Wall clock time and date at job start Tue Mar 31 2020 19:33:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 H 1.08996 * 109.46692 * 2 1
4 4 C 1.50694 * 109.47212 * 120.00319 * 2 1 3
5 5 O 1.21290 * 119.99916 * 119.99956 * 4 2 1
6 6 N 1.34778 * 120.00331 * 300.00286 * 4 2 1
7 7 C 1.46500 * 120.00043 * 180.27321 * 6 4 2
8 8 C 1.53003 * 109.46986 * 179.72058 * 7 6 4
9 9 C 1.50697 * 109.47177 * 180.02562 * 8 7 6
10 10 C 1.29450 * 117.69091 * 95.00269 * 9 8 7
11 11 C 1.50329 * 123.64948 * 180.85826 * 10 9 8
12 12 N 1.47003 * 109.16301 * 349.02357 * 11 10 9
13 13 C 1.36940 * 121.37225 * 222.92375 * 12 11 10
14 14 H 1.07998 * 119.99926 * 155.98977 * 13 12 11
15 15 C 1.38814 * 120.00031 * 335.99201 * 13 12 11
16 16 N 1.31617 * 119.99905 * 344.49804 * 15 13 12
17 17 Si 1.86800 * 119.99877 * 164.50347 * 15 13 12
18 18 H 1.48502 * 109.47467 * 94.45664 * 17 15 13
19 19 H 1.48500 * 109.46996 * 214.45550 * 17 15 13
20 20 H 1.48501 * 109.47015 * 334.45449 * 17 15 13
21 21 C 1.47330 * 117.25340 * 42.94815 * 12 11 10
22 22 C 1.49967 * 117.69288 * 274.74056 * 9 8 7
23 23 C 1.53006 * 109.46993 * 240.00472 * 2 1 3
24 24 H 1.08996 * 110.21221 * 186.92796 * 23 2 1
25 25 C 1.54482 * 110.24381 * 65.00043 * 23 2 1
26 26 C 1.54635 * 101.76073 * 215.58275 * 25 23 2
27 27 C 1.51283 * 104.19409 * 24.79764 * 26 25 23
28 28 O 1.21285 * 124.93682 * 163.71131 * 27 26 25
29 29 N 1.34414 * 110.11968 * 343.74804 * 27 26 25
30 30 H 1.08993 * 109.46830 * 299.99317 * 1 2 3
31 31 H 1.09000 * 109.47028 * 59.99409 * 1 2 3
32 32 H 1.08998 * 109.46643 * 179.97438 * 1 2 3
33 33 H 0.96998 * 119.99713 * 359.97438 * 6 4 2
34 34 H 1.08994 * 109.47483 * 299.72178 * 7 6 4
35 35 H 1.09002 * 109.47052 * 59.72677 * 7 6 4
36 36 H 1.09000 * 109.47226 * 300.00779 * 8 7 6
37 37 H 1.09007 * 109.46850 * 59.99966 * 8 7 6
38 38 H 1.07999 * 118.17885 * 0.83820 * 10 9 8
39 39 H 1.09001 * 109.52184 * 108.93000 * 11 10 9
40 40 H 1.08995 * 109.52239 * 229.11450 * 11 10 9
41 41 H 0.97001 * 120.00144 * 179.97438 * 16 15 13
42 42 H 1.08997 * 109.78175 * 57.80819 * 21 12 11
43 43 H 1.09002 * 109.78466 * 178.61484 * 21 12 11
44 44 H 1.08993 * 109.31713 * 281.28379 * 22 9 8
45 45 H 1.09001 * 109.31672 * 40.71957 * 22 9 8
46 46 H 1.08994 * 110.97035 * 333.69961 * 25 23 2
47 47 H 1.08998 * 110.96988 * 97.43258 * 25 23 2
48 48 H 1.08997 * 110.48510 * 143.47733 * 26 25 23
49 49 H 1.08994 * 110.48510 * 266.12234 * 26 25 23
50 50 H 0.96999 * 124.34844 * 179.59090 * 29 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 1.2304
5 8 2.7297 -1.6966 1.1190
6 7 1.7068 -0.2501 2.4546
7 6 2.2001 -0.9374 3.6506
8 6 1.6948 -0.2129 4.8999
9 6 2.2027 -0.9194 6.1303
10 6 3.2903 -0.4747 6.6734
11 6 3.9249 -1.0882 7.8903
12 7 2.9930 -2.0582 8.4834
13 6 2.8008 -2.1260 9.8375
14 1 1.8819 -2.5330 10.2328
15 6 3.7871 -1.6715 10.7022
16 7 5.0080 -1.4636 10.2567
17 14 3.3815 -1.3553 12.4980
18 1 3.7143 -2.5598 13.3003
19 1 4.1745 -0.1994 12.9884
20 1 1.9335 -1.0551 12.6330
21 6 2.2748 -2.9547 7.5609
22 6 1.4092 -2.0843 6.6426
23 6 2.0401 -0.7212 -1.2494
24 1 3.1229 -0.8363 -1.2021
25 6 1.6407 0.0625 -2.5194
26 6 1.3613 -1.0820 -3.5211
27 6 1.0070 -2.2634 -2.6451
28 8 0.4542 -3.2721 -3.0297
29 7 1.3932 -2.0322 -1.3786
30 1 -0.3633 0.5137 0.8900
31 1 -0.3633 0.5139 -0.8899
32 1 -0.3632 -1.0277 -0.0005
33 1 1.1494 0.5387 2.5436
34 1 1.8373 -1.9651 3.6549
35 1 3.2901 -0.9368 3.6464
36 1 2.0575 0.8149 4.8957
37 1 0.6047 -0.2134 4.9042
38 1 3.7687 0.3846 6.2273
39 1 4.8459 -1.5960 7.6040
40 1 4.1492 -0.3073 8.6169
41 1 5.6971 -1.1456 10.8608
42 1 2.9905 -3.5244 6.9682
43 1 1.6396 -3.6354 8.1277
44 1 0.5460 -1.7166 7.1971
45 1 1.0644 -2.6841 5.8003
46 1 0.7435 0.6563 -2.3453
47 1 2.4616 0.6914 -2.8639
48 1 0.5250 -0.8244 -4.1709
49 1 2.2517 -1.2982 -4.1113
50 1 1.2613 -2.6522 -0.6444
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001161265284.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:33:12
Heat of formation + Delta-G solvation = -71.616491 kcal
Electronic energy + Delta-G solvation = -28605.128524 eV
Core-core repulsion = 24631.402360 eV
Total energy + Delta-G solvation = -3973.726164 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-41.80399 -40.47987 -39.47606 -37.84322 -36.68992 -35.17338 -33.97157 -32.99209
-32.13552 -31.49090 -30.12503 -27.95515 -27.20662 -25.43858 -24.54981 -23.87028
-22.50410 -22.23907 -21.58061 -20.77983 -19.47097 -18.13150 -17.98730 -17.71805
-17.48764 -17.03846 -16.83866 -16.47721 -15.87940 -15.69237 -15.55102 -15.31377
-15.17498 -14.93898 -14.72209 -14.44867 -14.40752 -14.19604 -13.86073 -13.45063
-13.38482 -13.22679 -13.14287 -12.87005 -12.80352 -12.73602 -12.58946 -12.47837
-12.35749 -12.17991 -12.06739 -11.89284 -11.73979 -11.68469 -11.25040 -10.93058
-10.74559 -10.69703 -10.10038 -10.06928 -9.49287 -8.76517 -7.89471 -5.31669
1.41430 1.45818 1.46526 1.57064 1.59524 1.64563 2.22813 2.44918
2.49922 3.27265 3.39329 3.47547 3.65005 3.75757 3.85852 3.96170
4.06247 4.12246 4.14318 4.27781 4.30035 4.32780 4.47005 4.54083
4.57988 4.68623 4.77060 4.84168 4.85485 4.89153 4.90426 4.92869
4.97292 5.09930 5.16792 5.17206 5.20384 5.22457 5.39398 5.40035
5.44738 5.49202 5.59599 5.84006 5.87170 6.10016 6.28106 6.32325
6.57951 7.11858 7.22686 7.28392 7.81785 8.36629 9.19150
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.033391 B = 0.001778 C = 0.001757
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 838.359643 B =15744.474248 C =15928.718969
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.109 4.109
3 H 0.152 0.848
4 C 0.506 3.494
5 O -0.586 6.586
6 N -0.713 5.713
7 C 0.133 3.867
8 C -0.078 4.078
9 C -0.121 4.121
10 C -0.174 4.174
11 C 0.206 3.794
12 N -0.615 5.615
13 C -0.258 4.258
14 H 0.071 0.929
15 C -0.058 4.058
16 N -0.941 5.941
17 Si 0.972 3.028
18 H -0.287 1.287
19 H -0.291 1.291
20 H -0.268 1.268
21 C 0.134 3.866
22 C -0.087 4.087
23 C 0.141 3.859
24 H 0.080 0.920
25 C -0.116 4.116
26 C -0.149 4.149
27 C 0.503 3.497
28 O -0.601 6.601
29 N -0.716 5.716
30 H 0.080 0.920
31 H 0.093 0.907
32 H 0.038 0.962
33 H 0.417 0.583
34 H 0.053 0.947
35 H 0.048 0.952
36 H 0.086 0.914
37 H 0.092 0.908
38 H 0.115 0.885
39 H 0.001 0.999
40 H 0.055 0.945
41 H 0.250 0.750
42 H 0.016 0.984
43 H 0.058 0.942
44 H 0.069 0.931
45 H 0.083 0.917
46 H 0.109 0.891
47 H 0.122 0.878
48 H 0.115 0.885
49 H 0.115 0.885
50 H 0.401 0.599
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.289 12.596 -26.912 31.445
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.131 4.131
3 H 0.169 0.831
4 C 0.294 3.706
5 O -0.466 6.466
6 N -0.365 5.365
7 C 0.008 3.992
8 C -0.115 4.115
9 C -0.122 4.122
10 C -0.193 4.193
11 C 0.081 3.919
12 N -0.339 5.339
13 C -0.388 4.388
14 H 0.088 0.912
15 C -0.252 4.252
16 N -0.588 5.588
17 Si 0.799 3.201
18 H -0.214 1.214
19 H -0.218 1.218
20 H -0.193 1.193
21 C 0.009 3.991
22 C -0.125 4.125
23 C 0.036 3.964
24 H 0.098 0.902
25 C -0.153 4.153
26 C -0.189 4.189
27 C 0.291 3.709
28 O -0.483 6.483
29 N -0.368 5.368
30 H 0.099 0.901
31 H 0.112 0.888
32 H 0.057 0.943
33 H 0.255 0.745
34 H 0.071 0.929
35 H 0.066 0.934
36 H 0.104 0.896
37 H 0.110 0.890
38 H 0.133 0.867
39 H 0.019 0.981
40 H 0.074 0.926
41 H 0.059 0.941
42 H 0.034 0.966
43 H 0.076 0.924
44 H 0.087 0.913
45 H 0.102 0.898
46 H 0.127 0.873
47 H 0.140 0.860
48 H 0.133 0.867
49 H 0.133 0.867
50 H 0.239 0.761
Dipole moment (debyes) X Y Z Total
from point charges -9.938 11.529 -27.155 31.130
hybrid contribution 0.365 -0.529 1.974 2.076
sum -9.573 11.000 -25.181 29.098
Atomic orbital electron populations
1.21838 0.91169 1.02303 1.04847 1.21740 0.98975 1.02399 0.89950
0.83050 1.21342 0.79250 0.84260 0.85790 1.90743 1.39968 1.28465
1.87436 1.45925 1.53269 1.32460 1.04890 1.21116 0.98293 0.96124
0.83636 1.20797 1.02030 0.98883 0.89802 1.20591 0.96406 0.98219
0.96999 1.22820 0.97907 1.00460 0.98143 1.19362 0.89820 0.91364
0.91389 1.44430 1.49567 1.37725 1.02201 1.19539 0.99057 1.37709
0.82493 0.91159 1.25812 0.94582 1.02693 1.02128 1.70199 1.01417
1.51317 1.35886 0.85194 0.77778 0.77116 0.79967 1.21361 1.21775
1.19305 1.21186 0.93981 0.92107 0.91813 1.20737 0.97675 0.95413
0.98704 1.21716 0.97454 0.81747 0.95524 0.90160 1.22858 1.05484
0.96393 0.90574 1.22396 1.05499 0.92517 0.98459 1.21770 0.76196
0.88563 0.84374 1.90721 1.45785 1.33465 1.78281 1.46525 1.59147
1.20874 1.10299 0.90095 0.88846 0.94285 0.74499 0.92859 0.93397
0.89572 0.88972 0.86707 0.98138 0.92627 0.94124 0.96599 0.92386
0.91280 0.89843 0.87276 0.85998 0.86668 0.86677 0.76115
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.76 8.65 71.98 0.62 -0.14 16
2 C -0.11 -0.77 2.58 -11.54 -0.03 -0.80 16
3 H 0.15 0.01 8.14 -2.39 -0.02 -0.01 16
4 C 0.51 8.42 6.98 87.65 0.61 9.03 16
5 O -0.59 -15.76 15.04 -3.06 -0.05 -15.80 16
6 N -0.71 -10.05 5.45 -463.06 -2.52 -12.58 16
7 C 0.13 2.81 5.66 86.38 0.49 3.29 16
8 C -0.08 -1.57 5.32 29.85 0.16 -1.41 16
9 C -0.12 -3.81 5.11 -15.14 -0.08 -3.88 16
10 C -0.17 -6.54 9.47 27.11 0.26 -6.28 16
11 C 0.21 10.30 5.23 85.42 0.45 10.74 16
12 N -0.62 -31.87 3.01 -703.04 -2.11 -33.98 16
13 C -0.26 -14.48 9.71 84.03 0.82 -13.67 16
14 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16
15 C -0.06 -3.27 5.01 84.86 0.43 -2.85 16
16 N -0.94 -56.70 11.08 21.65 0.24 -56.46 16
17 Si 0.97 45.34 29.58 68.60 2.03 47.37 16
18 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16
19 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16
20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16
21 C 0.13 5.69 6.59 86.32 0.57 6.26 16
22 C -0.09 -2.84 5.95 29.72 0.18 -2.66 16
23 C 0.14 1.37 2.72 45.45 0.12 1.49 16
24 H 0.08 0.99 7.91 -2.39 -0.02 0.98 16
25 C -0.12 -0.27 6.54 31.66 0.21 -0.07 16
26 C -0.15 -1.23 6.86 30.59 0.21 -1.02 16
27 C 0.50 9.95 8.43 87.90 0.74 10.69 16
28 O -0.60 -18.46 18.03 -3.05 -0.05 -18.51 16
29 N -0.72 -12.40 4.54 -439.43 -1.99 -14.39 16
30 H 0.08 0.19 7.56 -2.39 -0.02 0.18 16
31 H 0.09 0.13 6.37 -2.39 -0.02 0.12 16
32 H 0.04 0.43 7.43 -2.39 -0.02 0.41 16
33 H 0.42 2.85 7.89 -92.71 -0.73 2.12 16
34 H 0.05 1.32 8.11 -2.39 -0.02 1.30 16
35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16
36 H 0.09 1.50 7.78 -2.39 -0.02 1.48 16
37 H 0.09 1.51 8.11 -2.38 -0.02 1.49 16
38 H 0.12 3.70 7.73 -2.91 -0.02 3.68 16
39 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16
40 H 0.06 3.11 6.41 -2.39 -0.02 3.09 16
41 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16
42 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16
43 H 0.06 2.38 7.96 -2.39 -0.02 2.36 16
44 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16
45 H 0.08 2.26 8.10 -2.39 -0.02 2.24 16
46 H 0.11 -0.14 6.12 -2.39 -0.01 -0.16 16
47 H 0.12 -0.29 8.14 -2.39 -0.02 -0.31 16
48 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16
49 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16
50 H 0.40 8.72 8.12 -92.71 -0.75 7.96 16
Total: -1.00 -82.96 395.77 0.75 -82.21
By element:
Atomic # 1 Polarization: 13.95 SS G_CDS: -0.53 Total: 13.42 kcal
Atomic # 6 Polarization: 2.98 SS G_CDS: 5.75 Total: 8.73 kcal
Atomic # 7 Polarization: -111.03 SS G_CDS: -6.39 Total: -117.42 kcal
Atomic # 8 Polarization: -34.21 SS G_CDS: -0.10 Total: -34.31 kcal
Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal
Total: -82.96 0.75 -82.21 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001161265284.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.590 kcal
(2) G-P(sol) polarization free energy of solvation -82.961 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.371 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.755 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.206 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.616 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds