Wall clock time and date at job start Tue Mar 31 2020 19:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47096 * 2 1 4 4 C 1.50704 * 109.46814 * 239.99936 * 2 1 3 5 5 O 1.21277 * 119.99961 * 239.99756 * 4 2 1 6 6 N 1.34775 * 119.99678 * 60.00407 * 4 2 1 7 7 C 1.46509 * 119.99572 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.46691 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.46627 * 179.97438 * 8 7 6 10 10 C 1.29454 * 117.69128 * 94.98068 * 9 8 7 11 11 C 1.50321 * 123.65005 * 180.86004 * 10 9 8 12 12 N 1.47005 * 109.16941 * 349.01670 * 11 10 9 13 13 C 1.36932 * 121.37954 * 222.97386 * 12 11 10 14 14 H 1.08000 * 120.00039 * 155.96749 * 13 12 11 15 15 C 1.38816 * 119.99977 * 335.95821 * 13 12 11 16 16 N 1.31614 * 119.99947 * 344.53499 * 15 13 12 17 17 Si 1.86799 * 119.99889 * 164.52441 * 15 13 12 18 18 H 1.48501 * 109.46949 * 60.01003 * 17 15 13 19 19 H 1.48505 * 109.47014 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47657 * 300.00542 * 17 15 13 21 21 C 1.46920 * 117.16603 * 42.93236 * 12 11 10 22 22 C 1.49966 * 117.69504 * 274.99769 * 9 8 7 23 23 C 1.52998 * 109.47276 * 120.00187 * 2 1 3 24 24 H 1.08997 * 110.21893 * 61.92701 * 23 2 1 25 25 C 1.54476 * 110.24685 * 299.99802 * 23 2 1 26 26 C 1.54629 * 101.76862 * 215.58501 * 25 23 2 27 27 C 1.51279 * 104.19386 * 24.79663 * 26 25 23 28 28 O 1.21275 * 124.94223 * 163.71645 * 27 26 25 29 29 N 1.34421 * 110.11787 * 343.74684 * 27 26 25 30 30 H 1.09004 * 109.46817 * 300.00083 * 1 2 3 31 31 H 1.08996 * 109.47275 * 60.00055 * 1 2 3 32 32 H 1.08995 * 109.47096 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00730 * 359.97438 * 6 4 2 34 34 H 1.08995 * 109.47547 * 59.99407 * 7 6 4 35 35 H 1.09001 * 109.46784 * 299.98947 * 7 6 4 36 36 H 1.09000 * 109.47028 * 59.99702 * 8 7 6 37 37 H 1.08993 * 109.46668 * 299.99450 * 8 7 6 38 38 H 1.07998 * 118.18091 * 0.82825 * 10 9 8 39 39 H 1.09001 * 109.52522 * 108.92539 * 11 10 9 40 40 H 1.09007 * 109.51971 * 229.11115 * 11 10 9 41 41 H 0.96997 * 120.00461 * 179.97438 * 16 15 13 42 42 H 1.08994 * 109.56118 * 178.54116 * 21 12 11 43 43 H 1.09003 * 109.76833 * 57.88160 * 21 12 11 44 44 H 1.08999 * 109.31558 * 281.29314 * 22 9 8 45 45 H 1.09000 * 109.31769 * 40.91362 * 22 9 8 46 46 H 1.09003 * 110.96747 * 333.70653 * 25 23 2 47 47 H 1.09000 * 110.97165 * 97.42373 * 25 23 2 48 48 H 1.08996 * 110.48498 * 143.47381 * 26 25 23 49 49 H 1.08997 * 110.48633 * 266.11932 * 26 25 23 50 50 H 0.96994 * 124.35397 * 179.59094 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7295 -1.6965 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 2.1945 -0.9409 -3.6508 8 6 1.6841 -0.2198 -4.9000 9 6 2.1864 -0.9303 -6.1305 10 6 1.4077 -1.8071 -6.6789 11 6 1.7802 -2.6060 -7.8965 12 7 3.0067 -2.0476 -8.4837 13 6 3.1392 -1.8843 -9.8368 14 1 3.8296 -1.1513 -10.2272 15 6 2.3862 -2.6610 -10.7066 16 7 1.7827 -3.7448 -10.2667 17 14 2.2291 -2.1679 -12.5015 18 1 3.5763 -2.1345 -13.1253 19 1 1.3779 -3.1549 -13.2134 20 1 1.6079 -0.8222 -12.5927 21 6 4.0831 -1.6716 -7.5571 22 6 3.5531 -0.5720 -6.6330 23 6 2.0400 -0.7213 1.2492 24 1 1.7118 -1.7606 1.2444 25 6 1.5351 -0.0071 2.5225 26 6 2.7371 -0.1812 3.4795 27 6 3.9237 -0.3533 2.5571 28 8 5.0844 -0.2399 2.8899 29 7 3.5045 -0.6496 1.3147 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.1488 0.5386 -2.5436 34 1 1.8308 -1.9684 -3.6507 35 1 3.2845 -0.9413 -3.6510 36 1 2.0475 0.8078 -4.9003 37 1 0.5941 -0.2198 -4.8995 38 1 0.4367 -1.9743 -6.2368 39 1 1.9523 -3.6442 -7.6124 40 1 0.9718 -2.5563 -8.6261 41 1 1.2562 -4.2873 -10.8743 42 1 4.9373 -1.2988 -8.1221 43 1 4.3806 -2.5381 -6.9665 44 1 3.5001 0.3672 -7.1837 45 1 4.2296 -0.4556 -5.7863 46 1 1.3415 1.0477 2.3273 47 1 0.6461 -0.4979 2.9185 48 1 2.8620 0.7059 4.1003 49 1 2.6050 -1.0672 4.1005 50 1 4.0940 -0.7970 0.5587 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161265283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:09 Heat of formation + Delta-G solvation = -75.035807 kcal Electronic energy + Delta-G solvation = -28543.884306 eV Core-core repulsion = 24570.009870 eV Total energy + Delta-G solvation = -3973.874436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.75403 -40.50432 -39.50578 -37.82056 -36.70360 -35.20441 -34.18321 -33.04880 -32.12690 -31.50201 -30.15180 -27.68760 -27.16788 -25.43772 -24.56240 -23.86423 -22.51268 -22.28243 -21.41151 -20.96275 -19.48305 -18.47020 -18.14643 -17.66348 -17.21694 -17.03214 -16.85881 -16.53183 -15.99478 -15.76496 -15.45541 -15.28404 -15.11196 -14.89130 -14.73358 -14.49543 -14.25308 -13.91777 -13.85893 -13.61909 -13.41741 -13.26724 -13.12804 -12.87421 -12.81481 -12.76800 -12.58822 -12.44471 -12.32696 -12.21598 -12.10058 -11.89657 -11.85107 -11.69625 -11.25178 -10.93775 -10.75416 -10.69205 -10.14237 -10.07546 -9.49699 -8.76941 -7.89546 -5.32030 1.40902 1.45775 1.48391 1.55264 1.56891 1.62830 2.21424 2.42847 2.49982 3.26907 3.37178 3.48114 3.65574 3.72633 3.85564 3.95618 4.08771 4.12970 4.18751 4.26829 4.29405 4.34211 4.39018 4.53030 4.57737 4.68045 4.74422 4.84133 4.88777 4.89916 4.95128 4.96738 5.04335 5.09272 5.11199 5.16534 5.21968 5.25513 5.38503 5.40240 5.44093 5.48906 5.59180 5.82632 5.86686 6.08898 6.27541 6.32340 6.56022 7.11654 7.20445 7.26663 7.81993 8.36641 9.18947 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.030011 B = 0.001809 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.760528 B =15478.213591 C =15921.693793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 H 0.124 0.876 4 C 0.505 3.495 5 O -0.586 6.586 6 N -0.713 5.713 7 C 0.132 3.868 8 C -0.078 4.078 9 C -0.121 4.121 10 C -0.174 4.174 11 C 0.205 3.795 12 N -0.614 5.614 13 C -0.260 4.260 14 H 0.071 0.929 15 C -0.057 4.057 16 N -0.941 5.941 17 Si 0.973 3.027 18 H -0.276 1.276 19 H -0.294 1.294 20 H -0.277 1.277 21 C 0.135 3.865 22 C -0.087 4.087 23 C 0.142 3.858 24 H 0.079 0.921 25 C -0.113 4.113 26 C -0.149 4.149 27 C 0.500 3.500 28 O -0.600 6.600 29 N -0.722 5.722 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.417 0.583 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.001 0.999 40 H 0.056 0.944 41 H 0.250 0.750 42 H 0.057 0.943 43 H 0.014 0.986 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.108 0.892 47 H 0.124 0.876 48 H 0.116 0.884 49 H 0.116 0.884 50 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.167 13.721 27.154 31.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 H 0.142 0.858 4 C 0.293 3.707 5 O -0.466 6.466 6 N -0.365 5.365 7 C 0.008 3.992 8 C -0.115 4.115 9 C -0.122 4.122 10 C -0.193 4.193 11 C 0.080 3.920 12 N -0.338 5.338 13 C -0.390 4.390 14 H 0.088 0.912 15 C -0.252 4.252 16 N -0.588 5.588 17 Si 0.800 3.200 18 H -0.201 1.201 19 H -0.220 1.220 20 H -0.203 1.203 21 C 0.010 3.990 22 C -0.126 4.126 23 C 0.037 3.963 24 H 0.097 0.903 25 C -0.151 4.151 26 C -0.189 4.189 27 C 0.289 3.711 28 O -0.482 6.482 29 N -0.374 5.374 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.255 0.745 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.133 0.867 39 H 0.019 0.981 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.033 0.967 44 H 0.087 0.913 45 H 0.102 0.898 46 H 0.127 0.873 47 H 0.142 0.858 48 H 0.134 0.866 49 H 0.134 0.866 50 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -8.256 12.991 27.369 31.400 hybrid contribution 0.386 -0.524 -2.016 2.119 sum -7.870 12.466 25.353 29.328 Atomic orbital electron populations 1.21833 0.89163 1.03555 1.05394 1.21761 1.00115 1.01273 0.89957 0.85798 1.21366 0.79388 0.84124 0.85823 1.90727 1.39979 1.28475 1.87413 1.45931 1.53407 1.32282 1.04901 1.21128 0.98712 0.95738 0.83613 1.20796 1.01474 0.99445 0.89792 1.20591 0.96390 0.98248 0.96996 1.22820 0.99838 0.98530 0.98141 1.19369 0.89015 0.92176 0.91432 1.44309 1.12811 1.74468 1.02222 1.19501 1.22777 1.14233 0.82475 0.91150 1.25816 1.01700 0.95466 1.02168 1.70189 1.37436 1.15205 1.35942 0.85260 0.77730 0.77227 0.79749 1.20130 1.21993 1.20279 1.21068 0.90944 0.95272 0.91737 1.20721 0.94301 0.98851 0.98728 1.21741 0.78501 1.00488 0.95612 0.90299 1.22830 0.97967 1.03351 0.90916 1.22413 0.91947 1.06430 0.98104 1.21843 0.90393 0.74157 0.84721 1.90716 1.22941 1.54694 1.79880 1.46640 1.09551 1.69929 1.11281 0.87880 0.90365 0.92406 0.74515 0.93402 0.92794 0.88978 0.89558 0.86707 0.98114 0.92612 0.94098 0.92435 0.96745 0.91272 0.89781 0.87337 0.85782 0.86588 0.86551 0.75964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.29 8.86 71.98 0.64 0.35 16 2 C -0.11 -0.84 2.39 -11.54 -0.03 -0.87 16 3 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 4 C 0.51 8.68 6.94 87.66 0.61 9.29 16 5 O -0.59 -15.95 14.71 -3.02 -0.04 -15.99 16 6 N -0.71 -10.35 5.45 -463.04 -2.52 -12.88 16 7 C 0.13 2.84 5.66 86.38 0.49 3.32 16 8 C -0.08 -1.59 5.32 29.85 0.16 -1.43 16 9 C -0.12 -3.83 5.11 -15.14 -0.08 -3.91 16 10 C -0.17 -6.57 9.47 27.11 0.26 -6.31 16 11 C 0.21 10.29 5.22 85.42 0.45 10.74 16 12 N -0.61 -31.90 3.00 -704.46 -2.12 -34.01 16 13 C -0.26 -14.61 9.70 84.04 0.82 -13.80 16 14 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16 15 C -0.06 -3.23 5.01 84.86 0.43 -2.81 16 16 N -0.94 -56.72 11.08 21.65 0.24 -56.48 16 17 Si 0.97 45.36 29.58 68.60 2.03 47.39 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 C 0.14 5.76 6.55 86.33 0.57 6.32 16 22 C -0.09 -2.88 5.96 29.65 0.18 -2.70 16 23 C 0.14 1.45 2.55 45.44 0.12 1.56 16 24 H 0.08 1.00 8.07 -2.39 -0.02 0.98 16 25 C -0.11 -0.28 5.54 31.65 0.18 -0.11 16 26 C -0.15 -1.27 6.86 30.59 0.21 -1.06 16 27 C 0.50 10.30 8.43 87.90 0.74 11.04 16 28 O -0.60 -18.91 18.03 -3.01 -0.05 -18.96 16 29 N -0.72 -13.22 5.57 -439.45 -2.45 -15.67 16 30 H 0.10 -0.31 7.16 -2.38 -0.02 -0.33 16 31 H 0.08 0.04 7.56 -2.39 -0.02 0.02 16 32 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.42 3.04 7.89 -92.71 -0.73 2.31 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 1.34 8.09 -2.39 -0.02 1.32 16 36 H 0.09 1.53 8.11 -2.39 -0.02 1.51 16 37 H 0.09 1.52 7.78 -2.39 -0.02 1.50 16 38 H 0.12 3.72 7.73 -2.91 -0.02 3.69 16 39 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.06 3.12 6.41 -2.38 -0.02 3.11 16 41 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 42 H 0.06 2.37 7.95 -2.39 -0.02 2.35 16 43 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.08 2.29 8.08 -2.39 -0.02 2.27 16 46 H 0.11 -0.14 7.78 -2.39 -0.02 -0.16 16 47 H 0.12 -0.32 8.14 -2.39 -0.02 -0.34 16 48 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.40 9.23 7.66 -92.71 -0.71 8.52 16 Total: -1.00 -83.07 398.05 0.30 -82.76 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -0.50 Total: 14.21 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 5.72 Total: 9.62 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -6.85 Total: -119.03 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.10 Total: -34.95 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -83.07 0.30 -82.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161265283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.727 kcal (2) G-P(sol) polarization free energy of solvation -83.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds