Wall clock time and date at job start Tue Mar 31 2020 18:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 C 1.52996 * 109.47413 * 239.99428 * 2 1 3 5 5 C 1.52997 * 109.47131 * 174.99889 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46953 * 179.97438 * 7 6 5 9 9 C 1.36942 * 120.00106 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99638 * 0.02562 * 9 8 7 11 11 C 1.38805 * 120.00269 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00146 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00181 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46941 * 60.00309 * 13 11 9 15 15 H 1.48494 * 109.47398 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47298 * 300.00594 * 13 11 9 17 17 N 1.46502 * 109.46680 * 119.99620 * 2 1 3 18 18 C 1.34781 * 120.00059 * 274.99983 * 17 2 1 19 19 O 1.21277 * 119.99934 * 0.02562 * 18 17 2 20 20 C 1.50699 * 119.99755 * 180.02562 * 18 17 2 21 21 C 1.53001 * 109.46705 * 179.97438 * 20 18 17 22 22 N 1.46501 * 109.47182 * 179.97438 * 21 20 18 23 23 C 1.35766 * 119.62528 * 89.99796 * 22 21 20 24 24 C 1.35345 * 120.70017 * 179.97438 * 23 22 21 25 25 C 1.40193 * 119.95346 * 0.02562 * 24 23 22 26 26 C 1.36399 * 119.26103 * 0.02562 * 25 24 23 27 27 C 1.34665 * 119.62424 * 269.73038 * 22 21 20 28 28 O 1.22061 * 119.98483 * 359.97438 * 27 22 21 29 29 H 1.09010 * 109.47120 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47133 * 299.99981 * 1 2 3 31 31 H 1.08998 * 109.47095 * 60.00889 * 1 2 3 32 32 H 1.09001 * 109.46993 * 54.99758 * 4 2 1 33 33 H 1.09004 * 109.47298 * 295.00173 * 4 2 1 34 34 H 1.09001 * 109.46832 * 60.00325 * 5 4 2 35 35 H 1.08993 * 109.47194 * 299.99846 * 5 4 2 36 36 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 37 37 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 38 38 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 39 39 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 40 40 H 0.96999 * 120.00356 * 0.02562 * 8 7 6 41 41 H 0.97000 * 120.00516 * 179.97438 * 12 11 9 42 42 H 0.96999 * 119.99931 * 95.00625 * 17 2 1 43 43 H 1.08993 * 109.47546 * 299.99667 * 20 18 17 44 44 H 1.09000 * 109.47454 * 60.00643 * 20 18 17 45 45 H 1.09002 * 109.47517 * 300.00110 * 21 20 18 46 46 H 1.09000 * 109.47237 * 59.99988 * 21 20 18 47 47 H 1.07993 * 119.64442 * 0.02562 * 23 22 21 48 48 H 1.08004 * 120.02399 * 180.02562 * 24 23 22 49 49 H 1.07999 * 120.36988 * 179.97438 * 25 24 23 50 50 H 1.08007 * 120.34815 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3135 6 6 4.0749 -1.3342 -2.5631 7 6 5.5998 -1.2267 -2.6271 8 7 6.0881 -1.9174 -3.8232 9 6 7.4302 -1.9538 -4.0929 10 1 8.1287 -1.4736 -3.4235 11 6 7.8930 -2.6087 -5.2258 12 7 7.0419 -3.1943 -6.0413 13 14 9.7238 -2.6589 -5.5933 14 1 10.4348 -3.3299 -4.4756 15 1 9.9557 -3.4126 -6.8516 16 1 10.2364 -1.2734 -5.7452 17 7 2.0183 -0.6906 1.1963 18 6 2.1469 -0.0181 2.3572 19 8 1.8581 1.1585 2.4117 20 6 2.6497 -0.7284 3.5876 21 6 2.7016 0.2550 4.7586 22 7 3.1898 -0.4356 5.9549 23 6 4.5220 -0.4674 6.2148 24 6 4.9967 -1.0986 7.3139 25 6 4.1091 -1.7289 8.1972 26 6 2.7712 -1.6968 7.9339 27 6 2.3116 -1.0269 6.7871 28 8 1.1165 -0.9851 6.5427 29 1 -0.3634 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.6054 -0.2619 -2.1369 33 1 1.7517 -1.7716 -1.2054 34 1 3.9994 -1.0728 -0.4257 35 1 3.8532 0.4369 -1.3573 36 1 3.7865 -2.3844 -2.5197 37 1 3.6403 -0.8744 -3.4506 38 1 5.8885 -0.1765 -2.6701 39 1 6.0340 -1.6869 -1.7395 40 1 5.4608 -2.3484 -4.4245 41 1 7.3652 -3.6516 -6.8332 42 1 2.2490 -1.6317 1.1527 43 1 1.9775 -1.5506 3.8327 44 1 3.6491 -1.1201 3.3981 45 1 3.3741 1.0770 4.5133 46 1 1.7025 0.6472 4.9483 47 1 5.2100 0.0169 5.5378 48 1 6.0586 -1.1168 7.5102 49 1 4.4806 -2.2349 9.0760 50 1 2.0717 -2.1762 8.6028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171108048.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:33 Heat of formation + Delta-G solvation = -50.133289 kcal Electronic energy + Delta-G solvation = -27655.786055 eV Core-core repulsion = 23682.991473 eV Total energy + Delta-G solvation = -3972.794582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.77119 -40.12730 -37.29112 -37.14475 -35.53355 -35.22662 -33.32408 -32.15062 -31.06878 -30.30388 -30.04539 -27.47555 -25.85024 -24.30210 -24.07144 -22.83064 -22.11456 -20.99575 -20.75246 -20.64660 -18.26339 -17.72869 -17.21543 -17.02002 -16.65524 -16.55610 -15.91845 -15.80702 -15.07884 -14.97193 -14.73397 -14.54698 -14.22325 -13.94382 -13.82073 -13.43587 -13.17910 -13.09670 -12.97880 -12.88920 -12.75657 -12.42101 -12.36232 -12.16287 -11.80171 -11.67846 -11.49142 -11.29892 -11.02366 -10.81565 -10.74244 -10.64645 -10.46362 -10.34250 -10.31786 -10.10432 -10.02472 -9.68388 -9.30381 -8.87113 -8.40936 -6.92180 -5.76790 -3.05461 0.39432 1.45991 2.12424 2.33517 2.93950 3.25864 3.43085 3.47117 3.48548 4.11438 4.19024 4.25723 4.42665 4.45027 4.54933 4.63230 4.67732 4.80363 4.84740 4.87823 4.94389 4.95484 5.22793 5.23249 5.37559 5.38823 5.42951 5.52910 5.54745 5.58629 5.64917 5.66671 5.75497 5.84844 5.86542 5.93402 6.07497 6.07977 6.17813 6.27020 6.33304 6.36135 6.43144 6.65936 6.86621 6.90717 7.20758 7.64267 7.68461 7.92158 8.42515 9.53073 10.12305 10.46759 11.46168 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010939 B = 0.001871 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.983587 B =14964.588985 C =17060.399595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.140 3.860 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.153 3.847 8 N -0.735 5.735 9 C -0.240 4.240 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.720 5.720 18 C 0.522 3.478 19 O -0.541 6.541 20 C -0.158 4.158 21 C 0.106 3.894 22 N -0.496 5.496 23 C 0.135 3.865 24 C -0.234 4.234 25 C -0.016 4.016 26 C -0.246 4.246 27 C 0.511 3.489 28 O -0.551 6.551 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.402 0.598 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.109 0.891 47 H 0.164 0.836 48 H 0.146 0.854 49 H 0.134 0.866 50 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.852 4.557 27.223 29.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.151 4.151 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.371 4.371 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.371 5.371 18 C 0.308 3.692 19 O -0.419 6.419 20 C -0.199 4.199 21 C -0.015 4.015 22 N -0.207 5.207 23 C 0.007 3.993 24 C -0.257 4.257 25 C -0.037 4.037 26 C -0.268 4.268 27 C 0.313 3.687 28 O -0.433 6.433 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.236 0.764 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.128 0.872 47 H 0.181 0.819 48 H 0.164 0.836 49 H 0.152 0.848 50 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.686 5.481 27.057 29.603 hybrid contribution 1.128 -0.818 -0.482 1.474 sum -9.559 4.664 26.575 28.624 Atomic orbital electron populations 1.22180 0.95303 1.02163 1.02558 1.21071 0.93824 0.97704 0.83761 0.89255 1.21947 0.96873 1.00984 0.96737 1.21514 0.93942 1.01067 0.98606 1.21733 0.97261 1.00288 0.97121 1.20640 0.90987 0.95295 0.90555 1.42383 1.05328 1.64993 1.25189 1.19201 0.83912 1.28510 1.05511 0.91299 1.24756 0.97759 1.00937 0.97712 1.69648 1.32879 1.40674 1.15123 0.86249 0.85071 0.77480 0.77277 1.21278 1.21658 1.21265 1.46110 1.67121 1.14223 1.09692 1.20227 0.77522 0.87175 0.84315 1.90725 1.50198 1.15928 1.85032 1.21963 1.04278 1.00393 0.93233 1.21712 1.04199 0.94067 0.81562 1.45618 1.06850 1.45571 1.22639 1.22059 0.84303 0.95615 0.97285 1.20703 1.01272 1.06688 0.97071 1.21476 0.92970 0.92131 0.97171 1.22152 0.97085 1.07655 0.99901 1.17222 0.86259 0.80819 0.84430 1.90983 1.14677 1.62101 1.75543 0.92458 0.92235 0.91447 0.90136 0.91313 0.92214 0.91993 0.92127 0.92021 0.96607 0.96704 0.78338 0.93471 0.76364 0.87955 0.88136 0.88032 0.87225 0.81908 0.83638 0.84782 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.48 37.16 0.35 -1.09 16 2 C 0.14 1.30 2.57 -67.93 -0.17 1.13 16 3 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 4 C -0.13 -1.19 4.75 -26.73 -0.13 -1.32 16 5 C -0.11 -1.32 5.10 -26.73 -0.14 -1.45 16 6 C -0.13 -1.94 5.33 -26.73 -0.14 -2.09 16 7 C 0.15 3.08 6.26 -4.05 -0.03 3.05 16 8 N -0.73 -18.97 5.60 -59.91 -0.34 -19.30 16 9 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 10 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 11 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 12 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 13 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 N -0.72 -6.04 4.53 -53.81 -0.24 -6.28 16 18 C 0.52 5.03 7.79 -10.98 -0.09 4.94 16 19 O -0.54 -7.11 15.64 5.56 0.09 -7.02 16 20 C -0.16 -1.12 6.02 -27.88 -0.17 -1.29 16 21 C 0.11 0.83 4.63 -4.04 -0.02 0.81 16 22 N -0.50 -3.77 2.58 -119.77 -0.31 -4.08 16 23 C 0.13 0.64 10.28 -16.84 -0.17 0.47 16 24 C -0.23 -0.99 10.01 -39.88 -0.40 -1.39 16 25 C -0.02 -0.08 10.10 -39.51 -0.40 -0.48 16 26 C -0.25 -1.92 9.99 -39.38 -0.39 -2.31 16 27 C 0.51 5.30 7.41 -15.44 -0.11 5.18 16 28 O -0.55 -7.89 16.63 4.86 0.08 -7.81 16 29 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.38 10.33 7.67 -40.82 -0.31 10.02 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.40 2.60 8.60 -40.82 -0.35 2.24 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.10 0.65 7.97 -51.93 -0.41 0.23 16 46 H 0.11 1.13 7.33 -51.93 -0.38 0.75 16 47 H 0.16 0.30 8.04 -52.49 -0.42 -0.13 16 48 H 0.15 0.28 8.06 -52.48 -0.42 -0.14 16 49 H 0.13 0.34 8.06 -52.49 -0.42 -0.08 16 50 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 417.11 15.07 6.29 6.29 Total: -1.00 -36.78 417.11 -9.55 -46.33 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -8.56 Total: 5.58 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -2.25 Total: -3.38 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.16 Total: -57.42 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.17 Total: -14.83 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -36.78 -9.55 -46.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171108048.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.807 kcal (2) G-P(sol) polarization free energy of solvation -36.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds