Wall clock time and date at job start Tue Mar 31 2020 18:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.46886 * 180.02562 * 6 5 4 8 8 N 1.46902 * 109.46901 * 180.02562 * 7 6 5 9 9 C 1.46907 * 110.99665 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47095 * 179.97438 * 9 8 7 11 11 O 1.21303 * 119.99942 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00172 * 179.97438 * 10 9 8 13 13 C 1.37104 * 120.00010 * 179.97438 * 12 10 9 14 14 H 1.08003 * 119.99731 * 0.02562 * 13 12 10 15 15 C 1.38945 * 119.99713 * 180.02562 * 13 12 10 16 16 N 1.31407 * 120.00428 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99709 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47138 * 89.99803 * 17 15 13 19 19 H 1.48501 * 109.47105 * 210.00002 * 17 15 13 20 20 H 1.48505 * 109.47112 * 329.99657 * 17 15 13 21 21 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 22 22 C 1.34775 * 120.00290 * 275.00553 * 21 2 1 23 23 O 1.21616 * 120.00134 * 0.02562 * 22 21 2 24 24 C 1.43200 * 119.99919 * 180.02562 * 22 21 2 25 25 C 4.88630 * 107.69970 * 105.53340 * 2 1 3 26 26 C 6.32555 * 108.20541 * 108.84132 * 2 1 3 27 27 C 1.53003 * 117.49462 * 227.30560 * 26 25 24 28 28 C 1.53001 * 117.49689 * 158.68370 * 26 25 24 29 29 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 30 30 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 31 31 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 33 33 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 37 37 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 38 38 H 1.09001 * 109.47109 * 299.99380 * 7 6 5 39 39 H 1.09002 * 109.47508 * 59.99571 * 7 6 5 40 40 H 1.00898 * 111.00229 * 56.04458 * 8 7 6 41 41 H 1.08995 * 109.46981 * 299.99659 * 9 8 7 42 42 H 1.08993 * 109.47289 * 60.00009 * 9 8 7 43 43 H 0.96992 * 119.99793 * 0.02562 * 12 10 9 44 44 H 0.96999 * 120.00502 * 180.02562 * 16 15 13 45 45 H 0.97003 * 119.99849 * 95.00425 * 21 2 1 46 46 H 1.08998 * 115.54678 * 13.01211 * 26 25 24 47 47 H 1.08990 * 117.50194 * 359.97438 * 27 26 25 48 48 H 1.08997 * 117.49323 * 145.02679 * 27 26 25 49 49 H 1.08998 * 117.49816 * 214.97986 * 28 26 25 50 50 H 1.09005 * 117.49678 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 6 4.0749 -1.3338 -2.5631 7 6 5.5998 -1.2263 -2.6272 8 7 6.0894 -1.9177 -3.8273 9 6 7.5530 -1.8345 -3.9224 10 6 8.0175 -2.5538 -5.1626 11 8 7.2088 -3.0840 -5.8949 12 7 9.3313 -2.6079 -5.4580 13 6 9.7539 -3.2628 -6.5860 14 1 9.0338 -3.7348 -7.2380 15 6 11.1084 -3.3190 -6.8902 16 7 11.9845 -2.7442 -6.0972 17 14 11.6841 -4.2106 -8.4275 18 1 11.7215 -3.2590 -9.5669 19 1 13.0434 -4.7634 -8.1993 20 1 10.7450 -5.3183 -8.7382 21 7 2.0183 -0.6905 1.1962 22 6 2.1469 -0.0182 2.3572 23 8 1.8572 1.1617 2.4119 24 6 2.6247 -0.6931 3.5263 25 6 3.0156 -1.2466 4.4850 26 6 3.5062 -1.9406 5.6869 27 6 4.0229 -1.0772 6.8396 28 6 5.0066 -1.8725 5.9789 29 1 -0.3635 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -0.2617 -2.1369 33 1 1.7517 -1.7714 -1.2056 34 1 3.9995 -1.0726 -0.4258 35 1 3.8532 0.4372 -1.3572 36 1 3.7866 -2.3841 -2.5200 37 1 3.6403 -0.8740 -3.4506 38 1 5.8885 -0.1761 -2.6702 39 1 6.0341 -1.6864 -1.7396 40 1 5.6519 -1.5515 -4.6594 41 1 7.8549 -0.7885 -3.9741 42 1 8.0012 -2.2990 -3.0442 43 1 9.9779 -2.1843 -4.8722 44 1 12.9301 -2.7832 -6.3098 45 1 2.2490 -1.6317 1.1527 46 1 2.9849 -2.8630 5.9429 47 1 3.9999 0.0045 6.7078 48 1 3.8415 -1.4316 7.8543 49 1 5.4723 -2.7501 6.4273 50 1 5.6304 -1.3143 5.2807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170666492.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:09 Heat of formation + Delta-G solvation = -41.034009 kcal Electronic energy + Delta-G solvation = -26473.323526 eV Core-core repulsion = 22500.923519 eV Total energy + Delta-G solvation = -3972.400008 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.01035 -40.17063 -38.54056 -38.12903 -37.00439 -35.92202 -34.50010 -33.83119 -33.26221 -31.93820 -29.69760 -27.65440 -26.24981 -25.72878 -23.89428 -23.32071 -23.03273 -22.07073 -21.71697 -21.03053 -19.91462 -19.85542 -17.86047 -17.78785 -17.45899 -17.11408 -16.55730 -16.28708 -16.01816 -16.00969 -15.91021 -15.42976 -15.33917 -15.18010 -14.63299 -14.44419 -14.04552 -13.69165 -13.55468 -13.51674 -13.34147 -13.26909 -13.01663 -12.96403 -12.79421 -12.45664 -12.43218 -12.37637 -12.31392 -12.19434 -12.11927 -11.86282 -11.66202 -11.53180 -11.51590 -11.39817 -11.11061 -10.75620 -10.36710 -10.22517 -10.02957 -9.33475 -8.47492 -5.96747 0.38949 1.09945 1.38038 1.41885 1.54963 1.95915 2.03448 2.28942 2.32057 2.91393 2.99775 3.13074 3.19513 3.48700 3.73757 3.81194 3.95012 3.98671 4.02649 4.03254 4.27080 4.29193 4.30400 4.42685 4.45956 4.50302 4.54327 4.61332 4.70794 4.74753 4.77205 4.86877 4.90965 4.94979 4.97731 5.03034 5.06739 5.18703 5.19288 5.29077 5.32240 5.39998 5.46900 5.50157 5.89381 6.10304 6.10889 6.34278 6.41339 6.58816 6.99406 7.11219 7.54529 8.09697 8.69900 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011586 B = 0.001520 C = 0.001371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.126870 B =18413.662378 C =20424.453271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.074 0.926 4 C -0.117 4.117 5 C -0.112 4.112 6 C -0.108 4.108 7 C 0.058 3.942 8 N -0.685 5.685 9 C 0.064 3.936 10 C 0.437 3.563 11 O -0.623 6.623 12 N -0.573 5.573 13 C -0.337 4.337 14 H 0.079 0.921 15 C -0.013 4.013 16 N -0.920 5.920 17 Si 0.995 3.005 18 H -0.270 1.270 19 H -0.270 1.270 20 H -0.273 1.273 21 N -0.695 5.695 22 C 0.635 3.365 23 O -0.570 6.570 24 C -0.266 4.266 25 C -0.029 4.029 26 C -0.085 4.085 27 C -0.157 4.157 28 C -0.153 4.153 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.344 0.656 41 H 0.064 0.936 42 H 0.102 0.898 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.416 0.584 46 H 0.162 0.838 47 H 0.089 0.911 48 H 0.132 0.868 49 H 0.132 0.868 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.651 3.468 24.471 30.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.093 0.907 4 C -0.155 4.155 5 C -0.150 4.150 6 C -0.146 4.146 7 C -0.070 4.070 8 N -0.317 5.317 9 C -0.068 4.068 10 C 0.224 3.776 11 O -0.510 6.510 12 N -0.210 5.210 13 C -0.466 4.466 14 H 0.097 0.903 15 C -0.213 4.213 16 N -0.561 5.561 17 Si 0.818 3.182 18 H -0.196 1.196 19 H -0.195 1.195 20 H -0.198 1.198 21 N -0.346 5.346 22 C 0.422 3.578 23 O -0.451 6.451 24 C -0.269 4.269 25 C -0.031 4.031 26 C -0.102 4.102 27 C -0.193 4.193 28 C -0.190 4.190 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.092 0.908 40 H 0.162 0.838 41 H 0.082 0.918 42 H 0.120 0.880 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.253 0.747 46 H 0.179 0.821 47 H 0.107 0.893 48 H 0.150 0.850 49 H 0.150 0.850 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.178 3.350 24.256 31.103 hybrid contribution 1.012 0.530 -0.846 1.421 sum -18.166 3.880 23.411 29.885 Atomic orbital electron populations 1.22152 0.94214 1.03022 1.02477 1.21151 0.94660 0.97034 0.83408 0.90743 1.21859 0.95196 1.02001 0.96444 1.21498 0.95588 1.00512 0.97439 1.21476 0.93209 1.01496 0.98459 1.22092 0.96561 0.95883 0.92481 1.60117 1.03697 1.61380 1.06521 1.21535 0.90348 0.99012 0.95948 1.20885 0.82451 0.85108 0.89148 1.90485 1.54259 1.52039 1.54208 1.41938 1.06309 1.49208 1.23535 1.19697 0.92443 1.32183 1.02291 0.90261 1.26062 0.95112 0.98044 1.02035 1.69670 1.02966 1.44478 1.38994 0.84902 0.77616 0.78270 0.77383 1.19574 1.19488 1.19758 1.45918 1.65503 1.14690 1.08452 1.14804 0.76784 0.84728 0.81447 1.90827 1.52087 1.16776 1.85444 1.20694 1.06121 1.02157 0.97929 1.22137 0.92157 0.95045 0.93790 1.19328 0.99272 1.01576 0.90068 1.23234 1.01627 0.98392 0.96096 1.23226 0.89387 1.03995 1.02368 0.94072 0.89877 0.91083 0.88829 0.89711 0.91826 0.92244 0.91340 0.91772 0.94907 0.90850 0.83799 0.91825 0.87976 0.76978 0.91255 0.74722 0.82114 0.89262 0.84964 0.84998 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.48 71.98 0.68 -1.34 16 2 C 0.14 1.97 2.57 44.99 0.12 2.09 16 3 H 0.07 1.35 7.58 -2.39 -0.02 1.33 16 4 C -0.12 -1.26 4.75 30.59 0.15 -1.12 16 5 C -0.11 -1.58 5.10 30.59 0.16 -1.42 16 6 C -0.11 -1.95 5.47 30.59 0.17 -1.79 16 7 C 0.06 1.34 5.69 86.30 0.49 1.83 16 8 N -0.68 -21.82 6.13 -517.92 -3.17 -25.00 16 9 C 0.06 2.25 6.17 85.56 0.53 2.77 16 10 C 0.44 21.15 7.82 87.66 0.69 21.83 16 11 O -0.62 -35.05 15.78 -3.10 -0.05 -35.10 16 12 N -0.57 -29.81 5.29 -306.98 -1.62 -31.43 16 13 C -0.34 -19.32 9.68 84.04 0.81 -18.51 16 14 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 15 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 16 N -0.92 -49.86 13.05 21.66 0.28 -49.58 16 17 Si 0.99 43.00 29.55 68.60 2.03 45.03 16 18 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 19 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 21 N -0.69 -10.49 4.52 -450.14 -2.04 -12.52 16 22 C 0.63 14.13 7.61 85.49 0.65 14.78 16 23 O -0.57 -17.15 16.75 -4.08 -0.07 -17.22 16 24 C -0.27 -5.42 13.61 30.02 0.41 -5.01 16 25 C -0.03 -0.47 13.47 31.13 0.42 -0.06 16 26 C -0.09 -0.76 6.22 -12.60 -0.08 -0.84 16 27 C -0.16 -1.09 10.21 30.60 0.31 -0.78 16 28 C -0.15 -1.06 10.21 30.60 0.31 -0.75 16 29 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.90 7.75 -2.39 -0.02 0.88 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.34 11.43 8.43 -89.70 -0.76 10.67 16 41 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 43 H 0.40 19.55 7.90 -92.71 -0.73 18.82 16 44 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 45 H 0.42 4.34 8.57 -92.71 -0.79 3.55 16 46 H 0.16 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 49 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 50 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 Total: -1.00 -75.84 430.06 0.32 -75.52 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: -1.32 Total: 38.83 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 6.28 Total: 11.47 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -6.55 Total: -118.52 kcal Atomic # 8 Polarization: -52.20 SS G_CDS: -0.12 Total: -52.32 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -75.84 0.32 -75.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170666492.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.490 kcal (2) G-P(sol) polarization free energy of solvation -75.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds