Wall clock time and date at job start Tue Mar 31 2020 19:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47095 * 2 1 4 4 C 1.50694 * 109.47007 * 119.99924 * 2 1 3 5 5 O 1.21283 * 120.00084 * 120.00232 * 4 2 1 6 6 N 1.34781 * 120.00403 * 300.00108 * 4 2 1 7 7 C 1.46501 * 119.99966 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.46443 * 180.02562 * 7 6 4 9 9 C 1.50711 * 109.46856 * 179.97438 * 8 7 6 10 10 C 1.29453 * 117.69220 * 94.73663 * 9 8 7 11 11 C 1.50316 * 123.65463 * 180.58898 * 10 9 8 12 12 N 1.47005 * 109.20028 * 349.50101 * 11 10 9 13 13 C 1.36936 * 121.37498 * 222.72039 * 12 11 10 14 14 H 1.07997 * 120.00270 * 156.00434 * 13 12 11 15 15 C 1.38814 * 120.00198 * 335.99646 * 13 12 11 16 16 N 1.31618 * 119.99846 * 344.51238 * 15 13 12 17 17 Si 1.86802 * 120.00030 * 164.50935 * 15 13 12 18 18 H 1.48496 * 109.47298 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47067 * 120.00494 * 17 15 13 20 20 H 1.48497 * 109.47029 * 240.00161 * 17 15 13 21 21 C 1.47338 * 117.25144 * 42.74497 * 12 11 10 22 22 C 1.49967 * 117.69329 * 275.00214 * 9 8 7 23 23 C 1.52997 * 109.47281 * 240.00258 * 2 1 3 24 24 H 1.09005 * 110.21385 * 298.06505 * 23 2 1 25 25 C 1.54476 * 110.24655 * 59.99964 * 23 2 1 26 26 C 1.54626 * 101.76722 * 93.58525 * 25 23 2 27 27 C 1.51283 * 104.19599 * 24.79858 * 26 25 23 28 28 O 1.21272 * 124.94509 * 163.78561 * 27 26 25 29 29 N 1.34425 * 110.11358 * 343.74743 * 27 26 25 30 30 H 1.08995 * 109.47051 * 299.99641 * 1 2 3 31 31 H 1.09004 * 109.46927 * 60.00181 * 1 2 3 32 32 H 1.09001 * 109.46488 * 179.97438 * 1 2 3 33 33 H 0.96996 * 119.99482 * 0.02562 * 6 4 2 34 34 H 1.08994 * 109.47294 * 60.00557 * 7 6 4 35 35 H 1.08999 * 109.47365 * 299.99870 * 7 6 4 36 36 H 1.09001 * 109.47667 * 299.99739 * 8 7 6 37 37 H 1.08995 * 109.47476 * 60.00431 * 8 7 6 38 38 H 1.08002 * 118.17108 * 0.86499 * 10 9 8 39 39 H 1.09004 * 109.66972 * 229.48321 * 11 10 9 40 40 H 1.08993 * 109.38616 * 109.34732 * 11 10 9 41 41 H 0.97003 * 119.99960 * 179.97438 * 16 15 13 42 42 H 1.09001 * 109.78190 * 178.61789 * 21 12 11 43 43 H 1.08995 * 109.78064 * 57.80213 * 21 12 11 44 44 H 1.08996 * 109.31362 * 281.28767 * 22 9 8 45 45 H 1.08998 * 109.31634 * 40.90562 * 22 9 8 46 46 H 1.09002 * 110.96629 * 211.70421 * 25 23 2 47 47 H 1.09002 * 110.96894 * 335.42426 * 25 23 2 48 48 H 1.09000 * 110.48775 * 143.47293 * 26 25 23 49 49 H 1.08998 * 110.48234 * 266.11934 * 26 25 23 50 50 H 0.96999 * 124.35019 * 179.59190 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1946 -0.9410 3.6507 8 6 1.6841 -0.2200 4.8999 9 6 2.1855 -0.9311 6.1305 10 6 3.2740 -0.4927 6.6772 11 6 3.8992 -1.1077 7.8980 12 7 2.9634 -2.0784 8.4835 13 6 2.7647 -2.1504 9.8365 14 1 1.8435 -2.5578 10.2261 15 6 3.7474 -1.6999 10.7073 16 7 4.9705 -1.4915 10.2682 17 14 3.3337 -1.3891 12.5022 18 1 1.9008 -1.6976 12.7406 19 1 4.1764 -2.2584 13.3621 20 1 3.5952 0.0352 12.8310 21 6 2.2485 -2.9712 7.5547 22 6 1.3915 -2.1005 6.6318 23 6 2.0401 -0.7212 -1.2492 24 1 1.7119 -1.7606 -1.2444 25 6 1.5351 -0.0069 -2.5225 26 6 2.7106 0.9475 -2.8359 27 6 3.9088 0.2835 -2.1941 28 8 5.0658 0.5540 -2.4369 29 7 3.5045 -0.6495 -1.3148 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.1488 0.5385 2.5436 34 1 3.2846 -0.9413 3.6510 35 1 1.8309 -1.9685 3.6506 36 1 2.0475 0.8077 4.9004 37 1 0.5942 -0.2199 4.8996 38 1 3.7574 0.3653 6.2339 39 1 4.1210 -0.3294 8.6282 40 1 4.8213 -1.6155 7.6154 41 1 5.6571 -1.1763 10.8767 42 1 1.6098 -3.6529 8.1163 43 1 2.9663 -3.5398 6.9636 44 1 0.5235 -1.7375 7.1820 45 1 1.0569 -2.6989 5.7844 46 1 1.3829 -0.7182 -3.3343 47 1 0.6214 0.5519 -2.3198 48 1 2.8543 1.0348 -3.9129 49 1 2.5347 1.9276 -2.3927 50 1 4.1036 -1.2040 -0.7909 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161265285.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:17 Heat of formation + Delta-G solvation = -47.489488 kcal Electronic energy + Delta-G solvation = -28658.826007 eV Core-core repulsion = 24686.146069 eV Total energy + Delta-G solvation = -3972.679938 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.17602 -39.65479 -37.97599 -37.05287 -35.48761 -33.93296 -33.19435 -31.61431 -31.33013 -29.86695 -28.73868 -27.19556 -25.74806 -24.73004 -23.09672 -22.54394 -21.57382 -20.99198 -20.78101 -20.15474 -17.98272 -17.62767 -17.41895 -16.65353 -16.10800 -15.88925 -15.51422 -15.36352 -14.96319 -14.49935 -14.25082 -14.08214 -13.93354 -13.91573 -13.65807 -13.54780 -13.41623 -13.32081 -12.75737 -12.52993 -12.35532 -12.29075 -12.07626 -12.01770 -11.74871 -11.59516 -11.43877 -11.34697 -11.04006 -10.92485 -10.75089 -10.31991 -10.29193 -10.14430 -10.00652 -9.82137 -9.56316 -9.41608 -9.23281 -8.66868 -7.94447 -6.73347 -5.79209 -3.18096 2.30248 2.39042 2.74355 3.05510 3.08809 3.36926 3.44382 3.46569 3.89497 3.99819 4.04580 4.36473 4.48459 4.49083 4.61683 4.70291 4.81810 5.02066 5.05874 5.10741 5.15686 5.18340 5.24624 5.31984 5.38905 5.40037 5.49880 5.53273 5.60624 5.63027 5.76035 5.96698 6.00649 6.11975 6.17939 6.26461 6.37823 6.53997 6.54542 6.77365 6.82096 6.89117 7.21887 7.24346 7.32240 7.39361 7.74847 7.87031 7.95389 8.01547 8.38618 9.20109 9.82974 10.41577 11.31148 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026603 B = 0.001872 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.259941 B =14953.540020 C =15476.670391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 H 0.101 0.899 4 C 0.517 3.483 5 O -0.540 6.540 6 N -0.727 5.727 7 C 0.123 3.877 8 C -0.091 4.091 9 C -0.143 4.143 10 C -0.146 4.146 11 C 0.196 3.804 12 N -0.596 5.596 13 C -0.245 4.245 14 H 0.069 0.931 15 C -0.003 4.003 16 N -0.909 5.909 17 Si 0.904 3.096 18 H -0.278 1.278 19 H -0.291 1.291 20 H -0.289 1.289 21 C 0.143 3.857 22 C -0.091 4.091 23 C 0.150 3.850 24 H 0.097 0.903 25 C -0.132 4.132 26 C -0.158 4.158 27 C 0.514 3.486 28 O -0.538 6.538 29 N -0.717 5.717 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.399 0.601 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.038 0.962 41 H 0.253 0.747 42 H 0.056 0.944 43 H 0.023 0.977 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.087 0.913 47 H 0.097 0.903 48 H 0.102 0.898 49 H 0.103 0.897 50 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.126 6.060 -25.552 29.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 H 0.119 0.881 4 C 0.302 3.698 5 O -0.417 6.417 6 N -0.378 5.378 7 C 0.001 3.999 8 C -0.129 4.129 9 C -0.144 4.144 10 C -0.165 4.165 11 C 0.071 3.929 12 N -0.319 5.319 13 C -0.374 4.374 14 H 0.087 0.913 15 C -0.201 4.201 16 N -0.554 5.554 17 Si 0.734 3.266 18 H -0.203 1.203 19 H -0.218 1.218 20 H -0.216 1.216 21 C 0.016 3.984 22 C -0.130 4.130 23 C 0.044 3.956 24 H 0.115 0.885 25 C -0.170 4.170 26 C -0.198 4.198 27 C 0.299 3.701 28 O -0.415 6.415 29 N -0.372 5.372 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.233 0.767 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.106 0.894 47 H 0.115 0.885 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -11.928 5.586 -25.686 28.866 hybrid contribution -0.149 0.463 1.360 1.444 sum -12.076 6.049 -24.326 27.824 Atomic orbital electron populations 1.21855 0.91793 1.03475 1.03297 1.21835 0.98203 1.01439 0.93426 0.88077 1.20461 0.80182 0.84554 0.84564 1.90695 1.37844 1.26383 1.86773 1.46114 1.53603 1.32062 1.05998 1.21462 0.99622 0.96486 0.82371 1.20904 1.00675 0.98704 0.92597 1.20215 0.98177 0.99553 0.96490 1.23128 0.95941 0.98452 0.98990 1.19703 0.90496 0.92599 0.90086 1.44141 1.48968 1.36632 1.02143 1.19224 0.98998 1.38157 0.81023 0.91341 1.25005 0.94713 1.02358 0.97994 1.70029 1.00583 1.50265 1.34557 0.86181 0.77720 0.77631 0.85018 1.20327 1.21756 1.21618 1.20958 0.93999 0.91777 0.91667 1.20756 0.98437 0.95291 0.98476 1.21399 0.80439 1.00809 0.92996 0.88459 1.22790 0.98555 0.98811 0.96851 1.22366 0.93847 1.00299 1.03328 1.20963 0.90002 0.79655 0.79432 1.90767 1.20675 1.65406 1.64629 1.46373 1.07992 1.39666 1.43215 0.91479 0.90669 0.91448 0.76724 0.91289 0.91204 0.91593 0.91479 0.89102 0.89105 0.94450 0.93670 0.92529 0.95889 0.91935 0.92929 0.89394 0.88464 0.87959 0.87837 0.74100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.46 8.85 37.16 0.33 -0.13 16 2 C -0.13 -0.72 2.51 -91.77 -0.23 -0.95 16 3 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 4 C 0.52 5.04 7.02 -10.99 -0.08 4.96 16 5 O -0.54 -7.36 14.81 5.56 0.08 -7.28 16 6 N -0.73 -6.53 5.45 -60.30 -0.33 -6.86 16 7 C 0.12 1.48 5.66 -4.04 -0.02 1.45 16 8 C -0.09 -1.11 5.32 -27.88 -0.15 -1.26 16 9 C -0.14 -2.41 5.11 -100.99 -0.52 -2.93 16 10 C -0.15 -2.79 9.47 -35.78 -0.34 -3.13 16 11 C 0.20 4.73 5.23 -5.10 -0.03 4.70 16 12 N -0.60 -15.07 3.01 -173.68 -0.52 -15.59 16 13 C -0.24 -6.74 9.71 -15.06 -0.15 -6.88 16 14 H 0.07 1.84 7.88 -52.49 -0.41 1.43 16 15 C 0.00 -0.08 5.01 -17.43 -0.09 -0.17 16 16 N -0.91 -26.44 11.08 55.49 0.61 -25.83 16 17 Si 0.90 21.75 29.58 -169.99 -5.03 16.72 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 C 0.14 3.00 6.58 -3.53 -0.02 2.97 16 22 C -0.09 -1.56 5.94 -28.18 -0.17 -1.73 16 23 C 0.15 0.92 2.56 -67.01 -0.17 0.75 16 24 H 0.10 0.63 8.07 -51.93 -0.42 0.21 16 25 C -0.13 -0.44 6.52 -25.10 -0.16 -0.61 16 26 C -0.16 -0.85 6.86 -26.74 -0.18 -1.03 16 27 C 0.51 5.29 8.43 -10.86 -0.09 5.20 16 28 O -0.54 -8.14 18.03 5.56 0.10 -8.04 16 29 N -0.72 -6.63 5.40 -52.76 -0.29 -6.92 16 30 H 0.07 0.18 7.56 -51.93 -0.39 -0.21 16 31 H 0.07 0.09 6.11 -51.93 -0.32 -0.23 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.40 2.44 7.89 -40.82 -0.32 2.12 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 36 H 0.07 0.76 7.79 -51.93 -0.40 0.35 16 37 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 38 H 0.09 1.55 7.74 -52.49 -0.41 1.14 16 39 H 0.09 2.43 6.41 -51.93 -0.33 2.09 16 40 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 46 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.10 0.11 5.81 -51.93 -0.30 -0.19 16 48 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.42 4.60 8.01 -40.82 -0.33 4.27 16 LS Contribution 396.53 15.07 5.98 5.98 Total: -1.00 -34.97 396.53 -9.71 -44.68 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -8.25 Total: 1.92 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -2.07 Total: 1.22 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.52 Total: -55.20 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.18 Total: -15.32 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.97 -9.71 -44.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161265285.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.812 kcal (2) G-P(sol) polarization free energy of solvation -34.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds