Wall clock time and date at job start Tue Mar 31 2020 19:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47095 * 2 1 4 4 C 1.50694 * 109.47007 * 119.99924 * 2 1 3 5 5 O 1.21283 * 120.00084 * 120.00232 * 4 2 1 6 6 N 1.34781 * 120.00403 * 300.00108 * 4 2 1 7 7 C 1.46501 * 119.99966 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.46443 * 180.02562 * 7 6 4 9 9 C 1.50711 * 109.46856 * 179.97438 * 8 7 6 10 10 C 1.29453 * 117.69220 * 94.73663 * 9 8 7 11 11 C 1.50316 * 123.65463 * 180.58898 * 10 9 8 12 12 N 1.47005 * 109.20028 * 349.50101 * 11 10 9 13 13 C 1.36936 * 121.37498 * 222.72039 * 12 11 10 14 14 H 1.07997 * 120.00270 * 156.00434 * 13 12 11 15 15 C 1.38814 * 120.00198 * 335.99646 * 13 12 11 16 16 N 1.31618 * 119.99846 * 344.51238 * 15 13 12 17 17 Si 1.86802 * 120.00030 * 164.50935 * 15 13 12 18 18 H 1.48496 * 109.47298 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47067 * 120.00494 * 17 15 13 20 20 H 1.48497 * 109.47029 * 240.00161 * 17 15 13 21 21 C 1.47338 * 117.25144 * 42.74497 * 12 11 10 22 22 C 1.49967 * 117.69329 * 275.00214 * 9 8 7 23 23 C 1.52997 * 109.47281 * 240.00258 * 2 1 3 24 24 H 1.09005 * 110.21385 * 298.06505 * 23 2 1 25 25 C 1.54476 * 110.24655 * 59.99964 * 23 2 1 26 26 C 1.54626 * 101.76722 * 93.58525 * 25 23 2 27 27 C 1.51283 * 104.19599 * 24.79858 * 26 25 23 28 28 O 1.21272 * 124.94509 * 163.78561 * 27 26 25 29 29 N 1.34425 * 110.11358 * 343.74743 * 27 26 25 30 30 H 1.08995 * 109.47051 * 299.99641 * 1 2 3 31 31 H 1.09004 * 109.46927 * 60.00181 * 1 2 3 32 32 H 1.09001 * 109.46488 * 179.97438 * 1 2 3 33 33 H 0.96996 * 119.99482 * 0.02562 * 6 4 2 34 34 H 1.08994 * 109.47294 * 60.00557 * 7 6 4 35 35 H 1.08999 * 109.47365 * 299.99870 * 7 6 4 36 36 H 1.09001 * 109.47667 * 299.99739 * 8 7 6 37 37 H 1.08995 * 109.47476 * 60.00431 * 8 7 6 38 38 H 1.08002 * 118.17108 * 0.86499 * 10 9 8 39 39 H 1.09004 * 109.66972 * 229.48321 * 11 10 9 40 40 H 1.08993 * 109.38616 * 109.34732 * 11 10 9 41 41 H 0.97003 * 119.99960 * 179.97438 * 16 15 13 42 42 H 1.09001 * 109.78190 * 178.61789 * 21 12 11 43 43 H 1.08995 * 109.78064 * 57.80213 * 21 12 11 44 44 H 1.08996 * 109.31362 * 281.28767 * 22 9 8 45 45 H 1.08998 * 109.31634 * 40.90562 * 22 9 8 46 46 H 1.09002 * 110.96629 * 211.70421 * 25 23 2 47 47 H 1.09002 * 110.96894 * 335.42426 * 25 23 2 48 48 H 1.09000 * 110.48775 * 143.47293 * 26 25 23 49 49 H 1.08998 * 110.48234 * 266.11934 * 26 25 23 50 50 H 0.96999 * 124.35019 * 179.59190 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1946 -0.9410 3.6507 8 6 1.6841 -0.2200 4.8999 9 6 2.1855 -0.9311 6.1305 10 6 3.2740 -0.4927 6.6772 11 6 3.8992 -1.1077 7.8980 12 7 2.9634 -2.0784 8.4835 13 6 2.7647 -2.1504 9.8365 14 1 1.8435 -2.5578 10.2261 15 6 3.7474 -1.6999 10.7073 16 7 4.9705 -1.4915 10.2682 17 14 3.3337 -1.3891 12.5022 18 1 1.9008 -1.6976 12.7406 19 1 4.1764 -2.2584 13.3621 20 1 3.5952 0.0352 12.8310 21 6 2.2485 -2.9712 7.5547 22 6 1.3915 -2.1005 6.6318 23 6 2.0401 -0.7212 -1.2492 24 1 1.7119 -1.7606 -1.2444 25 6 1.5351 -0.0069 -2.5225 26 6 2.7106 0.9475 -2.8359 27 6 3.9088 0.2835 -2.1941 28 8 5.0658 0.5540 -2.4369 29 7 3.5045 -0.6495 -1.3148 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.1488 0.5385 2.5436 34 1 3.2846 -0.9413 3.6510 35 1 1.8309 -1.9685 3.6506 36 1 2.0475 0.8077 4.9004 37 1 0.5942 -0.2199 4.8996 38 1 3.7574 0.3653 6.2339 39 1 4.1210 -0.3294 8.6282 40 1 4.8213 -1.6155 7.6154 41 1 5.6571 -1.1763 10.8767 42 1 1.6098 -3.6529 8.1163 43 1 2.9663 -3.5398 6.9636 44 1 0.5235 -1.7375 7.1820 45 1 1.0569 -2.6989 5.7844 46 1 1.3829 -0.7182 -3.3343 47 1 0.6214 0.5519 -2.3198 48 1 2.8543 1.0348 -3.9129 49 1 2.5347 1.9276 -2.3927 50 1 4.1036 -1.2040 -0.7909 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161265285.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:16 Heat of formation + Delta-G solvation = -72.966208 kcal Electronic energy + Delta-G solvation = -28659.930761 eV Core-core repulsion = 24686.146069 eV Total energy + Delta-G solvation = -3973.784692 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.81326 -40.47125 -39.48639 -37.85251 -36.69442 -35.19299 -34.07926 -33.02488 -32.07210 -31.50562 -30.13867 -27.71578 -27.16504 -25.57156 -24.59511 -23.92383 -22.51869 -22.20543 -21.41086 -20.83582 -19.47792 -18.64350 -18.09297 -17.69973 -17.22268 -16.99116 -16.72777 -16.41471 -16.11612 -15.75466 -15.47533 -15.31963 -15.05323 -14.89853 -14.71977 -14.43600 -14.30806 -14.10151 -13.87955 -13.71414 -13.38910 -13.24659 -13.05130 -12.84654 -12.81442 -12.66790 -12.61664 -12.44855 -12.33212 -12.16988 -12.14048 -11.90325 -11.71804 -11.68590 -11.25201 -10.92983 -10.76160 -10.71374 -10.14162 -10.08427 -9.50658 -8.77579 -7.89926 -5.32460 1.39831 1.45250 1.45967 1.55928 1.57262 1.65658 2.22252 2.44571 2.49380 3.26812 3.39047 3.56664 3.64608 3.65487 3.88697 3.94801 4.09488 4.11536 4.14103 4.24412 4.29758 4.35457 4.46033 4.53480 4.57827 4.67797 4.75334 4.83620 4.85434 4.89876 4.93587 4.96575 5.02316 5.08522 5.15543 5.16429 5.21637 5.22772 5.39276 5.43179 5.47132 5.48169 5.59316 5.83807 5.86423 6.11175 6.26458 6.31621 6.56935 7.10943 7.20823 7.28029 7.81095 8.36067 9.18831 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026603 B = 0.001872 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.259941 B =14953.540020 C =15476.670391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.116 0.884 4 C 0.508 3.492 5 O -0.586 6.586 6 N -0.715 5.715 7 C 0.133 3.867 8 C -0.078 4.078 9 C -0.119 4.119 10 C -0.178 4.178 11 C 0.207 3.793 12 N -0.615 5.615 13 C -0.256 4.256 14 H 0.073 0.927 15 C -0.060 4.060 16 N -0.943 5.943 17 Si 0.972 3.028 18 H -0.264 1.264 19 H -0.293 1.293 20 H -0.290 1.290 21 C 0.134 3.866 22 C -0.086 4.086 23 C 0.142 3.858 24 H 0.091 0.909 25 C -0.116 4.116 26 C -0.149 4.149 27 C 0.499 3.501 28 O -0.601 6.601 29 N -0.722 5.722 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.417 0.583 34 H 0.041 0.959 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.055 0.945 40 H -0.001 1.001 41 H 0.249 0.751 42 H 0.060 0.940 43 H 0.015 0.985 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.133 0.867 48 H 0.112 0.888 49 H 0.124 0.876 50 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.490 7.605 -27.390 33.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 H 0.134 0.866 4 C 0.296 3.704 5 O -0.466 6.466 6 N -0.367 5.367 7 C 0.009 3.991 8 C -0.115 4.115 9 C -0.120 4.120 10 C -0.197 4.197 11 C 0.082 3.918 12 N -0.339 5.339 13 C -0.386 4.386 14 H 0.091 0.909 15 C -0.254 4.254 16 N -0.590 5.590 17 Si 0.800 3.200 18 H -0.188 1.188 19 H -0.220 1.220 20 H -0.217 1.217 21 C 0.009 3.991 22 C -0.125 4.125 23 C 0.036 3.964 24 H 0.109 0.891 25 C -0.153 4.153 26 C -0.189 4.189 27 C 0.288 3.712 28 O -0.483 6.483 29 N -0.374 5.374 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.079 0.921 33 H 0.254 0.746 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.128 0.872 39 H 0.073 0.927 40 H 0.017 0.983 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.033 0.967 44 H 0.089 0.911 45 H 0.105 0.895 46 H 0.117 0.883 47 H 0.151 0.849 48 H 0.131 0.869 49 H 0.142 0.858 50 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -16.393 7.142 -27.542 32.837 hybrid contribution 1.186 -0.159 1.912 2.256 sum -15.207 6.983 -25.629 30.608 Atomic orbital electron populations 1.21912 0.89054 1.03735 1.05356 1.21848 1.00163 1.01147 0.90586 0.86619 1.21321 0.79256 0.84104 0.85742 1.90687 1.39837 1.28643 1.87441 1.45932 1.53483 1.32351 1.04947 1.21113 0.98025 0.96345 0.83636 1.20801 1.02269 0.98651 0.89816 1.20610 0.96244 0.98226 0.96879 1.22806 0.98036 1.00550 0.98301 1.19330 0.89795 0.91363 0.91339 1.44440 1.49380 1.37830 1.02280 1.19590 0.99015 1.37540 0.82430 0.90921 1.25840 0.94600 1.02754 1.02218 1.70213 1.01510 1.51498 1.35760 0.85122 0.77994 0.77016 0.79832 1.18781 1.22047 1.21685 1.21171 0.94073 0.92168 0.91716 1.20715 0.97713 0.95201 0.98825 1.21692 0.78480 1.01276 0.94940 0.89062 1.22865 0.98736 0.98425 0.95322 1.22421 0.91820 1.01073 1.03546 1.21940 0.90560 0.79541 0.79201 1.90720 1.23528 1.67387 1.66618 1.46645 1.09546 1.38851 1.42356 0.90395 0.87705 0.92100 0.74590 0.94041 0.92264 0.90071 0.88497 0.87170 0.92714 0.98340 0.94182 0.92128 0.96693 0.91069 0.89467 0.88311 0.84940 0.86937 0.85792 0.75865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.20 8.85 71.98 0.64 0.44 16 2 C -0.12 -0.93 2.51 -11.54 -0.03 -0.96 16 3 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 4 C 0.51 9.01 7.02 87.65 0.62 9.63 16 5 O -0.59 -16.00 14.81 -3.04 -0.04 -16.04 16 6 N -0.71 -10.87 5.45 -463.06 -2.52 -13.39 16 7 C 0.13 2.92 5.66 86.38 0.49 3.41 16 8 C -0.08 -1.62 5.32 29.85 0.16 -1.47 16 9 C -0.12 -3.77 5.11 -15.13 -0.08 -3.85 16 10 C -0.18 -6.87 9.47 27.11 0.26 -6.62 16 11 C 0.21 10.53 5.23 85.42 0.45 10.98 16 12 N -0.62 -31.99 3.01 -703.40 -2.12 -34.11 16 13 C -0.26 -14.37 9.71 84.03 0.82 -13.55 16 14 H 0.07 3.92 7.88 -2.91 -0.02 3.90 16 15 C -0.06 -3.41 5.01 84.86 0.43 -2.99 16 16 N -0.94 -57.42 11.08 21.65 0.24 -57.18 16 17 Si 0.97 45.60 29.58 68.60 2.03 47.62 16 18 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 20 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 21 C 0.13 5.63 6.58 86.26 0.57 6.20 16 22 C -0.09 -2.77 5.94 29.66 0.18 -2.60 16 23 C 0.14 1.42 2.56 45.44 0.12 1.53 16 24 H 0.09 1.04 8.07 -2.38 -0.02 1.02 16 25 C -0.12 -0.30 6.52 31.65 0.21 -0.09 16 26 C -0.15 -1.17 6.86 30.59 0.21 -0.96 16 27 C 0.50 10.21 8.43 87.90 0.74 10.95 16 28 O -0.60 -19.08 18.03 -3.00 -0.05 -19.13 16 29 N -0.72 -13.34 5.40 -439.44 -2.37 -15.71 16 30 H 0.08 -0.01 7.56 -2.39 -0.02 -0.02 16 31 H 0.10 -0.43 6.11 -2.39 -0.01 -0.44 16 32 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.42 3.34 7.89 -92.71 -0.73 2.60 16 34 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.44 8.08 -2.39 -0.02 1.42 16 36 H 0.08 1.54 7.79 -2.39 -0.02 1.52 16 37 H 0.10 1.56 8.11 -2.39 -0.02 1.54 16 38 H 0.11 3.76 7.74 -2.91 -0.02 3.74 16 39 H 0.05 3.12 6.41 -2.39 -0.02 3.10 16 40 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 42 H 0.06 2.44 7.96 -2.39 -0.02 2.42 16 43 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.09 2.27 8.08 -2.39 -0.02 2.25 16 46 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 47 H 0.13 -0.54 5.81 -2.39 -0.01 -0.55 16 48 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 50 H 0.40 9.50 8.01 -92.71 -0.74 8.76 16 Total: -1.00 -83.90 396.53 0.39 -83.51 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -0.52 Total: 14.39 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 5.75 Total: 10.04 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -6.77 Total: -120.39 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -0.10 Total: -35.18 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -83.90 0.39 -83.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161265285.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.542 kcal (2) G-P(sol) polarization free energy of solvation -83.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds