Wall clock time and date at job start Tue Mar 31 2020 18:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 C 1.52996 * 109.47413 * 239.99428 * 2 1 3 5 5 C 1.52997 * 109.47131 * 174.99889 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46953 * 179.97438 * 7 6 5 9 9 C 1.36942 * 120.00106 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99638 * 0.02562 * 9 8 7 11 11 C 1.38805 * 120.00269 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00146 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00181 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46941 * 60.00309 * 13 11 9 15 15 H 1.48494 * 109.47398 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47298 * 300.00594 * 13 11 9 17 17 N 1.46502 * 109.46680 * 119.99620 * 2 1 3 18 18 C 1.34781 * 120.00059 * 274.99983 * 17 2 1 19 19 O 1.21277 * 119.99934 * 0.02562 * 18 17 2 20 20 C 1.50699 * 119.99755 * 180.02562 * 18 17 2 21 21 C 1.53001 * 109.46705 * 179.97438 * 20 18 17 22 22 N 1.46501 * 109.47182 * 179.97438 * 21 20 18 23 23 C 1.35766 * 119.62528 * 89.99796 * 22 21 20 24 24 C 1.35345 * 120.70017 * 179.97438 * 23 22 21 25 25 C 1.40193 * 119.95346 * 0.02562 * 24 23 22 26 26 C 1.36399 * 119.26103 * 0.02562 * 25 24 23 27 27 C 1.34665 * 119.62424 * 269.73038 * 22 21 20 28 28 O 1.22061 * 119.98483 * 359.97438 * 27 22 21 29 29 H 1.09010 * 109.47120 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47133 * 299.99981 * 1 2 3 31 31 H 1.08998 * 109.47095 * 60.00889 * 1 2 3 32 32 H 1.09001 * 109.46993 * 54.99758 * 4 2 1 33 33 H 1.09004 * 109.47298 * 295.00173 * 4 2 1 34 34 H 1.09001 * 109.46832 * 60.00325 * 5 4 2 35 35 H 1.08993 * 109.47194 * 299.99846 * 5 4 2 36 36 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 37 37 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 38 38 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 39 39 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 40 40 H 0.96999 * 120.00356 * 0.02562 * 8 7 6 41 41 H 0.97000 * 120.00516 * 179.97438 * 12 11 9 42 42 H 0.96999 * 119.99931 * 95.00625 * 17 2 1 43 43 H 1.08993 * 109.47546 * 299.99667 * 20 18 17 44 44 H 1.09000 * 109.47454 * 60.00643 * 20 18 17 45 45 H 1.09002 * 109.47517 * 300.00110 * 21 20 18 46 46 H 1.09000 * 109.47237 * 59.99988 * 21 20 18 47 47 H 1.07993 * 119.64442 * 0.02562 * 23 22 21 48 48 H 1.08004 * 120.02399 * 180.02562 * 24 23 22 49 49 H 1.07999 * 120.36988 * 179.97438 * 25 24 23 50 50 H 1.08007 * 120.34815 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3135 6 6 4.0749 -1.3342 -2.5631 7 6 5.5998 -1.2267 -2.6271 8 7 6.0881 -1.9174 -3.8232 9 6 7.4302 -1.9538 -4.0929 10 1 8.1287 -1.4736 -3.4235 11 6 7.8930 -2.6087 -5.2258 12 7 7.0419 -3.1943 -6.0413 13 14 9.7238 -2.6589 -5.5933 14 1 10.4348 -3.3299 -4.4756 15 1 9.9557 -3.4126 -6.8516 16 1 10.2364 -1.2734 -5.7452 17 7 2.0183 -0.6906 1.1963 18 6 2.1469 -0.0181 2.3572 19 8 1.8581 1.1585 2.4117 20 6 2.6497 -0.7284 3.5876 21 6 2.7016 0.2550 4.7586 22 7 3.1898 -0.4356 5.9549 23 6 4.5220 -0.4674 6.2148 24 6 4.9967 -1.0986 7.3139 25 6 4.1091 -1.7289 8.1972 26 6 2.7712 -1.6968 7.9339 27 6 2.3116 -1.0269 6.7871 28 8 1.1165 -0.9851 6.5427 29 1 -0.3634 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.6054 -0.2619 -2.1369 33 1 1.7517 -1.7716 -1.2054 34 1 3.9994 -1.0728 -0.4257 35 1 3.8532 0.4369 -1.3573 36 1 3.7865 -2.3844 -2.5197 37 1 3.6403 -0.8744 -3.4506 38 1 5.8885 -0.1765 -2.6701 39 1 6.0340 -1.6869 -1.7395 40 1 5.4608 -2.3484 -4.4245 41 1 7.3652 -3.6516 -6.8332 42 1 2.2490 -1.6317 1.1527 43 1 1.9775 -1.5506 3.8327 44 1 3.6491 -1.1201 3.3981 45 1 3.3741 1.0770 4.5133 46 1 1.7025 0.6472 4.9483 47 1 5.2100 0.0169 5.5378 48 1 6.0586 -1.1168 7.5102 49 1 4.4806 -2.2349 9.0760 50 1 2.0717 -2.1762 8.6028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171108048.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:32 Heat of formation + Delta-G solvation = -74.482996 kcal Electronic energy + Delta-G solvation = -27656.841938 eV Core-core repulsion = 23682.991473 eV Total energy + Delta-G solvation = -3973.850465 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.36515 -40.90682 -38.14131 -37.95418 -36.86978 -35.99183 -34.77465 -33.19797 -32.30622 -31.24169 -30.67944 -28.82093 -26.49627 -25.86621 -24.65790 -23.81471 -23.19932 -22.05047 -21.80053 -21.43981 -19.11723 -18.87050 -18.28095 -17.82726 -17.43762 -17.10138 -16.68506 -16.62237 -16.55018 -16.14785 -15.53698 -15.35750 -15.31253 -15.07858 -14.91015 -14.57925 -14.49916 -14.12229 -13.92245 -13.78213 -13.30720 -13.20905 -13.03608 -12.87976 -12.84381 -12.82877 -12.69724 -12.45316 -12.30166 -12.25459 -12.19488 -11.87607 -11.81589 -11.48552 -11.39483 -11.21822 -11.01726 -10.92232 -10.86526 -10.09032 -9.00904 -8.96766 -7.95816 -5.25235 -0.06689 0.93268 1.47182 1.50672 1.53891 1.56965 1.58063 2.26854 2.56017 2.70547 3.37382 3.55943 3.62085 3.65727 3.77737 3.93413 4.01493 4.04196 4.06402 4.15383 4.20102 4.31929 4.35078 4.37233 4.42024 4.49305 4.60472 4.64412 4.68961 4.75574 4.79839 4.87698 4.93280 4.98564 5.02498 5.09975 5.12734 5.22045 5.26243 5.30984 5.42620 5.45270 5.46406 5.53782 5.58592 5.67409 6.10765 6.26782 6.51805 6.98563 7.20932 7.32408 8.09708 8.32398 9.27546 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010939 B = 0.001871 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.983587 B =14964.588985 C =17060.399595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.144 3.856 3 H 0.072 0.928 4 C -0.117 4.117 5 C -0.103 4.103 6 C -0.114 4.114 7 C 0.148 3.852 8 N -0.750 5.750 9 C -0.250 4.250 10 H 0.075 0.925 11 C -0.078 4.078 12 N -0.970 5.970 13 Si 0.977 3.023 14 H -0.275 1.275 15 H -0.294 1.294 16 H -0.278 1.278 17 N -0.712 5.712 18 C 0.520 3.480 19 O -0.581 6.581 20 C -0.146 4.146 21 C 0.108 3.892 22 N -0.493 5.493 23 C 0.129 3.871 24 C -0.229 4.229 25 C 0.006 3.994 26 C -0.282 4.282 27 C 0.492 3.508 28 O -0.613 6.613 29 H 0.066 0.934 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.014 0.986 39 H 0.020 0.980 40 H 0.373 0.627 41 H 0.252 0.748 42 H 0.414 0.586 43 H 0.097 0.903 44 H 0.131 0.869 45 H 0.119 0.881 46 H 0.075 0.925 47 H 0.199 0.801 48 H 0.180 0.820 49 H 0.165 0.835 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.411 4.224 28.254 29.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.040 3.960 3 H 0.090 0.910 4 C -0.155 4.155 5 C -0.141 4.141 6 C -0.152 4.152 7 C 0.022 3.978 8 N -0.393 5.393 9 C -0.382 4.382 10 H 0.093 0.907 11 C -0.271 4.271 12 N -0.621 5.621 13 Si 0.805 3.195 14 H -0.201 1.201 15 H -0.221 1.221 16 H -0.204 1.204 17 N -0.364 5.364 18 C 0.307 3.693 19 O -0.461 6.461 20 C -0.186 4.186 21 C -0.014 4.014 22 N -0.202 5.202 23 C 0.003 3.997 24 C -0.251 4.251 25 C -0.015 4.015 26 C -0.304 4.304 27 C 0.298 3.702 28 O -0.501 6.501 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.032 0.968 39 H 0.038 0.962 40 H 0.205 0.795 41 H 0.061 0.939 42 H 0.251 0.749 43 H 0.115 0.885 44 H 0.149 0.851 45 H 0.137 0.863 46 H 0.093 0.907 47 H 0.216 0.784 48 H 0.197 0.803 49 H 0.183 0.817 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.202 5.149 28.126 29.747 hybrid contribution 0.453 -0.674 -0.741 1.099 sum -7.750 4.475 27.385 28.810 Atomic orbital electron populations 1.22132 0.94872 1.02655 1.02107 1.20954 0.94090 0.96917 0.84035 0.90985 1.21840 0.95027 1.01829 0.96798 1.21412 0.95476 1.00263 0.96957 1.21611 0.93876 1.00877 0.98794 1.20859 0.94116 0.94302 0.88501 1.42645 1.04524 1.65420 1.26685 1.19631 0.85342 1.27750 1.05470 0.90712 1.25632 1.02327 1.01230 0.97861 1.69810 1.34805 1.41873 1.15563 0.85169 0.79756 0.77649 0.76933 1.20127 1.22064 1.20393 1.46066 1.66436 1.14745 1.09162 1.20621 0.76844 0.86746 0.85085 1.90711 1.51960 1.17767 1.85655 1.21883 1.05595 0.99554 0.91589 1.21630 1.02952 0.94798 0.81982 1.45577 1.07878 1.44744 1.21964 1.22757 0.83155 0.95477 0.98279 1.21198 1.02748 1.05099 0.96058 1.21882 0.91697 0.90268 0.97703 1.22121 0.98638 1.09705 0.99933 1.17665 0.85903 0.81239 0.85425 1.90934 1.17031 1.64973 1.77148 0.91454 0.94092 0.90525 0.89737 0.90009 0.91179 0.92425 0.92018 0.92641 0.96838 0.96166 0.79497 0.93942 0.74949 0.88500 0.85113 0.86284 0.90669 0.78378 0.80258 0.81728 0.83959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.48 71.98 0.68 -2.00 16 2 C 0.14 2.51 2.57 44.99 0.12 2.63 16 3 H 0.07 1.55 7.58 -2.39 -0.02 1.53 16 4 C -0.12 -1.93 4.75 30.59 0.15 -1.79 16 5 C -0.10 -2.18 5.10 30.60 0.16 -2.02 16 6 C -0.11 -3.33 5.33 30.60 0.16 -3.17 16 7 C 0.15 5.81 6.26 86.38 0.54 6.35 16 8 N -0.75 -38.53 5.60 -343.47 -1.92 -40.45 16 9 C -0.25 -14.10 9.99 84.03 0.84 -13.26 16 10 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 11 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 12 N -0.97 -59.46 13.06 21.65 0.28 -59.18 16 13 Si 0.98 45.81 29.55 68.60 2.03 47.83 16 14 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 15 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 17 N -0.71 -10.99 4.53 -442.53 -2.00 -12.99 16 18 C 0.52 9.75 7.79 87.66 0.68 10.44 16 19 O -0.58 -15.52 15.64 -3.02 -0.05 -15.57 16 20 C -0.15 -1.94 6.02 29.85 0.18 -1.76 16 21 C 0.11 1.69 4.63 86.38 0.40 2.09 16 22 N -0.49 -7.19 2.58 -650.97 -1.68 -8.87 16 23 C 0.13 0.84 10.28 83.42 0.86 1.70 16 24 C -0.23 -1.07 10.01 22.08 0.22 -0.85 16 25 C 0.01 0.05 10.10 22.32 0.23 0.27 16 26 C -0.28 -4.46 9.99 22.40 0.22 -4.24 16 27 C 0.49 10.78 7.41 84.82 0.63 11.41 16 28 O -0.61 -19.40 16.63 -5.52 -0.09 -19.49 16 29 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.07 1.35 7.75 -2.39 -0.02 1.33 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.37 20.28 7.67 -92.71 -0.71 19.57 16 41 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 42 H 0.41 4.43 8.60 -92.71 -0.80 3.63 16 43 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.12 1.39 7.97 -2.39 -0.02 1.37 16 46 H 0.07 1.73 7.33 -2.39 -0.02 1.71 16 47 H 0.20 -0.18 8.04 -2.91 -0.02 -0.20 16 48 H 0.18 -0.30 8.06 -2.91 -0.02 -0.32 16 49 H 0.17 0.23 8.06 -2.91 -0.02 0.21 16 50 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -83.11 417.11 2.51 -80.60 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: -0.58 Total: 26.37 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 6.53 Total: 1.75 kcal Atomic # 7 Polarization: -116.17 SS G_CDS: -5.33 Total: -121.50 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -0.14 Total: -35.06 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -83.11 2.51 -80.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171108048.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.121 kcal (2) G-P(sol) polarization free energy of solvation -83.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds