Wall clock time and date at job start Tue Mar 31 2020 18:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.46886 * 180.02562 * 6 5 4 8 8 N 1.46902 * 109.46901 * 180.02562 * 7 6 5 9 9 C 1.46907 * 110.99665 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47095 * 179.97438 * 9 8 7 11 11 O 1.21303 * 119.99942 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00172 * 179.97438 * 10 9 8 13 13 C 1.37104 * 120.00010 * 179.97438 * 12 10 9 14 14 H 1.08003 * 119.99731 * 0.02562 * 13 12 10 15 15 C 1.38945 * 119.99713 * 180.02562 * 13 12 10 16 16 N 1.31407 * 120.00428 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99709 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47138 * 89.99803 * 17 15 13 19 19 H 1.48501 * 109.47105 * 210.00002 * 17 15 13 20 20 H 1.48505 * 109.47112 * 329.99657 * 17 15 13 21 21 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 22 22 C 1.34775 * 120.00290 * 275.00553 * 21 2 1 23 23 O 1.21616 * 120.00134 * 0.02562 * 22 21 2 24 24 C 1.43200 * 119.99919 * 180.02562 * 22 21 2 25 25 C 4.88630 * 107.69970 * 105.53340 * 2 1 3 26 26 C 6.32555 * 108.20541 * 108.84132 * 2 1 3 27 27 C 1.53003 * 117.49462 * 227.30560 * 26 25 24 28 28 C 1.53001 * 117.49689 * 158.68370 * 26 25 24 29 29 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 30 30 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 31 31 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 33 33 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 37 37 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 38 38 H 1.09001 * 109.47109 * 299.99380 * 7 6 5 39 39 H 1.09002 * 109.47508 * 59.99571 * 7 6 5 40 40 H 1.00898 * 111.00229 * 56.04458 * 8 7 6 41 41 H 1.08995 * 109.46981 * 299.99659 * 9 8 7 42 42 H 1.08993 * 109.47289 * 60.00009 * 9 8 7 43 43 H 0.96992 * 119.99793 * 0.02562 * 12 10 9 44 44 H 0.96999 * 120.00502 * 180.02562 * 16 15 13 45 45 H 0.97003 * 119.99849 * 95.00425 * 21 2 1 46 46 H 1.08998 * 115.54678 * 13.01211 * 26 25 24 47 47 H 1.08990 * 117.50194 * 359.97438 * 27 26 25 48 48 H 1.08997 * 117.49323 * 145.02679 * 27 26 25 49 49 H 1.08998 * 117.49816 * 214.97986 * 28 26 25 50 50 H 1.09005 * 117.49678 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 6 4.0749 -1.3338 -2.5631 7 6 5.5998 -1.2263 -2.6272 8 7 6.0894 -1.9177 -3.8273 9 6 7.5530 -1.8345 -3.9224 10 6 8.0175 -2.5538 -5.1626 11 8 7.2088 -3.0840 -5.8949 12 7 9.3313 -2.6079 -5.4580 13 6 9.7539 -3.2628 -6.5860 14 1 9.0338 -3.7348 -7.2380 15 6 11.1084 -3.3190 -6.8902 16 7 11.9845 -2.7442 -6.0972 17 14 11.6841 -4.2106 -8.4275 18 1 11.7215 -3.2590 -9.5669 19 1 13.0434 -4.7634 -8.1993 20 1 10.7450 -5.3183 -8.7382 21 7 2.0183 -0.6905 1.1962 22 6 2.1469 -0.0182 2.3572 23 8 1.8572 1.1617 2.4119 24 6 2.6247 -0.6931 3.5263 25 6 3.0156 -1.2466 4.4850 26 6 3.5062 -1.9406 5.6869 27 6 4.0229 -1.0772 6.8396 28 6 5.0066 -1.8725 5.9789 29 1 -0.3635 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -0.2617 -2.1369 33 1 1.7517 -1.7714 -1.2056 34 1 3.9995 -1.0726 -0.4258 35 1 3.8532 0.4372 -1.3572 36 1 3.7866 -2.3841 -2.5200 37 1 3.6403 -0.8740 -3.4506 38 1 5.8885 -0.1761 -2.6702 39 1 6.0341 -1.6864 -1.7396 40 1 5.6519 -1.5515 -4.6594 41 1 7.8549 -0.7885 -3.9741 42 1 8.0012 -2.2990 -3.0442 43 1 9.9779 -2.1843 -4.8722 44 1 12.9301 -2.7832 -6.3098 45 1 2.2490 -1.6317 1.1527 46 1 2.9849 -2.8630 5.9429 47 1 3.9999 0.0045 6.7078 48 1 3.8415 -1.4316 7.8543 49 1 5.4723 -2.7501 6.4273 50 1 5.6304 -1.3143 5.2807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170666492.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:10 Heat of formation + Delta-G solvation = -17.698061 kcal Electronic energy + Delta-G solvation = -26472.311604 eV Core-core repulsion = 22500.923519 eV Total energy + Delta-G solvation = -3971.388085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.23613 -38.31623 -38.13336 -37.29163 -35.88493 -33.99722 -33.56487 -33.03678 -31.30171 -31.10909 -28.66740 -26.23460 -25.51110 -24.23471 -23.04194 -23.00095 -22.26105 -21.23931 -21.04421 -19.23059 -19.15433 -17.86831 -17.21875 -16.87187 -16.16849 -15.81563 -15.60130 -15.45121 -15.03275 -14.75899 -14.50930 -14.44867 -14.14367 -13.75703 -13.46489 -13.27575 -13.19946 -13.11271 -12.70987 -12.46404 -12.35232 -12.17713 -12.12875 -11.81867 -11.68920 -11.60707 -11.50467 -11.36431 -11.14161 -11.03636 -10.87412 -10.75464 -10.67189 -10.55091 -10.38860 -10.21689 -10.20989 -9.53060 -9.50274 -8.44555 -8.03293 -7.94812 -6.41008 -3.81909 1.11919 1.75051 2.61708 3.00689 3.18313 3.26797 3.32959 3.45863 3.68373 3.92017 4.04770 4.18225 4.21803 4.34344 4.41107 4.52639 4.61643 4.67774 4.92820 4.98351 5.04479 5.04770 5.13311 5.19215 5.24370 5.25507 5.30041 5.34638 5.42255 5.49019 5.49302 5.51844 5.62653 5.66483 5.75697 5.80619 5.84030 5.89435 6.00906 6.04696 6.17713 6.22512 6.30415 6.77335 7.01607 7.25807 7.55793 7.69974 7.71986 8.07299 8.62275 9.18594 9.55293 10.06902 10.76779 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011586 B = 0.001520 C = 0.001371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.126870 B =18413.662378 C =20424.453271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 H 0.092 0.908 4 C -0.127 4.127 5 C -0.119 4.119 6 C -0.117 4.117 7 C 0.058 3.942 8 N -0.671 5.671 9 C 0.050 3.950 10 C 0.441 3.559 11 O -0.584 6.584 12 N -0.564 5.564 13 C -0.300 4.300 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.931 3.069 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.269 1.269 21 N -0.710 5.710 22 C 0.636 3.364 23 O -0.524 6.524 24 C -0.223 4.223 25 C -0.048 4.048 26 C -0.069 4.069 27 C -0.161 4.161 28 C -0.158 4.158 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.024 0.976 39 H 0.068 0.932 40 H 0.348 0.652 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.405 0.595 46 H 0.137 0.863 47 H 0.101 0.899 48 H 0.109 0.891 49 H 0.110 0.890 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.798 4.333 23.534 30.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.037 3.963 3 H 0.110 0.890 4 C -0.165 4.165 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.071 4.071 8 N -0.303 5.303 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.468 6.468 12 N -0.201 5.201 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.758 3.242 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 N -0.362 5.362 22 C 0.423 3.577 23 O -0.401 6.401 24 C -0.226 4.226 25 C -0.050 4.050 26 C -0.087 4.087 27 C -0.198 4.198 28 C -0.194 4.194 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.042 0.958 39 H 0.087 0.913 40 H 0.167 0.833 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.240 0.760 46 H 0.155 0.845 47 H 0.120 0.880 48 H 0.127 0.873 49 H 0.128 0.872 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -19.334 4.226 23.305 30.574 hybrid contribution 1.060 0.274 -0.620 1.258 sum -18.274 4.500 22.685 29.475 Atomic orbital electron populations 1.22194 0.94933 1.02380 1.02821 1.21123 0.94133 0.97767 0.83260 0.88967 1.21928 0.96424 1.01299 0.96825 1.21572 0.94556 1.01086 0.98472 1.21549 0.94941 1.01484 0.97471 1.21976 0.95033 0.95837 0.94261 1.60087 1.04838 1.60052 1.05313 1.21667 0.89046 0.98689 0.98827 1.19835 0.83402 0.86095 0.88046 1.90520 1.53420 1.50468 1.52376 1.41867 1.05443 1.48956 1.23823 1.19716 0.92003 1.30254 1.00969 0.87912 1.25262 0.95608 0.97836 0.99252 1.69610 1.02521 1.44346 1.37879 0.85850 0.77892 0.79519 0.80975 1.20429 1.20928 1.19403 1.45967 1.66779 1.14293 1.09120 1.14632 0.77283 0.85186 0.80601 1.90864 1.49719 1.14907 1.84655 1.20618 1.04314 1.00638 0.96988 1.21392 0.93691 0.96065 0.93882 1.18962 0.98252 1.00614 0.90883 1.23131 1.02244 0.99077 0.95301 1.23132 0.90186 1.03357 1.02771 0.92052 0.91195 0.92269 0.89847 0.90991 0.91870 0.91857 0.90914 0.91936 0.95756 0.91337 0.83266 0.93964 0.89701 0.77462 0.91884 0.76041 0.84510 0.88010 0.87287 0.87158 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 9.48 37.16 0.35 -0.75 16 2 C 0.14 1.02 2.57 -67.94 -0.17 0.85 16 3 H 0.09 0.82 7.58 -51.93 -0.39 0.42 16 4 C -0.13 -0.80 4.75 -26.74 -0.13 -0.92 16 5 C -0.12 -0.93 5.10 -26.73 -0.14 -1.07 16 6 C -0.12 -1.15 5.47 -26.73 -0.15 -1.30 16 7 C 0.06 0.72 5.69 -3.82 -0.02 0.70 16 8 N -0.67 -11.06 6.13 -115.05 -0.70 -11.77 16 9 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 10 C 0.44 10.61 7.82 -10.99 -0.09 10.52 16 11 O -0.58 -16.11 15.78 5.54 0.09 -16.02 16 12 N -0.56 -14.52 5.29 -10.96 -0.06 -14.57 16 13 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 14 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 15 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 16 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 17 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 N -0.71 -5.43 4.52 -56.25 -0.25 -5.69 16 22 C 0.64 6.80 7.61 -14.34 -0.11 6.69 16 23 O -0.52 -7.43 16.75 5.26 0.09 -7.34 16 24 C -0.22 -2.21 13.61 -38.84 -0.53 -2.74 16 25 C -0.05 -0.40 13.47 -37.12 -0.50 -0.90 16 26 C -0.07 -0.37 6.22 -93.40 -0.58 -0.95 16 27 C -0.16 -0.70 10.21 -26.73 -0.27 -0.97 16 28 C -0.16 -0.69 10.21 -26.73 -0.27 -0.96 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.50 7.75 -51.93 -0.40 0.09 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.35 5.89 8.43 -39.29 -0.33 5.56 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 44 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.40 2.30 8.57 -40.82 -0.35 1.95 16 46 H 0.14 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 49 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 430.06 15.07 6.48 6.48 Total: -1.00 -34.35 430.06 -10.03 -44.38 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -8.50 Total: 11.41 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -2.88 Total: 0.97 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.29 Total: -56.01 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.18 Total: -23.36 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.48 Total: 6.48 kcal Total: -34.35 -10.03 -44.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170666492.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.681 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds