Wall clock time and date at job start Tue Mar 31 2020 19:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47096 * 2 1 4 4 C 1.50704 * 109.46814 * 239.99936 * 2 1 3 5 5 O 1.21277 * 119.99961 * 239.99756 * 4 2 1 6 6 N 1.34775 * 119.99678 * 60.00407 * 4 2 1 7 7 C 1.46509 * 119.99572 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.46691 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.46627 * 179.97438 * 8 7 6 10 10 C 1.29454 * 117.69128 * 94.98068 * 9 8 7 11 11 C 1.50321 * 123.65005 * 180.86004 * 10 9 8 12 12 N 1.47005 * 109.16941 * 349.01670 * 11 10 9 13 13 C 1.36932 * 121.37954 * 222.97386 * 12 11 10 14 14 H 1.08000 * 120.00039 * 155.96749 * 13 12 11 15 15 C 1.38816 * 119.99977 * 335.95821 * 13 12 11 16 16 N 1.31614 * 119.99947 * 344.53499 * 15 13 12 17 17 Si 1.86799 * 119.99889 * 164.52441 * 15 13 12 18 18 H 1.48501 * 109.46949 * 60.01003 * 17 15 13 19 19 H 1.48505 * 109.47014 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47657 * 300.00542 * 17 15 13 21 21 C 1.46920 * 117.16603 * 42.93236 * 12 11 10 22 22 C 1.49966 * 117.69504 * 274.99769 * 9 8 7 23 23 C 1.52998 * 109.47276 * 120.00187 * 2 1 3 24 24 H 1.08997 * 110.21893 * 61.92701 * 23 2 1 25 25 C 1.54476 * 110.24685 * 299.99802 * 23 2 1 26 26 C 1.54629 * 101.76862 * 215.58501 * 25 23 2 27 27 C 1.51279 * 104.19386 * 24.79663 * 26 25 23 28 28 O 1.21275 * 124.94223 * 163.71645 * 27 26 25 29 29 N 1.34421 * 110.11787 * 343.74684 * 27 26 25 30 30 H 1.09004 * 109.46817 * 300.00083 * 1 2 3 31 31 H 1.08996 * 109.47275 * 60.00055 * 1 2 3 32 32 H 1.08995 * 109.47096 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00730 * 359.97438 * 6 4 2 34 34 H 1.08995 * 109.47547 * 59.99407 * 7 6 4 35 35 H 1.09001 * 109.46784 * 299.98947 * 7 6 4 36 36 H 1.09000 * 109.47028 * 59.99702 * 8 7 6 37 37 H 1.08993 * 109.46668 * 299.99450 * 8 7 6 38 38 H 1.07998 * 118.18091 * 0.82825 * 10 9 8 39 39 H 1.09001 * 109.52522 * 108.92539 * 11 10 9 40 40 H 1.09007 * 109.51971 * 229.11115 * 11 10 9 41 41 H 0.96997 * 120.00461 * 179.97438 * 16 15 13 42 42 H 1.08994 * 109.56118 * 178.54116 * 21 12 11 43 43 H 1.09003 * 109.76833 * 57.88160 * 21 12 11 44 44 H 1.08999 * 109.31558 * 281.29314 * 22 9 8 45 45 H 1.09000 * 109.31769 * 40.91362 * 22 9 8 46 46 H 1.09003 * 110.96747 * 333.70653 * 25 23 2 47 47 H 1.09000 * 110.97165 * 97.42373 * 25 23 2 48 48 H 1.08996 * 110.48498 * 143.47381 * 26 25 23 49 49 H 1.08997 * 110.48633 * 266.11932 * 26 25 23 50 50 H 0.96994 * 124.35397 * 179.59094 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7295 -1.6965 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 2.1945 -0.9409 -3.6508 8 6 1.6841 -0.2198 -4.9000 9 6 2.1864 -0.9303 -6.1305 10 6 1.4077 -1.8071 -6.6789 11 6 1.7802 -2.6060 -7.8965 12 7 3.0067 -2.0476 -8.4837 13 6 3.1392 -1.8843 -9.8368 14 1 3.8296 -1.1513 -10.2272 15 6 2.3862 -2.6610 -10.7066 16 7 1.7827 -3.7448 -10.2667 17 14 2.2291 -2.1679 -12.5015 18 1 3.5763 -2.1345 -13.1253 19 1 1.3779 -3.1549 -13.2134 20 1 1.6079 -0.8222 -12.5927 21 6 4.0831 -1.6716 -7.5571 22 6 3.5531 -0.5720 -6.6330 23 6 2.0400 -0.7213 1.2492 24 1 1.7118 -1.7606 1.2444 25 6 1.5351 -0.0071 2.5225 26 6 2.7371 -0.1812 3.4795 27 6 3.9237 -0.3533 2.5571 28 8 5.0844 -0.2399 2.8899 29 7 3.5045 -0.6496 1.3147 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.1488 0.5386 -2.5436 34 1 1.8308 -1.9684 -3.6507 35 1 3.2845 -0.9413 -3.6510 36 1 2.0475 0.8078 -4.9003 37 1 0.5941 -0.2198 -4.8995 38 1 0.4367 -1.9743 -6.2368 39 1 1.9523 -3.6442 -7.6124 40 1 0.9718 -2.5563 -8.6261 41 1 1.2562 -4.2873 -10.8743 42 1 4.9373 -1.2988 -8.1221 43 1 4.3806 -2.5381 -6.9665 44 1 3.5001 0.3672 -7.1837 45 1 4.2296 -0.4556 -5.7863 46 1 1.3415 1.0477 2.3273 47 1 0.6461 -0.4979 2.9185 48 1 2.8620 0.7059 4.1003 49 1 2.6050 -1.0672 4.1005 50 1 4.0940 -0.7970 0.5587 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161265283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:10 Heat of formation + Delta-G solvation = -49.802031 kcal Electronic energy + Delta-G solvation = -28542.790088 eV Core-core repulsion = 24570.009870 eV Total energy + Delta-G solvation = -3972.780218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.11216 -39.70483 -38.00034 -37.02820 -35.51574 -34.00130 -33.27159 -31.64611 -31.36470 -29.87143 -28.75725 -27.18237 -25.70924 -24.56713 -23.08292 -22.54010 -21.70182 -21.00730 -20.76141 -20.25526 -17.85535 -17.63304 -17.42689 -16.65833 -16.29978 -15.82862 -15.70352 -15.16484 -15.02460 -14.46572 -14.32544 -14.04219 -13.95187 -13.89481 -13.64121 -13.48810 -13.35620 -13.27151 -12.74531 -12.64678 -12.56719 -12.26096 -12.04137 -11.97482 -11.75950 -11.59647 -11.48232 -11.44127 -11.04674 -10.91308 -10.73912 -10.35818 -10.30897 -10.14758 -10.00853 -9.82829 -9.56164 -9.40815 -9.25427 -8.66483 -7.95140 -6.73723 -5.79600 -3.18461 2.31244 2.34916 2.72709 3.04098 3.07159 3.38077 3.43487 3.44651 3.83576 3.94754 4.11225 4.34068 4.49031 4.56901 4.61217 4.62300 4.77267 5.04605 5.06694 5.13055 5.15643 5.18855 5.23306 5.31649 5.34256 5.38512 5.52085 5.53532 5.60238 5.62171 5.75628 5.95467 5.99300 6.11444 6.17872 6.24509 6.37772 6.53210 6.53931 6.77616 6.80439 6.89354 7.20216 7.22171 7.31319 7.38916 7.73889 7.86098 7.92557 8.00284 8.38788 9.19884 9.83097 10.41430 11.30829 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.030011 B = 0.001809 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.760528 B =15478.213591 C =15921.693793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 H 0.105 0.895 4 C 0.512 3.488 5 O -0.538 6.538 6 N -0.726 5.726 7 C 0.123 3.877 8 C -0.091 4.091 9 C -0.143 4.143 10 C -0.146 4.146 11 C 0.195 3.805 12 N -0.595 5.595 13 C -0.246 4.246 14 H 0.068 0.932 15 C -0.002 4.002 16 N -0.909 5.909 17 Si 0.905 3.095 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.143 3.857 22 C -0.092 4.092 23 C 0.150 3.850 24 H 0.091 0.909 25 C -0.129 4.129 26 C -0.157 4.157 27 C 0.515 3.485 28 O -0.539 6.539 29 N -0.718 5.718 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.399 0.601 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.038 0.962 40 H 0.091 0.909 41 H 0.254 0.746 42 H 0.056 0.944 43 H 0.023 0.977 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.086 0.914 47 H 0.094 0.906 48 H 0.102 0.898 49 H 0.105 0.895 50 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.185 10.546 25.321 28.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 H 0.123 0.877 4 C 0.298 3.702 5 O -0.415 6.415 6 N -0.377 5.377 7 C 0.000 4.000 8 C -0.129 4.129 9 C -0.144 4.144 10 C -0.165 4.165 11 C 0.071 3.929 12 N -0.318 5.318 13 C -0.376 4.376 14 H 0.086 0.914 15 C -0.200 4.200 16 N -0.555 5.555 17 Si 0.735 3.265 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.211 1.211 21 C 0.017 3.983 22 C -0.131 4.131 23 C 0.044 3.956 24 H 0.108 0.892 25 C -0.167 4.167 26 C -0.197 4.197 27 C 0.301 3.699 28 O -0.416 6.416 29 N -0.374 5.374 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.233 0.767 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.056 0.944 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.041 0.959 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.104 0.896 47 H 0.112 0.888 48 H 0.120 0.880 49 H 0.123 0.877 50 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -6.222 9.766 25.523 28.027 hybrid contribution -0.336 0.501 -1.451 1.572 sum -6.558 10.268 24.072 26.979 Atomic orbital electron populations 1.21775 0.91552 1.03514 1.03388 1.21753 0.98477 1.01315 0.92881 0.87746 1.20545 0.80375 0.84653 0.84672 1.90737 1.37842 1.26144 1.86728 1.46126 1.53533 1.32037 1.05987 1.21476 0.99709 0.96459 0.82351 1.20904 1.00290 0.99095 0.92598 1.20221 0.97570 1.00179 0.96445 1.23122 0.97628 0.96778 0.98986 1.19713 0.90292 0.92821 0.90121 1.44016 1.11326 1.74282 1.02135 1.19139 1.22945 1.14455 0.81032 0.91437 1.24993 1.01578 0.95404 0.97987 1.70004 1.36565 1.14103 1.34795 0.86319 0.77728 0.77628 0.84804 1.20919 1.21627 1.21125 1.20873 0.91515 0.94265 0.91676 1.20772 0.93311 1.00476 0.98515 1.21474 0.80400 1.00255 0.93458 0.89159 1.22740 0.98223 1.02028 0.93670 1.22363 0.93598 1.05267 0.98489 1.20900 0.89907 0.75309 0.83785 1.90763 1.20183 1.51906 1.78794 1.46385 1.08034 1.71057 1.11905 0.90736 0.91441 0.91448 0.76676 0.91190 0.91210 0.91502 0.91554 0.89099 0.94397 0.89145 0.93567 0.92572 0.95928 0.91935 0.92896 0.89576 0.88761 0.87980 0.87703 0.74343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.47 8.86 37.16 0.33 -0.14 16 2 C -0.12 -0.66 2.39 -91.77 -0.22 -0.88 16 3 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 4 C 0.51 4.83 6.94 -10.98 -0.08 4.76 16 5 O -0.54 -7.30 14.71 5.56 0.08 -7.22 16 6 N -0.73 -6.27 5.45 -60.29 -0.33 -6.60 16 7 C 0.12 1.44 5.66 -4.03 -0.02 1.42 16 8 C -0.09 -1.09 5.32 -27.88 -0.15 -1.24 16 9 C -0.14 -2.39 5.11 -100.99 -0.52 -2.90 16 10 C -0.15 -2.75 9.47 -35.78 -0.34 -3.09 16 11 C 0.20 4.67 5.22 -5.10 -0.03 4.64 16 12 N -0.59 -15.00 3.00 -174.02 -0.52 -15.52 16 13 C -0.25 -6.77 9.70 -15.06 -0.15 -6.92 16 14 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 15 C 0.00 -0.05 5.01 -17.43 -0.09 -0.14 16 16 N -0.91 -26.28 11.08 55.49 0.61 -25.67 16 17 Si 0.91 21.68 29.58 -169.99 -5.03 16.65 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.14 3.03 6.55 -3.76 -0.02 3.00 16 22 C -0.09 -1.59 5.96 -28.19 -0.17 -1.76 16 23 C 0.15 0.93 2.55 -67.01 -0.17 0.76 16 24 H 0.09 0.63 8.07 -51.93 -0.42 0.21 16 25 C -0.13 -0.43 5.54 -25.10 -0.14 -0.57 16 26 C -0.16 -0.86 6.86 -26.74 -0.18 -1.05 16 27 C 0.52 5.33 8.43 -10.86 -0.09 5.24 16 28 O -0.54 -8.12 18.03 5.56 0.10 -8.02 16 29 N -0.72 -6.68 5.57 -52.77 -0.29 -6.97 16 30 H 0.07 0.11 7.16 -51.93 -0.37 -0.26 16 31 H 0.07 0.18 7.56 -51.93 -0.39 -0.21 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.40 2.30 7.89 -40.82 -0.32 1.98 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 36 H 0.07 0.73 8.11 -51.93 -0.42 0.30 16 37 H 0.07 0.73 7.78 -51.93 -0.40 0.32 16 38 H 0.09 1.50 7.73 -52.49 -0.41 1.10 16 39 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.09 2.39 6.41 -51.92 -0.33 2.06 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.06 1.15 7.95 -51.93 -0.41 0.74 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 46 H 0.09 0.19 7.78 -51.93 -0.40 -0.21 16 47 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 48 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 50 H 0.42 4.58 7.66 -40.82 -0.31 4.27 16 LS Contribution 398.05 15.07 6.00 6.00 Total: -1.00 -34.80 398.05 -9.80 -44.60 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -8.39 Total: 1.61 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -2.03 Total: 1.14 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.53 Total: -54.76 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: 0.18 Total: -15.24 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.80 -9.80 -44.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161265283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.206 kcal (2) G-P(sol) polarization free energy of solvation -34.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds