Wall clock time and date at job start Tue Mar 31 2020 18:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47544 * 2 1 4 4 C 1.53004 * 109.46864 * 120.00188 * 2 1 3 5 5 C 1.53007 * 109.46847 * 184.99976 * 4 2 1 6 6 C 1.53004 * 109.46847 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47204 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.47431 * 179.97438 * 7 6 5 9 9 C 1.36929 * 120.00255 * 180.02562 * 8 7 6 10 10 H 1.08003 * 120.00033 * 359.97438 * 9 8 7 11 11 C 1.38817 * 120.00271 * 180.02562 * 9 8 7 12 12 N 1.31616 * 119.99542 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99957 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47360 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47286 * 119.99727 * 13 11 9 16 16 H 1.48498 * 109.46893 * 239.99588 * 13 11 9 17 17 N 1.46499 * 109.47258 * 239.99749 * 2 1 3 18 18 C 1.34784 * 119.99893 * 85.00288 * 17 2 1 19 19 O 1.21283 * 119.99649 * 0.02562 * 18 17 2 20 20 C 1.50697 * 119.99774 * 179.72962 * 18 17 2 21 21 C 1.50700 * 109.46617 * 180.02562 * 20 18 17 22 22 C 1.35450 * 126.78011 * 89.70927 * 21 20 18 23 23 C 1.41387 * 103.98766 * 179.90619 * 22 21 20 24 24 C 1.50698 * 126.80347 * 180.09591 * 23 22 21 25 25 C 1.52997 * 117.49763 * 344.03559 * 24 23 22 26 26 C 1.53000 * 117.49527 * 275.37964 * 24 23 22 27 27 N 1.30180 * 106.39225 * 0.35342 * 23 22 21 28 28 O 1.20924 * 111.60536 * 359.77345 * 27 23 22 29 29 H 1.09002 * 109.47544 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47281 * 300.00191 * 1 2 3 31 31 H 1.09003 * 109.47025 * 59.99700 * 1 2 3 32 32 H 1.08998 * 109.47231 * 304.99700 * 4 2 1 33 33 H 1.08998 * 109.47079 * 65.00233 * 4 2 1 34 34 H 1.09007 * 109.46967 * 299.99587 * 5 4 2 35 35 H 1.08991 * 109.47351 * 60.00006 * 5 4 2 36 36 H 1.08998 * 109.47231 * 299.99723 * 6 5 4 37 37 H 1.09008 * 109.47178 * 59.99698 * 6 5 4 38 38 H 1.08998 * 109.47192 * 300.00226 * 7 6 5 39 39 H 1.09003 * 109.46465 * 59.99897 * 7 6 5 40 40 H 0.96998 * 119.99631 * 0.02562 * 8 7 6 41 41 H 0.97001 * 119.99242 * 180.02562 * 12 11 9 42 42 H 0.97005 * 120.00261 * 265.00500 * 17 2 1 43 43 H 1.09001 * 109.46809 * 299.99238 * 20 18 17 44 44 H 1.08993 * 109.47525 * 59.99679 * 20 18 17 45 45 H 1.07999 * 128.00489 * 359.97438 * 22 21 20 46 46 H 1.08999 * 115.55240 * 129.70500 * 24 23 22 47 47 H 1.09000 * 117.49871 * 0.02562 * 25 24 23 48 48 H 1.08999 * 117.49964 * 145.02507 * 25 24 23 49 49 H 1.08999 * 117.49718 * 214.97759 * 26 24 23 50 50 H 1.09000 * 117.50069 * 359.97317 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.6134 1.3137 6 6 4.0747 -1.3341 2.5633 7 6 5.5995 -1.2268 2.6275 8 7 6.0878 -1.9163 3.8243 9 6 7.4297 -1.9525 4.0941 10 1 8.1283 -1.4731 3.4244 11 6 7.8924 -2.6064 5.2279 12 7 7.0410 -3.1912 6.0437 13 14 9.7231 -2.6564 5.5955 14 1 10.4618 -1.9303 4.5314 15 1 9.9824 -2.0107 6.9074 16 1 10.1807 -4.0684 5.6398 17 7 2.0183 -0.6906 -1.1961 18 6 2.1471 -0.0183 -2.3572 19 8 1.8591 1.1586 -2.4115 20 6 2.6552 -0.7272 -3.5860 21 6 2.7053 0.2410 -4.7398 22 6 3.7477 1.0319 -5.0901 23 6 3.2792 1.7314 -6.2259 24 6 4.0373 2.7540 -7.0325 25 6 5.2930 3.3606 -6.4032 26 6 4.0201 4.2006 -6.5344 27 7 2.0613 1.3213 -6.4335 28 8 1.7251 0.4937 -5.6185 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6053 -0.2618 2.1370 33 1 1.7515 -1.7716 1.2055 34 1 3.9994 -1.0729 0.4259 35 1 3.8532 0.4368 1.3574 36 1 3.6401 -0.8742 3.4508 37 1 3.7862 -2.3845 2.5201 38 1 6.0339 -1.6869 1.7400 39 1 5.8882 -0.1765 2.6705 40 1 5.4603 -2.3473 4.4255 41 1 7.3643 -3.6478 6.8361 42 1 2.2490 -1.6319 -1.1526 43 1 3.6556 -1.1151 -3.3941 44 1 1.9867 -1.5521 -3.8322 45 1 4.7135 1.1092 -4.6130 46 1 4.0422 2.5929 -8.1105 47 1 5.5711 3.0196 -5.4059 48 1 6.1239 3.5989 -7.0672 49 1 4.0142 4.9912 -7.2848 50 1 3.4602 4.4127 -5.6236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171217553.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:13 Heat of formation + Delta-G solvation = 14.733141 kcal Electronic energy + Delta-G solvation = -27663.677044 eV Core-core repulsion = 23693.695282 eV Total energy + Delta-G solvation = -3969.981763 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.96082 -40.90332 -38.52070 -38.07147 -36.82659 -34.77011 -34.70323 -33.96951 -32.94062 -31.71469 -29.23724 -28.78622 -25.92450 -25.66159 -24.08540 -23.67950 -23.01665 -22.39192 -21.97864 -21.51401 -20.62181 -19.11537 -18.88279 -18.34553 -17.85945 -17.24265 -16.73207 -16.67546 -16.40244 -16.07345 -15.51074 -15.40501 -15.28977 -15.12374 -14.85723 -14.61206 -14.31131 -14.14596 -14.01060 -13.31107 -13.15531 -13.06257 -12.96262 -12.88830 -12.83839 -12.55686 -12.45047 -12.43168 -12.24621 -12.09882 -12.06488 -11.87004 -11.78393 -11.46129 -11.39345 -11.36773 -11.09923 -10.93632 -10.71213 -10.35079 -10.05963 -8.99995 -7.95942 -5.24781 0.40373 1.15977 1.47684 1.48550 1.58779 1.61692 1.99060 2.39341 2.56007 2.67963 3.10434 3.37734 3.44873 3.62036 3.80970 3.83055 3.97269 4.05570 4.07542 4.08983 4.09920 4.17757 4.28574 4.37161 4.38708 4.45207 4.61256 4.64350 4.66756 4.67711 4.73665 4.81659 4.90462 4.91488 4.96233 5.01913 5.04557 5.05875 5.07272 5.16090 5.17122 5.29961 5.34595 5.47830 5.48051 5.56582 5.61950 6.27367 6.58011 7.24833 7.27406 7.32988 8.10487 8.33044 9.27853 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011405 B = 0.001861 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.431387 B =15039.476992 C =16845.391479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.145 3.855 3 H 0.065 0.935 4 C -0.116 4.116 5 C -0.104 4.104 6 C -0.113 4.113 7 C 0.147 3.853 8 N -0.750 5.750 9 C -0.247 4.247 10 H 0.074 0.926 11 C -0.078 4.078 12 N -0.969 5.969 13 Si 0.975 3.025 14 H -0.266 1.266 15 H -0.293 1.293 16 H -0.291 1.291 17 N -0.707 5.707 18 C 0.515 3.485 19 O -0.584 6.584 20 C -0.057 4.057 21 C -0.011 4.011 22 C -0.222 4.222 23 C 0.040 3.960 24 C -0.106 4.106 25 C -0.145 4.145 26 C -0.168 4.168 27 N -0.394 5.394 28 O 0.087 5.913 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.022 0.978 39 H 0.011 0.989 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.419 0.581 43 H 0.165 0.835 44 H 0.152 0.848 45 H 0.190 0.810 46 H 0.130 0.870 47 H 0.100 0.900 48 H 0.127 0.873 49 H 0.120 0.880 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.342 6.579 -25.509 28.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.041 3.959 3 H 0.083 0.917 4 C -0.154 4.154 5 C -0.142 4.142 6 C -0.151 4.151 7 C 0.021 3.979 8 N -0.392 5.392 9 C -0.379 4.379 10 H 0.092 0.908 11 C -0.271 4.271 12 N -0.620 5.620 13 Si 0.804 3.196 14 H -0.190 1.190 15 H -0.220 1.220 16 H -0.218 1.218 17 N -0.359 5.359 18 C 0.301 3.699 19 O -0.464 6.464 20 C -0.097 4.097 21 C -0.075 4.075 22 C -0.244 4.244 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.182 4.182 26 C -0.206 4.206 27 N -0.100 5.100 28 O 0.022 5.978 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.040 0.960 39 H 0.029 0.971 40 H 0.205 0.795 41 H 0.060 0.940 42 H 0.257 0.743 43 H 0.182 0.818 44 H 0.170 0.830 45 H 0.207 0.793 46 H 0.148 0.852 47 H 0.118 0.882 48 H 0.145 0.855 49 H 0.138 0.862 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.327 7.739 -26.490 30.226 hybrid contribution 1.312 -0.508 1.243 1.877 sum -11.015 7.231 -25.247 28.479 Atomic orbital electron populations 1.22123 0.94699 1.02938 1.01919 1.20913 0.94183 0.96672 0.84146 0.91708 1.21839 0.94823 1.02089 0.96666 1.21428 0.95665 1.00054 0.97083 1.21611 0.93707 1.01030 0.98773 1.20874 0.94280 0.94206 0.88509 1.42651 1.04505 1.65431 1.26650 1.19696 0.85372 1.27518 1.05309 0.90763 1.25612 1.02210 1.01333 0.97904 1.69822 1.34585 1.42064 1.15550 0.85050 0.79941 0.77071 0.77564 1.19041 1.22034 1.21797 1.45950 1.66424 1.14906 1.08663 1.20726 0.77102 0.86786 0.85247 1.90756 1.51847 1.18231 1.85599 1.20354 1.08703 0.95798 0.84856 1.24138 0.87715 1.00719 0.94958 1.22632 1.03085 0.99721 0.98914 1.23097 0.91076 1.00258 0.97365 1.20268 1.01759 0.92025 0.98425 1.23154 0.91161 1.00992 1.02941 1.23084 1.01693 0.92540 1.03295 1.73775 1.16367 1.06614 1.13236 1.84758 1.38140 1.43917 1.30946 0.90820 0.90952 0.94149 0.90028 0.89439 0.90817 0.92881 0.92803 0.91711 0.96034 0.97069 0.79456 0.93959 0.74314 0.81794 0.83033 0.79316 0.85244 0.88170 0.85530 0.86168 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.48 71.98 0.68 -1.67 16 2 C 0.15 2.29 2.57 44.99 0.12 2.40 16 3 H 0.06 1.37 7.58 -2.39 -0.02 1.36 16 4 C -0.12 -1.74 4.75 30.60 0.15 -1.59 16 5 C -0.10 -2.10 5.10 30.60 0.16 -1.94 16 6 C -0.11 -3.22 5.33 30.60 0.16 -3.06 16 7 C 0.15 5.71 6.26 86.38 0.54 6.25 16 8 N -0.75 -38.21 5.60 -343.46 -1.92 -40.13 16 9 C -0.25 -13.89 9.99 84.04 0.84 -13.05 16 10 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 11 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 12 N -0.97 -59.21 13.06 21.65 0.28 -58.93 16 13 Si 0.97 45.88 29.55 68.60 2.03 47.91 16 14 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 15 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 16 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 17 N -0.71 -8.66 4.53 -442.53 -2.00 -10.66 16 18 C 0.51 8.54 7.79 87.65 0.68 9.22 16 19 O -0.58 -16.09 15.70 -3.04 -0.05 -16.14 16 20 C -0.06 -0.53 6.27 29.10 0.18 -0.35 16 21 C -0.01 -0.20 5.98 25.04 0.15 -0.05 16 22 C -0.22 -4.07 10.40 22.40 0.23 -3.83 16 23 C 0.04 0.87 6.95 43.58 0.30 1.17 16 24 C -0.11 -1.72 6.33 -11.54 -0.07 -1.79 16 25 C -0.15 -1.67 10.05 30.62 0.31 -1.37 16 26 C -0.17 -2.42 10.24 30.62 0.31 -2.11 16 27 N -0.39 -10.23 12.07 -49.53 -0.60 -10.82 16 28 O 0.09 2.06 11.20 71.59 0.80 2.86 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.30 7.75 -2.38 -0.02 1.29 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 37 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.37 20.11 7.67 -92.71 -0.71 19.39 16 41 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 42 H 0.42 2.46 8.60 -92.70 -0.80 1.67 16 43 H 0.16 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.15 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.19 2.50 7.61 -2.91 -0.02 2.48 16 46 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.10 1.17 7.33 -2.39 -0.02 1.15 16 48 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -79.73 418.99 3.18 -76.55 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.57 Total: 25.18 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 5.21 Total: -15.81 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -4.24 Total: -120.55 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.75 Total: -13.27 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -79.73 3.18 -76.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171217553.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.280 kcal (2) G-P(sol) polarization free energy of solvation -79.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds