7.5941 39 1 1.6040 1.4431 7.2374 40 1 1.5238 -0.7174 10.8124 41 1 3.0196 -1.4367 9.9218 42 1 2.1931 -2.0310 8.4610 43 1 4.9281 -0.6578 8.4020 44 1 4.7254 -2.4232 8.4898 45 1 5.0519 -1.7115 6.2151 46 1 3.4321 -2.3835 6.4481 47 1 1.1735 -2.6842 -0.9440 48 1 2.3686 -3.2016 -3.2184 49 1 3.6356 -0.9621 -3.9941 50 1 3.1740 0.8734 -2.1811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150613705.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:33 Heat of formation + Delta-G solvation = -25.738638 kcal Electronic energy + Delta-G solvation = -29178.205118 eV Core-core repulsion = 25206.468367 eV Total energy + Delta-G solvation = -3971.736751 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.17546 -41.04260 -40.26184 -37.32041 -36.35908 -35.71908 -33.83021 -33.39051 -31.12609 -30.24465 -29.59022 -28.90361 -27.34201 -26.69645 -24.44385 -23.51117 -22.52649 -21.78450 -21.44872 -21.14509 -20.28729 -19.36938 -18.63521 -18.01040 -17.69624 -17.28552 -16.64544 -16.54063 -16.23473 -15.80477 -15.64007 -15.57237 -15.18052 -15.02358 -14.69965 -14.55800 -14.35839 -14.00394 -13.96168 -13.91711 -13.55065 -13.39018 -13.16337 -13.11619 -12.92769 -12.77302 -12.64102 -12.38491 -12.33194 -12.16237 -12.11567 -11.95416 -11.86051 -11.49469 -11.33372 -11.03173 -10.69975 -10.23235 -10.17197 -9.50657 -9.02083 -8.86742 -8.22430 -5.47996 1.40171 1.54139 1.56134 1.61572 1.77849 1.80509 2.19589 2.32198 2.61855 2.79495 3.15556 3.43707 3.44956 3.68454 3.80352 3.92900 4.00196 4.06568 4.11320 4.16199 4.22064 4.32835 4.42483 4.43252 4.50233 4.52344 4.54301 4.60441 4.68553 4.70273 4.76544 4.78853 4.85881 4.94421 4.94826 4.97781 5.09784 5.17232 5.33946 5.35602 5.44609 5.47289 5.48483 5.90156 6.14056 6.38062 6.38328 6.43638 6.45703 6.53583 7.11626 7.15185 7.80292 8.13415 8.92300 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027383 B = 0.002026 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.287099 B =13818.936867 C =14143.288498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.152 3.848 3 H 0.096 0.904 4 C -0.139 4.139 5 C 0.518 3.482 6 O -0.575 6.575 7 N -0.710 5.710 8 C 0.135 3.865 9 C 0.084 3.916 10 H 0.076 0.924 11 C 0.123 3.877 12 N -0.602 5.602 13 C -0.356 4.356 14 H 0.032 0.968 15 C -0.068 4.068 16 N -0.925 5.925 17 Si 1.109 2.891 18 H -0.282 1.282 19 H -0.280 1.280 20 H -0.291 1.291 21 C 0.138 3.862 22 C -0.168 4.168 23 C 0.074 3.926 24 O -0.374 6.374 25 N -0.443 5.443 26 C -0.018 4.018 27 C -0.223 4.223 28 C -0.221 4.221 29 C -0.029 4.029 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.126 0.874 35 H 0.414 0.586 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.025 0.975 39 H 0.042 0.958 40 H 0.255 0.745 41 H 0.049 0.951 42 H 0.037 0.963 43 H 0.039 0.961 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.064 0.936 47 H 0.179 0.821 48 H 0.143 0.857 49 H 0.141 0.859 50 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.657 -7.485 -24.848 25.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 H 0.114 0.886 4 C -0.180 4.180 5 C 0.305 3.695 6 O -0.455 6.455 7 N -0.362 5.362 8 C 0.010 3.990 9 C 0.023 3.977 10 H 0.094 0.906 11 C -0.003 4.003 12 N -0.325 5.325 13 C -0.486 4.486 14 H 0.050 0.950 15 C -0.266 4.266 16 N -0.566 5.566 17 Si 0.934 3.066 18 H -0.209 1.209 19 H -0.205 1.205 20 H -0.218 1.218 21 C 0.012 3.988 22 C -0.208 4.208 23 C -0.002 4.002 24 O -0.292 6.292 25 N -0.119 5.119 26 C -0.148 4.148 27 C -0.247 4.247 28 C -0.245 4.245 29 C -0.159 4.159 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.131 0.869 34 H 0.144 0.856 35 H 0.251 0.749 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.042 0.958 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.102 0.898 45 H 0.116 0.884 46 H 0.082 0.918 47 H 0.196 0.804 48 H 0.161 0.839 49 H 0.159 0.841 50 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.784 -6.243 -23.181 24.019 hybrid contribution -0.626 -0.357 -0.934 1.180 sum 0.158 -6.599 -24.115 25.002 Atomic orbital electron populations 1.22203 0.92835 1.03316 1.03442 1.21023 0.95922 0.96356 0.81793 0.88553 1.21944 1.04720 1.01173 0.90134 1.20722 0.78515 0.85243 0.84984 1.90701 1.41653 1.26123 1.87024 1.45780 1.57334 1.28057 1.04987 1.21262 0.99871 0.95224 0.82597 1.22594 0.82562 0.99445 0.93065 0.90577 1.22044 0.92630 0.98388 0.87241 1.43812 1.57850 1.06148 1.24675 1.20027 1.46991 0.91600 0.90011 0.95005 1.27010 1.01417 1.02107 0.96031 1.70894 1.22674 1.25754 1.37237 0.82911 0.74830 0.74639 0.74188 1.20890 1.20522 1.21783 1.20936 0.92793 0.85040 1.00080 1.22046 0.99625 1.01206 0.97918 1.21519 0.99442 0.86112 0.93083 1.87436 1.18773 1.42140 1.80844 1.44395 1.39201 1.10275 1.18057 1.22123 1.06633 0.86273 0.99728 1.21173 1.05190 0.99866 0.98488 1.21159 1.07235 0.94361 1.01759 1.22195 1.01364 1.00571 0.91757 0.92335 0.91036 0.90270 0.86866 0.85639 0.74930 0.89758 0.92517 0.95758 0.93927 0.93463 0.93300 0.94495 0.94215 0.89799 0.88444 0.91763 0.80409 0.83948 0.84133 0.81160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 8.98 71.98 0.65 -1.85 16 2 C 0.15 2.29 2.67 44.99 0.12 2.41 16 3 H 0.10 1.67 7.88 -2.39 -0.02 1.65 16 4 C -0.14 -1.76 5.16 29.85 0.15 -1.61 16 5 C 0.52 10.27 7.55 87.66 0.66 10.94 16 6 O -0.57 -15.80 13.96 -3.01 -0.04 -15.84 16 7 N -0.71 -13.73 5.50 -463.06 -2.54 -16.27 16 8 C 0.14 3.50 5.24 86.38 0.45 3.95 16 9 C 0.08 2.48 2.35 31.16 0.07 2.55 16 10 H 0.08 1.95 7.21 -2.39 -0.02 1.93 16 11 C 0.12 4.95 6.15 86.62 0.53 5.48 16 12 N -0.60 -29.26 2.35 -695.70 -1.63 -30.90 16 13 C -0.36 -19.96 9.21 84.03 0.77 -19.19 16 14 H 0.03 1.88 7.96 -2.91 -0.02 1.85 16 15 C -0.07 -3.82 4.69 84.86 0.40 -3.42 16 16 N -0.92 -54.91 12.20 21.65 0.26 -54.65 16 17 Si 1.11 51.25 30.01 68.60 2.06 53.31 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 21 C 0.14 6.09 4.83 87.40 0.42 6.51 16 22 C -0.17 -6.03 6.04 29.57 0.18 -5.85 16 23 C 0.07 2.08 6.04 70.32 0.42 2.50 16 24 O -0.37 -12.09 9.78 -144.92 -1.42 -13.51 16 25 N -0.44 -6.98 2.62 -502.00 -1.31 -8.30 16 26 C -0.02 -0.27 10.45 83.21 0.87 0.60 16 27 C -0.22 -3.71 10.86 22.14 0.24 -3.46 16 28 C -0.22 -3.84 10.86 22.14 0.24 -3.60 16 29 C -0.03 -0.49 11.39 83.21 0.95 0.46 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.07 0.91 7.92 -2.39 -0.02 0.89 16 32 H 0.08 1.55 5.95 -2.39 -0.01 1.54 16 33 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.13 1.00 8.05 -2.39 -0.02 0.99 16 35 H 0.41 5.94 8.47 -92.71 -0.78 5.16 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.04 1.82 7.74 -2.39 -0.02 1.81 16 40 H 0.26 15.38 7.19 -92.71 -0.67 14.71 16 41 H 0.05 2.55 5.14 -2.39 -0.01 2.53 16 42 H 0.04 1.46 8.10 -2.38 -0.02 1.44 16 43 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.06 1.44 7.28 -2.39 -0.02 1.43 16 47 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 48 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 49 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 50 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -71.43 396.44 2.75 -68.68 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.24 Total: 21.05 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 7.14 Total: -3.58 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -5.23 Total: -110.11 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -1.46 Total: -29.35 kcal Atomic # 14 Polarization: 51.25 SS G_CDS: 2.06 Total: 53.31 kcal Total: -71.43 2.75 -68.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150613705.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.943 kcal (2) G-P(sol) polarization free energy of solvation -71.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds