Wall clock time and date at job start Tue Mar 31 2020 18:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00029 * 2 1 4 4 C 1.50705 * 109.47288 * 179.97438 * 3 2 1 5 5 C 1.38357 * 120.34631 * 89.99579 * 4 3 2 6 6 N 1.31930 * 121.07897 * 180.02562 * 5 4 3 7 7 C 1.31699 * 121.87703 * 359.97438 * 6 5 4 8 8 C 1.39515 * 120.56624 * 0.28451 * 7 6 5 9 9 C 1.47849 * 120.55866 * 179.70322 * 8 7 6 10 10 O 1.21549 * 120.00045 * 179.97438 * 9 8 7 11 11 N 1.34777 * 119.99786 * 359.97438 * 9 8 7 12 12 C 1.46496 * 120.00099 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.46832 * 325.00160 * 12 11 9 14 14 C 1.52996 * 109.46984 * 85.00160 * 12 11 9 15 15 C 1.53002 * 109.47343 * 205.00390 * 12 11 9 16 16 C 1.53000 * 109.46844 * 65.00028 * 15 12 11 17 17 C 1.53004 * 109.46925 * 180.02562 * 16 15 12 18 18 C 1.52999 * 109.47298 * 180.02562 * 17 16 15 19 19 N 1.46504 * 109.47302 * 179.97438 * 18 17 16 20 20 C 1.36930 * 119.99816 * 179.97438 * 19 18 17 21 21 H 1.07996 * 120.00239 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99682 * 179.97438 * 20 19 18 23 23 N 1.31620 * 120.00383 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00143 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46855 * 60.00083 * 24 22 20 26 26 H 1.48498 * 109.47484 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46930 * 300.00740 * 24 22 20 28 28 C 1.38353 * 120.34922 * 269.97860 * 4 3 2 29 29 H 1.09010 * 109.47175 * 300.00232 * 1 2 3 30 30 H 1.08997 * 109.47356 * 60.00046 * 1 2 3 31 31 H 1.08993 * 109.47293 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47709 * 60.00123 * 3 2 1 33 33 H 1.09000 * 109.47160 * 299.99391 * 3 2 1 34 34 H 1.08001 * 119.46195 * 359.97438 * 5 4 3 35 35 H 1.08002 * 119.71152 * 179.97438 * 7 6 5 36 36 H 0.97005 * 119.99874 * 0.02562 * 11 9 8 37 37 H 1.09006 * 109.47073 * 180.02562 * 14 12 11 38 38 H 1.09003 * 109.47463 * 300.00041 * 14 12 11 39 39 H 1.09004 * 109.47336 * 60.00308 * 14 12 11 40 40 H 1.08994 * 109.47091 * 184.99937 * 15 12 11 41 41 H 1.09001 * 109.46898 * 305.00369 * 15 12 11 42 42 H 1.09003 * 109.47187 * 299.99539 * 16 15 12 43 43 H 1.08993 * 109.47373 * 60.00225 * 16 15 12 44 44 H 1.09008 * 109.46905 * 299.99767 * 17 16 15 45 45 H 1.08998 * 109.47644 * 59.99536 * 17 16 15 46 46 H 1.09000 * 109.46952 * 300.00030 * 18 17 16 47 47 H 1.08998 * 109.47167 * 59.99226 * 18 17 16 48 48 H 0.96998 * 119.99395 * 359.97438 * 19 18 17 49 49 H 0.97000 * 120.00826 * 179.97438 * 23 22 20 50 50 H 1.07997 * 120.85391 * 0.04125 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2098 1.1310 -1.1931 6 7 5.5249 1.0264 -1.2094 7 6 6.2320 0.9706 -0.0997 8 6 5.6034 1.0152 1.1450 9 6 6.3969 0.9460 2.3907 10 8 5.8388 0.9862 3.4697 11 7 7.7390 0.8384 2.3296 12 6 8.5252 0.7692 3.5638 13 1 8.0602 1.3943 4.3262 14 6 8.5781 -0.6790 4.0543 15 6 9.9459 1.2680 3.2922 16 6 9.9033 2.7519 2.9220 17 6 11.3239 3.2505 2.6497 18 6 11.2815 4.7346 2.2801 19 7 12.6419 5.2122 2.0200 20 6 12.8533 6.5186 1.6685 21 1 12.0174 7.1971 1.5835 22 6 14.1423 6.9713 1.4226 23 7 15.1612 6.1446 1.5267 24 14 14.4310 8.7537 0.9438 25 1 13.9390 9.6429 2.0266 26 1 15.8837 8.9818 0.7371 27 1 13.6995 9.0532 -0.3134 28 6 4.2089 1.1320 1.1949 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.6687 1.1732 -2.1268 35 1 7.3072 0.8846 -0.1539 36 1 8.1843 0.8067 1.4684 37 1 9.1627 -0.7304 4.9729 38 1 7.5660 -1.0344 4.2479 39 1 9.0430 -1.3041 3.2919 40 1 10.5551 1.1338 4.1859 41 1 10.3789 0.7003 2.4686 42 1 9.2940 2.8861 2.0281 43 1 9.4702 3.3196 3.7455 44 1 11.9336 3.1163 3.5433 45 1 11.7567 2.6828 1.8260 46 1 10.6718 4.8692 1.3867 47 1 10.8489 5.3020 3.1040 48 1 13.3927 4.6029 2.0967 49 1 16.0620 6.4607 1.3545 50 1 3.6899 1.1729 2.1411 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171308717.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:38 Heat of formation + Delta-G solvation = -53.904324 kcal Electronic energy + Delta-G solvation = -27599.116644 eV Core-core repulsion = 23626.158537 eV Total energy + Delta-G solvation = -3972.958106 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.11756 -39.64704 -38.22829 -37.02389 -35.29250 -33.62402 -33.30932 -32.66752 -31.20201 -30.18871 -27.98732 -27.45540 -26.06092 -25.17938 -24.11249 -23.14300 -22.20100 -21.08699 -20.76660 -20.64365 -18.24684 -17.50181 -17.06561 -16.96121 -16.94210 -16.35507 -15.92554 -15.62912 -15.37385 -15.00042 -14.70719 -14.39336 -14.12676 -13.92799 -13.58146 -13.51618 -13.41587 -13.15705 -12.96031 -12.95347 -12.90876 -12.45231 -12.35468 -11.99370 -11.77869 -11.48738 -11.28286 -11.00421 -10.78963 -10.71314 -10.54067 -10.42971 -10.32142 -10.30250 -10.27777 -10.00054 -9.80715 -9.66559 -9.62536 -9.29538 -8.83747 -6.88643 -5.73637 -3.02036 0.19209 0.67177 2.49524 2.79274 3.18445 3.45975 3.49868 3.51283 3.58215 3.84614 4.19791 4.26463 4.37448 4.44550 4.47864 4.58012 4.65417 4.73719 4.84026 4.86118 4.89282 4.95563 5.01906 5.12463 5.17679 5.24072 5.37746 5.43243 5.53298 5.55602 5.59934 5.65071 5.68654 5.77534 5.87900 5.94389 6.03979 6.09029 6.18365 6.30654 6.33962 6.39493 6.47196 6.54125 6.90862 6.94724 7.17884 7.38377 7.72103 7.88461 8.45702 9.56378 10.15664 10.50328 11.49344 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.001866 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.914345 B =15001.619309 C =16548.007724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.107 3.893 4 C -0.153 4.153 5 C 0.144 3.856 6 N -0.485 5.485 7 C 0.143 3.857 8 C -0.188 4.188 9 C 0.566 3.434 10 O -0.535 6.535 11 N -0.715 5.715 12 C 0.141 3.859 13 H 0.091 0.909 14 C -0.164 4.164 15 C -0.128 4.128 16 C -0.115 4.115 17 C -0.126 4.126 18 C 0.152 3.848 19 N -0.734 5.734 20 C -0.240 4.240 21 H 0.069 0.931 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.005 3.995 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.400 0.600 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.383 0.617 49 H 0.255 0.745 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.785 -17.093 -1.672 32.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.030 3.970 4 C -0.155 4.155 5 C -0.013 4.013 6 N -0.192 5.192 7 C -0.015 4.015 8 C -0.194 4.194 9 C 0.352 3.648 10 O -0.412 6.412 11 N -0.367 5.367 12 C 0.037 3.963 13 H 0.109 0.891 14 C -0.222 4.222 15 C -0.166 4.166 16 C -0.153 4.153 17 C -0.163 4.163 18 C 0.024 3.976 19 N -0.378 5.378 20 C -0.371 4.371 21 H 0.087 0.913 22 C -0.211 4.211 23 N -0.584 5.584 24 Si 0.739 3.261 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.022 4.022 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.179 0.821 35 H 0.179 0.821 36 H 0.236 0.764 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.217 0.783 49 H 0.065 0.935 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -27.630 -17.087 -1.723 32.532 hybrid contribution 0.090 1.073 0.093 1.081 sum -27.540 -16.014 -1.631 31.899 Atomic orbital electron populations 1.22791 0.80456 1.03132 1.00245 1.87971 1.20045 1.27057 1.95472 1.21236 0.88473 0.85485 1.01789 1.20575 0.95970 1.04798 0.94203 1.22945 0.89915 0.90789 0.97654 1.67788 1.07860 1.12757 1.30797 1.23084 1.00421 0.91239 0.86794 1.21027 0.95151 1.08195 0.94991 1.17964 0.82244 0.76348 0.88245 1.90782 1.70897 1.49945 1.29597 1.46031 1.06058 1.74262 1.10340 1.21108 0.91640 0.97159 0.86376 0.89080 1.22183 1.02439 0.96022 1.01543 1.21956 0.94562 0.97051 1.02985 1.21530 0.97840 0.94378 1.01543 1.21727 0.95625 0.97485 1.01509 1.20649 0.88694 0.91361 0.96849 1.42372 1.02285 1.09754 1.83436 1.19212 0.92415 0.87040 1.38448 0.91296 1.24742 0.95580 0.97990 1.02777 1.69649 0.98337 1.34203 1.56170 0.86257 0.76758 0.84770 0.78351 1.21288 1.21656 1.21290 1.21626 0.92469 0.89161 0.98931 0.93781 0.93772 0.89345 0.91742 0.91586 0.82067 0.82110 0.76412 0.91329 0.92241 0.92365 0.89991 0.91211 0.92172 0.91929 0.92024 0.92075 0.96639 0.96606 0.78346 0.93503 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.98 10.69 -35.23 -0.38 -3.36 16 3 C 0.11 0.65 6.08 36.01 0.22 0.87 16 4 C -0.15 -1.23 5.52 -104.53 -0.58 -1.81 16 5 C 0.14 1.18 10.85 -17.47 -0.19 0.99 16 6 N -0.48 -4.75 10.35 -12.91 -0.13 -4.89 16 7 C 0.14 1.28 10.71 -17.13 -0.18 1.09 16 8 C -0.19 -1.84 5.89 -104.82 -0.62 -2.46 16 9 C 0.57 6.25 7.75 -12.33 -0.10 6.16 16 10 O -0.53 -7.61 16.08 5.32 0.09 -7.52 16 11 N -0.72 -6.45 4.48 -54.75 -0.25 -6.69 16 12 C 0.14 1.32 2.57 -67.93 -0.17 1.15 16 13 H 0.09 1.01 7.58 -51.93 -0.39 0.62 16 14 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16 15 C -0.13 -1.19 4.75 -26.73 -0.13 -1.32 16 16 C -0.11 -1.38 5.10 -26.73 -0.14 -1.52 16 17 C -0.13 -1.97 5.33 -26.73 -0.14 -2.11 16 18 C 0.15 3.14 6.26 -4.04 -0.03 3.11 16 19 N -0.73 -19.23 5.60 -59.91 -0.34 -19.57 16 20 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 22 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 23 N -0.93 -28.73 13.06 55.49 0.72 -28.01 16 24 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 C 0.00 0.04 9.39 -38.87 -0.37 -0.32 16 29 H 0.04 0.16 8.14 -51.92 -0.42 -0.26 16 30 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 33 H 0.07 0.28 8.09 -51.93 -0.42 -0.15 16 34 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.16 1.04 6.42 -52.49 -0.34 0.70 16 36 H 0.40 2.78 6.67 -40.82 -0.27 2.51 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.70 7.75 -51.93 -0.40 0.30 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.38 10.44 7.67 -40.82 -0.31 10.13 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 50 H 0.15 1.33 7.74 -52.49 -0.41 0.93 16 LS Contribution 417.39 15.07 6.29 6.29 Total: -1.00 -35.55 417.39 -8.64 -44.20 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -8.43 Total: 5.38 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -1.20 Total: -3.58 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 0.01 Total: -59.16 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.29 Total: -10.88 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -35.55 -8.64 -44.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171308717.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.708 kcal (2) G-P(sol) polarization free energy of solvation -35.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds