Wall clock time and date at job start Tue Mar 31 2020 18:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47236 * 2 1 4 4 C 1.53002 * 109.46974 * 239.99662 * 2 1 3 5 5 C 1.53000 * 109.47186 * 175.00003 * 4 2 1 6 6 C 1.52992 * 109.47230 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47230 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.47384 * 180.02562 * 7 6 5 9 9 C 1.36932 * 120.00209 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99830 * 0.02562 * 9 8 7 11 11 C 1.38807 * 120.00007 * 179.97438 * 9 8 7 12 12 N 1.31620 * 120.00259 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00095 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.46817 * 90.00179 * 13 11 9 15 15 H 1.48494 * 109.47001 * 210.00425 * 13 11 9 16 16 H 1.48500 * 109.46797 * 330.00676 * 13 11 9 17 17 N 1.46504 * 109.47164 * 119.99731 * 2 1 3 18 18 C 1.34768 * 120.00009 * 275.00032 * 17 2 1 19 19 O 1.21280 * 120.00433 * 359.97438 * 18 17 2 20 20 C 1.50706 * 120.00008 * 179.97438 * 18 17 2 21 21 C 1.50695 * 109.47214 * 179.97438 * 20 18 17 22 22 C 1.35451 * 126.77253 * 90.00141 * 21 20 18 23 23 C 1.41378 * 103.98546 * 179.97438 * 22 21 20 24 24 C 1.50708 * 126.80201 * 180.02562 * 23 22 21 25 25 C 1.52999 * 117.49801 * 343.73197 * 24 23 22 26 26 C 1.53002 * 117.49813 * 275.07198 * 24 23 22 27 27 N 1.30171 * 106.39621 * 0.02562 * 23 22 21 28 28 O 1.20923 * 111.60389 * 359.97438 * 27 23 22 29 29 H 1.09003 * 109.46814 * 59.99806 * 1 2 3 30 30 H 1.08995 * 109.47443 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47090 * 300.00461 * 1 2 3 32 32 H 1.08992 * 109.47095 * 295.00206 * 4 2 1 33 33 H 1.09004 * 109.46873 * 55.00283 * 4 2 1 34 34 H 1.09002 * 109.46804 * 300.00225 * 5 4 2 35 35 H 1.08998 * 109.46830 * 59.99652 * 5 4 2 36 36 H 1.08996 * 109.47525 * 300.00245 * 6 5 4 37 37 H 1.09004 * 109.46870 * 60.00255 * 6 5 4 38 38 H 1.09009 * 109.47212 * 300.00218 * 7 6 5 39 39 H 1.08995 * 109.47015 * 60.00115 * 7 6 5 40 40 H 0.97002 * 119.99042 * 0.02562 * 8 7 6 41 41 H 0.96997 * 120.00514 * 179.97438 * 12 11 9 42 42 H 0.97004 * 119.99307 * 94.99616 * 17 2 1 43 43 H 1.09002 * 109.46847 * 59.99686 * 20 18 17 44 44 H 1.08999 * 109.47194 * 300.00385 * 20 18 17 45 45 H 1.08005 * 128.00874 * 0.02562 * 22 21 20 46 46 H 1.08999 * 115.54934 * 129.40665 * 24 23 22 47 47 H 1.08998 * 117.49696 * 359.97438 * 25 24 23 48 48 H 1.08997 * 117.49815 * 145.02199 * 25 24 23 49 49 H 1.08996 * 117.50049 * 214.98522 * 26 24 23 50 50 H 1.08998 * 117.49849 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 6 4.0747 -1.3342 -2.5632 7 6 5.5996 -1.2268 -2.6274 8 7 6.0878 -1.9164 -3.8242 9 6 7.4298 -1.9526 -4.0940 10 1 8.1284 -1.4731 -3.4243 11 6 7.8924 -2.6065 -5.2277 12 7 7.0412 -3.1913 -6.0436 13 14 9.7233 -2.6565 -5.5954 14 1 10.3229 -3.8578 -4.9609 15 1 9.9316 -2.7165 -7.0644 16 1 10.3706 -1.4350 -5.0530 17 7 2.0184 -0.6906 1.1962 18 6 2.1471 -0.0182 2.3571 19 8 1.8591 1.1587 2.4115 20 6 2.6489 -0.7287 3.5878 21 6 2.7003 0.2398 4.7411 22 6 1.7087 0.4997 5.6265 23 6 2.2678 1.4688 6.4908 24 6 1.5957 2.1199 7.6723 25 6 0.0730 2.0075 7.7692 26 6 0.7201 3.3448 7.4003 27 7 3.4780 1.6874 6.0641 28 8 3.7362 1.0139 5.0935 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7516 -1.7715 -1.2055 33 1 1.6053 -0.2618 -2.1370 34 1 3.8531 0.4369 -1.3574 35 1 3.9994 -1.0728 -0.4260 36 1 3.7863 -2.3844 -2.5200 37 1 3.6400 -0.8742 -3.4507 38 1 5.8884 -0.1765 -2.6704 39 1 6.0338 -1.6869 -1.7399 40 1 5.4603 -2.3467 -4.4258 41 1 7.3643 -3.6479 -6.8360 42 1 2.2490 -1.6318 1.1526 43 1 3.6480 -1.1213 3.3986 44 1 1.9760 -1.5505 3.8326 45 1 0.7202 0.0663 5.6641 46 1 2.1620 2.1028 8.6035 47 1 -0.4428 1.4630 6.9782 48 1 -0.3627 1.9168 8.7642 49 1 0.7100 4.1333 8.1528 50 1 0.6305 3.6799 6.3670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171217552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:11 Heat of formation + Delta-G solvation = 37.928186 kcal Electronic energy + Delta-G solvation = -27576.148494 eV Core-core repulsion = 23607.172544 eV Total energy + Delta-G solvation = -3968.975950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.19588 -40.17720 -37.96567 -37.12750 -35.30254 -34.04901 -33.36616 -33.16072 -31.64136 -30.36372 -28.58186 -27.47485 -24.99302 -24.28505 -23.32550 -22.59212 -22.29453 -21.44614 -20.83940 -20.66329 -19.98137 -18.13562 -17.63439 -17.13472 -16.99879 -16.48094 -16.11129 -15.73156 -15.12449 -14.93480 -14.71269 -14.44645 -14.11101 -14.00353 -13.86347 -13.43960 -13.18129 -13.06083 -12.95354 -12.61624 -12.47654 -12.33434 -12.02486 -11.85908 -11.79857 -11.50096 -11.44073 -11.28876 -11.02378 -10.84716 -10.80765 -10.72789 -10.43576 -10.35038 -10.29598 -10.06541 -9.98942 -9.66735 -9.62025 -9.33789 -8.85206 -6.89728 -5.74928 -3.03297 1.13146 1.87282 2.28224 2.61644 3.02484 3.22549 3.44732 3.49791 3.51727 3.70651 4.03659 4.32918 4.36551 4.45270 4.53947 4.59170 4.65133 4.67017 4.79290 4.82573 4.87760 4.94038 5.11652 5.16353 5.21231 5.30325 5.35813 5.38319 5.40756 5.53550 5.57879 5.59114 5.63713 5.66032 5.70052 5.75613 5.85244 5.91360 6.06561 6.17007 6.29151 6.32430 6.38017 6.45864 6.89506 6.93406 7.16709 7.71792 7.88685 8.00520 8.44479 9.55298 10.14414 10.48964 11.48149 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017354 B = 0.001668 C = 0.001554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.051904 B =16780.119534 C =18014.061025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.070 0.930 11 C -0.015 4.015 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.719 5.719 18 C 0.516 3.484 19 O -0.531 6.531 20 C -0.065 4.065 21 C -0.007 4.007 22 C -0.215 4.215 23 C 0.047 3.953 24 C -0.087 4.087 25 C -0.163 4.163 26 C -0.163 4.163 27 N -0.356 5.356 28 O 0.109 5.891 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.403 0.597 43 H 0.123 0.877 44 H 0.128 0.872 45 H 0.169 0.831 46 H 0.122 0.878 47 H 0.099 0.901 48 H 0.104 0.896 49 H 0.103 0.897 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.662 5.424 26.647 33.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.153 4.153 6 C -0.163 4.163 7 C 0.024 3.976 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.211 4.211 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.371 5.371 18 C 0.301 3.699 19 O -0.407 6.407 20 C -0.106 4.106 21 C -0.071 4.071 22 C -0.236 4.236 23 C -0.111 4.111 24 C -0.106 4.106 25 C -0.200 4.200 26 C -0.201 4.201 27 N -0.058 5.058 28 O 0.041 5.959 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.216 0.784 41 H 0.064 0.936 42 H 0.238 0.762 43 H 0.141 0.859 44 H 0.146 0.854 45 H 0.186 0.814 46 H 0.140 0.860 47 H 0.117 0.883 48 H 0.122 0.878 49 H 0.121 0.879 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.676 7.125 27.087 33.664 hybrid contribution 0.244 -1.143 -0.632 1.329 sum -18.432 5.982 26.454 32.793 Atomic orbital electron populations 1.22173 0.95314 1.02099 1.02528 1.21078 0.93750 0.97792 0.83699 0.89272 1.21944 0.96939 1.00941 0.96655 1.21525 0.93880 1.01169 0.98680 1.21725 0.97276 1.00247 0.97096 1.20654 0.90989 0.95361 0.90565 1.42384 1.05317 1.65069 1.25108 1.19263 0.83940 1.28413 1.05432 0.91212 1.24741 0.97712 1.00970 0.97686 1.69660 1.32759 1.40859 1.15097 0.86182 0.85125 0.77679 0.77187 1.21729 1.21751 1.20764 1.46046 1.67329 1.14242 1.09494 1.20213 0.77992 0.87384 0.84295 1.90766 1.49356 1.15737 1.84818 1.20149 1.06145 0.95730 0.88529 1.23500 0.88346 0.96909 0.98357 1.22232 1.01587 1.02497 0.97296 1.22567 0.91304 0.98357 0.98902 1.20098 0.92724 1.02546 0.95250 1.23033 0.92907 1.00499 1.03559 1.23044 1.02267 0.91366 1.03420 1.73819 1.17815 1.13682 1.00515 1.84845 1.36547 1.40123 1.34367 0.91448 0.92412 0.92353 0.91254 0.90154 0.91972 0.92079 0.92120 0.92065 0.96574 0.96604 0.78365 0.93558 0.76236 0.85909 0.85434 0.81356 0.85969 0.88250 0.87778 0.87865 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.48 37.16 0.35 -0.91 16 2 C 0.14 1.22 2.58 -67.93 -0.17 1.04 16 3 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 4 C -0.13 -1.12 4.75 -26.73 -0.13 -1.24 16 5 C -0.11 -1.32 5.10 -26.73 -0.14 -1.45 16 6 C -0.13 -1.92 5.33 -26.73 -0.14 -2.07 16 7 C 0.15 3.08 6.26 -4.04 -0.03 3.06 16 8 N -0.73 -19.04 5.60 -59.90 -0.34 -19.38 16 9 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 10 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 11 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 12 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 13 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 N -0.72 -5.24 4.53 -53.80 -0.24 -5.48 16 18 C 0.52 4.67 7.79 -10.99 -0.09 4.58 16 19 O -0.53 -7.26 15.70 5.56 0.09 -7.17 16 20 C -0.06 -0.38 6.27 -29.03 -0.18 -0.56 16 21 C -0.01 -0.06 5.98 -35.31 -0.21 -0.28 16 22 C -0.21 -1.90 10.40 -39.38 -0.41 -2.31 16 23 C 0.05 0.49 6.95 -82.10 -0.57 -0.08 16 24 C -0.09 -0.68 6.33 -91.77 -0.58 -1.26 16 25 C -0.16 -0.90 10.05 -26.69 -0.27 -1.17 16 26 C -0.16 -1.11 10.24 -26.69 -0.27 -1.38 16 27 N -0.36 -4.56 12.07 33.42 0.40 -4.16 16 28 O 0.11 1.33 11.20 17.19 0.19 1.52 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.38 10.34 7.67 -40.82 -0.31 10.02 16 41 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.40 1.91 8.60 -40.82 -0.35 1.56 16 43 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.13 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.17 1.04 7.63 -52.48 -0.40 0.64 16 46 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.10 0.52 7.34 -51.93 -0.38 0.14 16 48 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 419.01 15.07 6.31 6.31 Total: -1.00 -36.29 419.01 -9.51 -45.80 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -8.55 Total: 4.36 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -3.08 Total: -11.60 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.55 Total: -56.86 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: 0.28 Total: -5.65 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -36.29 -9.51 -45.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171217552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.733 kcal (2) G-P(sol) polarization free energy of solvation -36.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds