Wall clock time and date at job start Tue Mar 31 2020 19:33:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 H 1.08996 * 109.46692 * 2 1
4 4 C 1.50694 * 109.47212 * 120.00319 * 2 1 3
5 5 O 1.21290 * 119.99916 * 119.99956 * 4 2 1
6 6 N 1.34778 * 120.00331 * 300.00286 * 4 2 1
7 7 C 1.46500 * 120.00043 * 180.27321 * 6 4 2
8 8 C 1.53003 * 109.46986 * 179.72058 * 7 6 4
9 9 C 1.50697 * 109.47177 * 180.02562 * 8 7 6
10 10 C 1.29450 * 117.69091 * 95.00269 * 9 8 7
11 11 C 1.50329 * 123.64948 * 180.85826 * 10 9 8
12 12 N 1.47003 * 109.16301 * 349.02357 * 11 10 9
13 13 C 1.36940 * 121.37225 * 222.92375 * 12 11 10
14 14 H 1.07998 * 119.99926 * 155.98977 * 13 12 11
15 15 C 1.38814 * 120.00031 * 335.99201 * 13 12 11
16 16 N 1.31617 * 119.99905 * 344.49804 * 15 13 12
17 17 Si 1.86800 * 119.99877 * 164.50347 * 15 13 12
18 18 H 1.48502 * 109.47467 * 94.45664 * 17 15 13
19 19 H 1.48500 * 109.46996 * 214.45550 * 17 15 13
20 20 H 1.48501 * 109.47015 * 334.45449 * 17 15 13
21 21 C 1.47330 * 117.25340 * 42.94815 * 12 11 10
22 22 C 1.49967 * 117.69288 * 274.74056 * 9 8 7
23 23 C 1.53006 * 109.46993 * 240.00472 * 2 1 3
24 24 H 1.08996 * 110.21221 * 186.92796 * 23 2 1
25 25 C 1.54482 * 110.24381 * 65.00043 * 23 2 1
26 26 C 1.54635 * 101.76073 * 215.58275 * 25 23 2
27 27 C 1.51283 * 104.19409 * 24.79764 * 26 25 23
28 28 O 1.21285 * 124.93682 * 163.71131 * 27 26 25
29 29 N 1.34414 * 110.11968 * 343.74804 * 27 26 25
30 30 H 1.08993 * 109.46830 * 299.99317 * 1 2 3
31 31 H 1.09000 * 109.47028 * 59.99409 * 1 2 3
32 32 H 1.08998 * 109.46643 * 179.97438 * 1 2 3
33 33 H 0.96998 * 119.99713 * 359.97438 * 6 4 2
34 34 H 1.08994 * 109.47483 * 299.72178 * 7 6 4
35 35 H 1.09002 * 109.47052 * 59.72677 * 7 6 4
36 36 H 1.09000 * 109.47226 * 300.00779 * 8 7 6
37 37 H 1.09007 * 109.46850 * 59.99966 * 8 7 6
38 38 H 1.07999 * 118.17885 * 0.83820 * 10 9 8
39 39 H 1.09001 * 109.52184 * 108.93000 * 11 10 9
40 40 H 1.08995 * 109.52239 * 229.11450 * 11 10 9
41 41 H 0.97001 * 120.00144 * 179.97438 * 16 15 13
42 42 H 1.08997 * 109.78175 * 57.80819 * 21 12 11
43 43 H 1.09002 * 109.78466 * 178.61484 * 21 12 11
44 44 H 1.08993 * 109.31713 * 281.28379 * 22 9 8
45 45 H 1.09001 * 109.31672 * 40.71957 * 22 9 8
46 46 H 1.08994 * 110.97035 * 333.69961 * 25 23 2
47 47 H 1.08998 * 110.96988 * 97.43258 * 25 23 2
48 48 H 1.08997 * 110.48510 * 143.47733 * 26 25 23
49 49 H 1.08994 * 110.48510 * 266.12234 * 26 25 23
50 50 H 0.96999 * 124.34844 * 179.59090 * 29 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 1.2304
5 8 2.7297 -1.6966 1.1190
6 7 1.7068 -0.2501 2.4546
7 6 2.2001 -0.9374 3.6506
8 6 1.6948 -0.2129 4.8999
9 6 2.2027 -0.9194 6.1303
10 6 3.2903 -0.4747 6.6734
11 6 3.9249 -1.0882 7.8903
12 7 2.9930 -2.0582 8.4834
13 6 2.8008 -2.1260 9.8375
14 1 1.8819 -2.5330 10.2328
15 6 3.7871 -1.6715 10.7022
16 7 5.0080 -1.4636 10.2567
17 14 3.3815 -1.3553 12.4980
18 1 3.7143 -2.5598 13.3003
19 1 4.1745 -0.1994 12.9884
20 1 1.9335 -1.0551 12.6330
21 6 2.2748 -2.9547 7.5609
22 6 1.4092 -2.0843 6.6426
23 6 2.0401 -0.7212 -1.2494
24 1 3.1229 -0.8363 -1.2021
25 6 1.6407 0.0625 -2.5194
26 6 1.3613 -1.0820 -3.5211
27 6 1.0070 -2.2634 -2.6451
28 8 0.4542 -3.2721 -3.0297
29 7 1.3932 -2.0322 -1.3786
30 1 -0.3633 0.5137 0.8900
31 1 -0.3633 0.5139 -0.8899
32 1 -0.3632 -1.0277 -0.0005
33 1 1.1494 0.5387 2.5436
34 1 1.8373 -1.9651 3.6549
35 1 3.2901 -0.9368 3.6464
36 1 2.0575 0.8149 4.8957
37 1 0.6047 -0.2134 4.9042
38 1 3.7687 0.3846 6.2273
39 1 4.8459 -1.5960 7.6040
40 1 4.1492 -0.3073 8.6169
41 1 5.6971 -1.1456 10.8608
42 1 2.9905 -3.5244 6.9682
43 1 1.6396 -3.6354 8.1277
44 1 0.5460 -1.7166 7.1971
45 1 1.0644 -2.6841 5.8003
46 1 0.7435 0.6563 -2.3453
47 1 2.4616 0.6914 -2.8639
48 1 0.5250 -0.8244 -4.1709
49 1 2.2517 -1.2982 -4.1113
50 1 1.2613 -2.6522 -0.6444
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001161265284.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:33:13
Heat of formation + Delta-G solvation = -46.787608 kcal
Electronic energy + Delta-G solvation = -28604.051863 eV
Core-core repulsion = 24631.402360 eV
Total energy + Delta-G solvation = -3972.649502 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-41.18620 -39.69169 -37.98045 -37.06263 -35.50354 -33.87452 -33.12188 -31.66076
-31.34048 -29.86403 -28.73683 -27.48061 -25.69918 -24.55970 -23.07487 -22.54157
-21.64969 -21.00866 -20.93593 -20.09162 -17.64521 -17.42496 -17.34628 -17.04665
-16.33225 -15.75623 -15.65580 -15.10904 -15.04471 -14.62438 -14.43814 -14.05612
-14.00707 -13.84940 -13.74007 -13.59105 -13.34124 -13.07616 -12.76257 -12.65877
-12.36907 -12.27736 -12.03759 -12.02477 -11.69983 -11.60060 -11.44387 -11.37625
-11.04827 -10.92648 -10.73244 -10.34508 -10.30554 -10.16147 -10.00630 -9.82312
-9.56560 -9.40081 -9.25163 -8.66724 -7.95218 -6.73482 -5.79708 -3.18314
2.31825 2.34657 2.73053 3.04298 3.07261 3.36771 3.43720 3.46010
3.85062 3.92756 4.14055 4.33532 4.48870 4.49791 4.59741 4.64639
4.82463 5.04764 5.08893 5.14889 5.16569 5.20642 5.22411 5.26665
5.38722 5.41741 5.51889 5.52813 5.60443 5.67709 5.75321 5.95538
5.99593 6.11518 6.17904 6.24998 6.36965 6.51474 6.53501 6.77223
6.78227 6.89179 7.20506 7.22507 7.31329 7.38781 7.74129 7.86188
7.93472 7.98840 8.38312 9.19795 9.82696 10.41282 11.30708
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.033391 B = 0.001778 C = 0.001757
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 838.359643 B =15744.474248 C =15928.718969
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.122 4.122
3 H 0.113 0.887
4 C 0.512 3.488
5 O -0.537 6.537
6 N -0.726 5.726
7 C 0.123 3.877
8 C -0.091 4.091
9 C -0.143 4.143
10 C -0.146 4.146
11 C 0.196 3.804
12 N -0.595 5.595
13 C -0.245 4.245
14 H 0.068 0.932
15 C -0.002 4.002
16 N -0.909 5.909
17 Si 0.904 3.096
18 H -0.288 1.288
19 H -0.290 1.290
20 H -0.280 1.280
21 C 0.143 3.857
22 C -0.091 4.091
23 C 0.150 3.850
24 H 0.092 0.908
25 C -0.132 4.132
26 C -0.156 4.156
27 C 0.516 3.484
28 O -0.540 6.540
29 N -0.715 5.715
30 H 0.064 0.936
31 H 0.071 0.929
32 H 0.064 0.936
33 H 0.399 0.601
34 H 0.069 0.931
35 H 0.070 0.930
36 H 0.066 0.934
37 H 0.066 0.934
38 H 0.091 0.909
39 H 0.038 0.962
40 H 0.091 0.909
41 H 0.253 0.747
42 H 0.024 0.976
43 H 0.056 0.944
44 H 0.062 0.938
45 H 0.052 0.948
46 H 0.088 0.912
47 H 0.093 0.907
48 H 0.101 0.899
49 H 0.104 0.896
50 H 0.414 0.586
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.135 9.621 -25.192 28.168
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.144 4.144
3 H 0.131 0.869
4 C 0.297 3.703
5 O -0.414 6.414
6 N -0.377 5.377
7 C 0.000 4.000
8 C -0.129 4.129
9 C -0.144 4.144
10 C -0.165 4.165
11 C 0.071 3.929
12 N -0.319 5.319
13 C -0.374 4.374
14 H 0.086 0.914
15 C -0.200 4.200
16 N -0.555 5.555
17 Si 0.734 3.266
18 H -0.215 1.215
19 H -0.216 1.216
20 H -0.205 1.205
21 C 0.016 3.984
22 C -0.130 4.130
23 C 0.043 3.957
24 H 0.110 0.890
25 C -0.170 4.170
26 C -0.196 4.196
27 C 0.302 3.698
28 O -0.417 6.417
29 N -0.371 5.371
30 H 0.083 0.917
31 H 0.090 0.910
32 H 0.083 0.917
33 H 0.233 0.767
34 H 0.088 0.912
35 H 0.088 0.912
36 H 0.084 0.916
37 H 0.085 0.915
38 H 0.109 0.891
39 H 0.056 0.944
40 H 0.109 0.891
41 H 0.064 0.936
42 H 0.042 0.958
43 H 0.074 0.926
44 H 0.081 0.919
45 H 0.070 0.930
46 H 0.106 0.894
47 H 0.112 0.888
48 H 0.120 0.880
49 H 0.123 0.877
50 H 0.254 0.746
Dipole moment (debyes) X Y Z Total
from point charges -7.756 8.492 -25.425 27.906
hybrid contribution -0.298 0.511 1.443 1.560
sum -8.054 9.004 -23.982 26.853
Atomic orbital electron populations
1.21810 0.92190 1.03385 1.02945 1.21707 0.98446 1.01388 0.92903
0.86886 1.20539 0.80252 0.84835 0.84666 1.90753 1.37710 1.26184
1.86751 1.46122 1.53428 1.32180 1.05981 1.21468 0.99578 0.96566
0.82363 1.20905 1.00695 0.98684 0.92602 1.20220 0.98184 0.99572
0.96440 1.23125 0.96011 0.98388 0.98990 1.19706 0.90486 0.92614
0.90078 1.44134 1.49113 1.36501 1.02128 1.19182 0.99036 1.38178
0.81037 0.91415 1.24994 0.94706 1.02356 0.97969 1.70019 1.00558
1.50200 1.34698 0.86247 0.77650 0.77642 0.85058 1.21495 1.21590
1.20514 1.20990 0.93910 0.91731 0.91758 1.20789 0.98376 0.95349
0.98475 1.21462 0.98166 0.82596 0.93434 0.89005 1.22789 1.03520
0.97286 0.93391 1.22348 1.04630 0.94063 0.98575 1.20878 0.77273
0.88089 0.83551 1.90767 1.42931 1.30798 1.77196 1.46302 1.59892
1.19958 1.10906 0.91668 0.91012 0.91714 0.76680 0.91228 0.91211
0.91565 0.91501 0.89099 0.94416 0.89142 0.93647 0.95817 0.92554
0.91921 0.92971 0.89367 0.88836 0.88020 0.87728 0.74569
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.65 8.65 37.16 0.32 -0.33 16
2 C -0.12 -0.65 2.58 -91.77 -0.24 -0.88 16
3 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16
4 C 0.51 4.77 6.98 -10.99 -0.08 4.69 16
5 O -0.54 -7.26 15.04 5.55 0.08 -7.18 16
6 N -0.73 -6.21 5.45 -60.29 -0.33 -6.54 16
7 C 0.12 1.44 5.66 -4.04 -0.02 1.41 16
8 C -0.09 -1.09 5.32 -27.88 -0.15 -1.24 16
9 C -0.14 -2.38 5.11 -100.99 -0.52 -2.90 16
10 C -0.15 -2.75 9.47 -35.78 -0.34 -3.08 16
11 C 0.20 4.68 5.23 -5.10 -0.03 4.65 16
12 N -0.60 -15.00 3.01 -173.56 -0.52 -15.53 16
13 C -0.24 -6.73 9.71 -15.06 -0.15 -6.88 16
14 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16
15 C 0.00 -0.07 5.01 -17.43 -0.09 -0.16 16
16 N -0.91 -26.28 11.08 55.49 0.61 -25.67 16
17 Si 0.90 21.66 29.58 -169.99 -5.03 16.63 16
18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
21 C 0.14 3.00 6.59 -3.44 -0.02 2.98 16
22 C -0.09 -1.57 5.95 -28.08 -0.17 -1.74 16
23 C 0.15 0.90 2.72 -67.01 -0.18 0.72 16
24 H 0.09 0.64 7.91 -51.93 -0.41 0.23 16
25 C -0.13 -0.43 6.54 -25.09 -0.16 -0.60 16
26 C -0.16 -0.83 6.86 -26.74 -0.18 -1.01 16
27 C 0.52 5.13 8.43 -10.86 -0.09 5.03 16
28 O -0.54 -7.90 18.03 5.55 0.10 -7.80 16
29 N -0.71 -6.26 4.54 -52.76 -0.24 -6.50 16
30 H 0.06 0.23 7.56 -51.93 -0.39 -0.16 16
31 H 0.07 0.22 6.37 -51.93 -0.33 -0.11 16
32 H 0.06 0.42 7.43 -51.93 -0.39 0.03 16
33 H 0.40 2.28 7.89 -40.82 -0.32 1.95 16
34 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16
35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
36 H 0.07 0.73 7.78 -51.93 -0.40 0.32 16
37 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16
38 H 0.09 1.50 7.73 -52.49 -0.41 1.10 16
39 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16
40 H 0.09 2.39 6.41 -51.93 -0.33 2.06 16
41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16
42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16
43 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16
44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
45 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16
46 H 0.09 0.19 6.12 -51.93 -0.32 -0.13 16
47 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16
48 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16
49 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16
50 H 0.41 4.28 8.12 -40.82 -0.33 3.94 16
LS Contribution 395.77 15.07 5.96 5.96
Total: -1.00 -34.72 395.77 -9.69 -44.41
By element:
Atomic # 1 Polarization: 9.78 SS G_CDS: -8.24 Total: 1.54 kcal
Atomic # 6 Polarization: 2.76 SS G_CDS: -2.09 Total: 0.67 kcal
Atomic # 7 Polarization: -53.76 SS G_CDS: -0.47 Total: -54.24 kcal
Atomic # 8 Polarization: -15.16 SS G_CDS: 0.18 Total: -14.98 kcal
Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal
Total LS contribution 5.96 Total: 5.96 kcal
Total: -34.72 -9.69 -44.41 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001161265284.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.378 kcal
(2) G-P(sol) polarization free energy of solvation -34.725 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.102 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.410 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.788 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds