Wall clock time and date at job start Tue Mar 31 2020 18:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47236 * 2 1 4 4 C 1.53002 * 109.46974 * 239.99662 * 2 1 3 5 5 C 1.53000 * 109.47186 * 175.00003 * 4 2 1 6 6 C 1.52992 * 109.47230 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47230 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.47384 * 180.02562 * 7 6 5 9 9 C 1.36932 * 120.00209 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99830 * 0.02562 * 9 8 7 11 11 C 1.38807 * 120.00007 * 179.97438 * 9 8 7 12 12 N 1.31620 * 120.00259 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00095 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.46817 * 90.00179 * 13 11 9 15 15 H 1.48494 * 109.47001 * 210.00425 * 13 11 9 16 16 H 1.48500 * 109.46797 * 330.00676 * 13 11 9 17 17 N 1.46504 * 109.47164 * 119.99731 * 2 1 3 18 18 C 1.34768 * 120.00009 * 275.00032 * 17 2 1 19 19 O 1.21280 * 120.00433 * 359.97438 * 18 17 2 20 20 C 1.50706 * 120.00008 * 179.97438 * 18 17 2 21 21 C 1.50695 * 109.47214 * 179.97438 * 20 18 17 22 22 C 1.35451 * 126.77253 * 90.00141 * 21 20 18 23 23 C 1.41378 * 103.98546 * 179.97438 * 22 21 20 24 24 C 1.50708 * 126.80201 * 180.02562 * 23 22 21 25 25 C 1.52999 * 117.49801 * 343.73197 * 24 23 22 26 26 C 1.53002 * 117.49813 * 275.07198 * 24 23 22 27 27 N 1.30171 * 106.39621 * 0.02562 * 23 22 21 28 28 O 1.20923 * 111.60389 * 359.97438 * 27 23 22 29 29 H 1.09003 * 109.46814 * 59.99806 * 1 2 3 30 30 H 1.08995 * 109.47443 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47090 * 300.00461 * 1 2 3 32 32 H 1.08992 * 109.47095 * 295.00206 * 4 2 1 33 33 H 1.09004 * 109.46873 * 55.00283 * 4 2 1 34 34 H 1.09002 * 109.46804 * 300.00225 * 5 4 2 35 35 H 1.08998 * 109.46830 * 59.99652 * 5 4 2 36 36 H 1.08996 * 109.47525 * 300.00245 * 6 5 4 37 37 H 1.09004 * 109.46870 * 60.00255 * 6 5 4 38 38 H 1.09009 * 109.47212 * 300.00218 * 7 6 5 39 39 H 1.08995 * 109.47015 * 60.00115 * 7 6 5 40 40 H 0.97002 * 119.99042 * 0.02562 * 8 7 6 41 41 H 0.96997 * 120.00514 * 179.97438 * 12 11 9 42 42 H 0.97004 * 119.99307 * 94.99616 * 17 2 1 43 43 H 1.09002 * 109.46847 * 59.99686 * 20 18 17 44 44 H 1.08999 * 109.47194 * 300.00385 * 20 18 17 45 45 H 1.08005 * 128.00874 * 0.02562 * 22 21 20 46 46 H 1.08999 * 115.54934 * 129.40665 * 24 23 22 47 47 H 1.08998 * 117.49696 * 359.97438 * 25 24 23 48 48 H 1.08997 * 117.49815 * 145.02199 * 25 24 23 49 49 H 1.08996 * 117.50049 * 214.98522 * 26 24 23 50 50 H 1.08998 * 117.49849 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 6 4.0747 -1.3342 -2.5632 7 6 5.5996 -1.2268 -2.6274 8 7 6.0878 -1.9164 -3.8242 9 6 7.4298 -1.9526 -4.0940 10 1 8.1284 -1.4731 -3.4243 11 6 7.8924 -2.6065 -5.2277 12 7 7.0412 -3.1913 -6.0436 13 14 9.7233 -2.6565 -5.5954 14 1 10.3229 -3.8578 -4.9609 15 1 9.9316 -2.7165 -7.0644 16 1 10.3706 -1.4350 -5.0530 17 7 2.0184 -0.6906 1.1962 18 6 2.1471 -0.0182 2.3571 19 8 1.8591 1.1587 2.4115 20 6 2.6489 -0.7287 3.5878 21 6 2.7003 0.2398 4.7411 22 6 1.7087 0.4997 5.6265 23 6 2.2678 1.4688 6.4908 24 6 1.5957 2.1199 7.6723 25 6 0.0730 2.0075 7.7692 26 6 0.7201 3.3448 7.4003 27 7 3.4780 1.6874 6.0641 28 8 3.7362 1.0139 5.0935 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7516 -1.7715 -1.2055 33 1 1.6053 -0.2618 -2.1370 34 1 3.8531 0.4369 -1.3574 35 1 3.9994 -1.0728 -0.4260 36 1 3.7863 -2.3844 -2.5200 37 1 3.6400 -0.8742 -3.4507 38 1 5.8884 -0.1765 -2.6704 39 1 6.0338 -1.6869 -1.7399 40 1 5.4603 -2.3467 -4.4258 41 1 7.3643 -3.6479 -6.8360 42 1 2.2490 -1.6318 1.1526 43 1 3.6480 -1.1213 3.3986 44 1 1.9760 -1.5505 3.8326 45 1 0.7202 0.0663 5.6641 46 1 2.1620 2.1028 8.6035 47 1 -0.4428 1.4630 6.9782 48 1 -0.3627 1.9168 8.7642 49 1 0.7100 4.1333 8.1528 50 1 0.6305 3.6799 6.3670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171217552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:10 Heat of formation + Delta-G solvation = 14.773831 kcal Electronic energy + Delta-G solvation = -27577.152542 eV Core-core repulsion = 23607.172544 eV Total energy + Delta-G solvation = -3969.979998 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.95518 -40.90376 -38.51209 -38.07656 -36.83098 -34.77659 -34.69993 -33.96365 -32.94552 -31.71513 -29.23320 -28.78729 -25.92724 -25.64946 -24.08923 -23.67757 -23.00896 -22.39313 -21.98942 -21.51679 -20.62199 -19.12265 -18.87807 -18.34479 -17.85895 -17.19522 -16.71980 -16.67927 -16.39695 -16.17545 -15.53070 -15.40950 -15.28390 -15.10261 -14.76413 -14.56825 -14.46965 -14.09761 -13.95935 -13.38747 -13.12526 -13.05913 -12.93642 -12.86450 -12.85086 -12.54708 -12.44215 -12.42759 -12.24671 -12.15682 -12.05276 -11.87491 -11.79075 -11.47117 -11.38831 -11.37347 -11.09630 -10.93393 -10.70689 -10.35167 -10.05802 -9.00769 -7.96471 -5.25490 0.41305 1.17605 1.46948 1.48742 1.57401 1.61778 2.00146 2.40093 2.55486 2.68993 3.11713 3.36961 3.45092 3.61629 3.81752 3.83187 3.98745 4.04391 4.07519 4.08689 4.10379 4.17143 4.29103 4.36906 4.38817 4.44807 4.60603 4.63862 4.67249 4.67705 4.74618 4.81791 4.90166 4.91675 4.95870 5.01879 5.04908 5.05815 5.08309 5.15801 5.18308 5.29681 5.35040 5.46806 5.46963 5.55459 5.61690 6.26631 6.58070 7.26065 7.27568 7.32457 8.09430 8.32745 9.27046 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017354 B = 0.001668 C = 0.001554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.051904 B =16780.119534 C =18014.061025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 H 0.062 0.938 4 C -0.116 4.116 5 C -0.106 4.106 6 C -0.112 4.112 7 C 0.147 3.853 8 N -0.749 5.749 9 C -0.252 4.252 10 H 0.073 0.927 11 C -0.074 4.074 12 N -0.968 5.968 13 Si 0.975 3.025 14 H -0.284 1.284 15 H -0.293 1.293 16 H -0.272 1.272 17 N -0.706 5.706 18 C 0.515 3.485 19 O -0.585 6.585 20 C -0.058 4.058 21 C -0.013 4.013 22 C -0.218 4.218 23 C 0.040 3.960 24 C -0.108 4.108 25 C -0.139 4.139 26 C -0.170 4.170 27 N -0.398 5.398 28 O 0.081 5.919 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.010 0.990 39 H 0.020 0.980 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.419 0.581 43 H 0.145 0.855 44 H 0.171 0.829 45 H 0.196 0.804 46 H 0.127 0.873 47 H 0.104 0.896 48 H 0.127 0.873 49 H 0.118 0.882 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.793 4.059 27.809 34.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.040 3.960 3 H 0.080 0.920 4 C -0.154 4.154 5 C -0.144 4.144 6 C -0.150 4.150 7 C 0.020 3.980 8 N -0.391 5.391 9 C -0.384 4.384 10 H 0.091 0.909 11 C -0.267 4.267 12 N -0.619 5.619 13 Si 0.803 3.197 14 H -0.211 1.211 15 H -0.219 1.219 16 H -0.197 1.197 17 N -0.359 5.359 18 C 0.301 3.699 19 O -0.464 6.464 20 C -0.098 4.098 21 C -0.077 4.077 22 C -0.239 4.239 23 C -0.118 4.118 24 C -0.127 4.127 25 C -0.177 4.177 26 C -0.208 4.208 27 N -0.104 5.104 28 O 0.017 5.983 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.028 0.972 39 H 0.038 0.962 40 H 0.206 0.794 41 H 0.061 0.939 42 H 0.257 0.743 43 H 0.163 0.837 44 H 0.189 0.811 45 H 0.213 0.787 46 H 0.145 0.855 47 H 0.122 0.878 48 H 0.146 0.854 49 H 0.137 0.863 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.799 5.729 28.256 34.975 hybrid contribution 0.560 -0.682 -0.975 1.315 sum -19.239 5.047 27.281 33.762 Atomic orbital electron populations 1.22103 0.94300 1.03031 1.02015 1.20925 0.94458 0.96532 0.84113 0.92010 1.21838 0.94578 1.02192 0.96767 1.21436 0.95925 0.99948 0.97080 1.21599 0.93582 1.01082 0.98742 1.20878 0.94407 0.94146 0.88526 1.42621 1.04459 1.65469 1.26582 1.19665 0.85404 1.27828 1.05454 0.90926 1.25580 1.02160 1.01174 0.97764 1.69809 1.34646 1.41929 1.15518 0.85128 0.79923 0.78001 0.76636 1.21108 1.21947 1.19686 1.45946 1.66432 1.14907 1.08650 1.20723 0.77038 0.86788 0.85313 1.90754 1.51848 1.18166 1.85680 1.20363 1.08320 0.95365 0.85723 1.24186 0.87762 0.96655 0.99126 1.22631 1.02546 1.02042 0.96706 1.23146 0.90908 0.98308 0.99459 1.20270 0.94183 1.03621 0.94649 1.23161 0.90939 0.98666 1.04890 1.23082 1.02589 0.92245 1.02889 1.73801 1.19564 1.15313 1.01719 1.84778 1.37913 1.40923 1.34651 0.91039 0.90663 0.93857 0.89270 0.89963 0.93103 0.91018 0.91570 0.92692 0.97225 0.96184 0.79398 0.93901 0.74320 0.83744 0.81139 0.78679 0.85478 0.87804 0.85436 0.86330 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.48 71.98 0.68 -1.47 16 2 C 0.14 2.28 2.58 44.99 0.12 2.39 16 3 H 0.06 1.35 7.58 -2.39 -0.02 1.33 16 4 C -0.12 -1.77 4.75 30.60 0.15 -1.62 16 5 C -0.11 -2.26 5.10 30.59 0.16 -2.10 16 6 C -0.11 -3.29 5.33 30.59 0.16 -3.13 16 7 C 0.15 5.88 6.26 86.38 0.54 6.42 16 8 N -0.75 -38.87 5.60 -343.44 -1.92 -40.79 16 9 C -0.25 -14.41 9.99 84.03 0.84 -13.57 16 10 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 11 C -0.07 -4.33 5.50 84.86 0.47 -3.87 16 12 N -0.97 -59.55 13.06 21.65 0.28 -59.26 16 13 Si 0.97 46.48 29.55 68.60 2.03 48.51 16 14 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 15 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 16 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 17 N -0.71 -8.71 4.53 -442.53 -2.00 -10.71 16 18 C 0.51 8.59 7.79 87.66 0.68 9.27 16 19 O -0.58 -16.15 15.70 -3.03 -0.05 -16.19 16 20 C -0.06 -0.54 6.27 29.10 0.18 -0.36 16 21 C -0.01 -0.24 5.98 25.04 0.15 -0.09 16 22 C -0.22 -3.67 10.40 22.40 0.23 -3.44 16 23 C 0.04 0.84 6.95 43.58 0.30 1.15 16 24 C -0.11 -1.65 6.33 -11.54 -0.07 -1.73 16 25 C -0.14 -1.29 10.05 30.62 0.31 -0.98 16 26 C -0.17 -2.24 10.24 30.62 0.31 -1.93 16 27 N -0.40 -10.70 12.07 -49.56 -0.60 -11.29 16 28 O 0.08 2.06 11.20 71.69 0.80 2.86 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.38 7.75 -2.39 -0.02 1.37 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 39 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.37 20.38 7.67 -92.71 -0.71 19.67 16 41 H 0.25 14.96 8.31 -92.71 -0.77 14.18 16 42 H 0.42 2.50 8.60 -92.71 -0.80 1.70 16 43 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.17 0.10 8.14 -2.39 -0.02 0.08 16 45 H 0.20 1.96 7.63 -2.91 -0.02 1.94 16 46 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.10 0.87 7.34 -2.39 -0.02 0.85 16 48 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -81.38 419.01 3.18 -78.21 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -0.57 Total: 23.74 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 5.21 Total: -15.06 kcal Atomic # 7 Polarization: -117.82 SS G_CDS: -4.24 Total: -122.06 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.76 Total: -13.34 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -81.38 3.18 -78.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171217552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.979 kcal (2) G-P(sol) polarization free energy of solvation -81.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds