Wall clock time and date at job start Tue Mar 31 2020 18:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00029 * 2 1 4 4 C 1.50705 * 109.47288 * 179.97438 * 3 2 1 5 5 C 1.38357 * 120.34631 * 89.99579 * 4 3 2 6 6 N 1.31930 * 121.07897 * 180.02562 * 5 4 3 7 7 C 1.31699 * 121.87703 * 359.97438 * 6 5 4 8 8 C 1.39515 * 120.56624 * 0.28451 * 7 6 5 9 9 C 1.47849 * 120.55866 * 179.70322 * 8 7 6 10 10 O 1.21549 * 120.00045 * 179.97438 * 9 8 7 11 11 N 1.34777 * 119.99786 * 359.97438 * 9 8 7 12 12 C 1.46496 * 120.00099 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.46832 * 325.00160 * 12 11 9 14 14 C 1.52996 * 109.46984 * 85.00160 * 12 11 9 15 15 C 1.53002 * 109.47343 * 205.00390 * 12 11 9 16 16 C 1.53000 * 109.46844 * 65.00028 * 15 12 11 17 17 C 1.53004 * 109.46925 * 180.02562 * 16 15 12 18 18 C 1.52999 * 109.47298 * 180.02562 * 17 16 15 19 19 N 1.46504 * 109.47302 * 179.97438 * 18 17 16 20 20 C 1.36930 * 119.99816 * 179.97438 * 19 18 17 21 21 H 1.07996 * 120.00239 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99682 * 179.97438 * 20 19 18 23 23 N 1.31620 * 120.00383 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00143 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46855 * 60.00083 * 24 22 20 26 26 H 1.48498 * 109.47484 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46930 * 300.00740 * 24 22 20 28 28 C 1.38353 * 120.34922 * 269.97860 * 4 3 2 29 29 H 1.09010 * 109.47175 * 300.00232 * 1 2 3 30 30 H 1.08997 * 109.47356 * 60.00046 * 1 2 3 31 31 H 1.08993 * 109.47293 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47709 * 60.00123 * 3 2 1 33 33 H 1.09000 * 109.47160 * 299.99391 * 3 2 1 34 34 H 1.08001 * 119.46195 * 359.97438 * 5 4 3 35 35 H 1.08002 * 119.71152 * 179.97438 * 7 6 5 36 36 H 0.97005 * 119.99874 * 0.02562 * 11 9 8 37 37 H 1.09006 * 109.47073 * 180.02562 * 14 12 11 38 38 H 1.09003 * 109.47463 * 300.00041 * 14 12 11 39 39 H 1.09004 * 109.47336 * 60.00308 * 14 12 11 40 40 H 1.08994 * 109.47091 * 184.99937 * 15 12 11 41 41 H 1.09001 * 109.46898 * 305.00369 * 15 12 11 42 42 H 1.09003 * 109.47187 * 299.99539 * 16 15 12 43 43 H 1.08993 * 109.47373 * 60.00225 * 16 15 12 44 44 H 1.09008 * 109.46905 * 299.99767 * 17 16 15 45 45 H 1.08998 * 109.47644 * 59.99536 * 17 16 15 46 46 H 1.09000 * 109.46952 * 300.00030 * 18 17 16 47 47 H 1.08998 * 109.47167 * 59.99226 * 18 17 16 48 48 H 0.96998 * 119.99395 * 359.97438 * 19 18 17 49 49 H 0.97000 * 120.00826 * 179.97438 * 23 22 20 50 50 H 1.07997 * 120.85391 * 0.04125 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2098 1.1310 -1.1931 6 7 5.5249 1.0264 -1.2094 7 6 6.2320 0.9706 -0.0997 8 6 5.6034 1.0152 1.1450 9 6 6.3969 0.9460 2.3907 10 8 5.8388 0.9862 3.4697 11 7 7.7390 0.8384 2.3296 12 6 8.5252 0.7692 3.5638 13 1 8.0602 1.3943 4.3262 14 6 8.5781 -0.6790 4.0543 15 6 9.9459 1.2680 3.2922 16 6 9.9033 2.7519 2.9220 17 6 11.3239 3.2505 2.6497 18 6 11.2815 4.7346 2.2801 19 7 12.6419 5.2122 2.0200 20 6 12.8533 6.5186 1.6685 21 1 12.0174 7.1971 1.5835 22 6 14.1423 6.9713 1.4226 23 7 15.1612 6.1446 1.5267 24 14 14.4310 8.7537 0.9438 25 1 13.9390 9.6429 2.0266 26 1 15.8837 8.9818 0.7371 27 1 13.6995 9.0532 -0.3134 28 6 4.2089 1.1320 1.1949 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.6687 1.1732 -2.1268 35 1 7.3072 0.8846 -0.1539 36 1 8.1843 0.8067 1.4684 37 1 9.1627 -0.7304 4.9729 38 1 7.5660 -1.0344 4.2479 39 1 9.0430 -1.3041 3.2919 40 1 10.5551 1.1338 4.1859 41 1 10.3789 0.7003 2.4686 42 1 9.2940 2.8861 2.0281 43 1 9.4702 3.3196 3.7455 44 1 11.9336 3.1163 3.5433 45 1 11.7567 2.6828 1.8260 46 1 10.6718 4.8692 1.3867 47 1 10.8489 5.3020 3.1040 48 1 13.3927 4.6029 2.0967 49 1 16.0620 6.4607 1.3545 50 1 3.6899 1.1729 2.1411 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171308717.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:37 Heat of formation + Delta-G solvation = -78.127461 kcal Electronic energy + Delta-G solvation = -27600.167038 eV Core-core repulsion = 23626.158537 eV Total energy + Delta-G solvation = -3974.008500 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.83020 -40.41784 -38.71653 -38.05107 -36.84972 -34.86402 -34.09809 -33.67802 -32.60028 -31.35548 -28.81663 -28.43622 -26.52117 -26.11618 -25.61676 -23.84629 -23.60411 -22.09063 -21.91211 -21.51382 -19.13920 -18.94854 -18.17919 -17.66150 -17.39745 -17.11089 -16.69021 -16.47098 -16.32399 -16.15268 -16.03217 -15.43194 -15.29486 -15.16555 -14.76703 -14.57069 -14.25623 -14.16628 -14.05876 -13.92865 -13.35893 -13.25757 -13.03916 -12.92864 -12.87643 -12.83612 -12.44855 -12.38766 -12.28700 -12.19907 -11.88052 -11.81533 -11.52055 -11.40606 -11.31020 -11.01733 -10.93037 -10.74337 -10.50745 -10.34123 -10.07070 -9.01319 -7.96379 -5.25667 -0.48948 0.00227 1.46353 1.49748 1.56101 1.71976 2.03631 2.55374 2.58290 3.02956 3.24657 3.36669 3.57699 3.62314 3.69591 3.73294 3.83186 3.99746 4.03277 4.06232 4.14640 4.29052 4.35661 4.41760 4.48214 4.52584 4.56007 4.60635 4.61777 4.65547 4.77177 4.86528 4.88416 4.89192 4.93548 4.99499 5.02093 5.04402 5.12220 5.27738 5.32682 5.40384 5.43672 5.45831 5.53621 5.55670 6.14830 6.26270 6.42827 6.72680 7.09303 7.32100 8.08965 8.32549 9.26871 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.001866 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.914345 B =15001.619309 C =16548.007724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.106 3.894 4 C -0.153 4.153 5 C 0.142 3.858 6 N -0.505 5.505 7 C 0.143 3.857 8 C -0.201 4.201 9 C 0.566 3.434 10 O -0.574 6.574 11 N -0.705 5.705 12 C 0.144 3.856 13 H 0.072 0.928 14 C -0.158 4.158 15 C -0.117 4.117 16 C -0.106 4.106 17 C -0.112 4.112 18 C 0.147 3.853 19 N -0.748 5.748 20 C -0.253 4.253 21 H 0.073 0.927 22 C -0.075 4.075 23 N -0.968 5.968 24 Si 0.975 3.025 25 H -0.278 1.278 26 H -0.292 1.292 27 H -0.277 1.277 28 C -0.007 4.007 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.187 0.813 35 H 0.182 0.818 36 H 0.412 0.588 37 H 0.079 0.921 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.017 0.983 47 H 0.012 0.988 48 H 0.374 0.626 49 H 0.252 0.748 50 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.696 -17.211 -2.669 33.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.030 3.970 4 C -0.155 4.155 5 C -0.014 4.014 6 N -0.213 5.213 7 C -0.016 4.016 8 C -0.206 4.206 9 C 0.353 3.647 10 O -0.455 6.455 11 N -0.357 5.357 12 C 0.040 3.960 13 H 0.090 0.910 14 C -0.216 4.216 15 C -0.155 4.155 16 C -0.144 4.144 17 C -0.150 4.150 18 C 0.021 3.979 19 N -0.391 5.391 20 C -0.385 4.385 21 H 0.091 0.909 22 C -0.267 4.267 23 N -0.619 5.619 24 Si 0.804 3.196 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.034 4.034 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.204 0.796 35 H 0.199 0.801 36 H 0.250 0.750 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.035 0.965 47 H 0.030 0.970 48 H 0.206 0.794 49 H 0.061 0.939 50 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -28.568 -17.213 -2.734 33.465 hybrid contribution 0.286 1.092 0.397 1.197 sum -28.282 -16.120 -2.337 32.638 Atomic orbital electron populations 1.22954 0.78966 1.03881 1.01302 1.87921 1.21772 1.27944 1.95713 1.21340 0.87118 0.85300 1.03279 1.20785 0.97157 1.03923 0.93597 1.23403 0.89654 0.89639 0.98737 1.67845 1.08742 1.13591 1.31077 1.23369 1.01397 0.90570 0.86217 1.20983 0.95326 1.09505 0.94764 1.18176 0.82742 0.75688 0.88128 1.90758 1.71691 1.52010 1.30994 1.45978 1.05518 1.73236 1.10942 1.21043 0.91360 0.97551 0.86059 0.90979 1.22127 1.01764 0.95245 1.02482 1.21860 0.94580 0.95057 1.03975 1.21439 0.95274 0.96100 1.01620 1.21600 0.97958 0.94128 1.01327 1.20864 0.86007 0.94460 0.96572 1.42608 1.04107 1.08977 1.83417 1.19627 0.92723 0.88372 1.37792 0.90943 1.25597 0.95393 1.02307 1.03401 1.69804 0.98489 1.36077 1.57498 0.85189 0.76391 0.79733 0.78310 1.20438 1.21810 1.20326 1.21755 0.92639 0.89539 0.99447 0.93106 0.92308 0.88853 0.91049 0.89288 0.79572 0.80100 0.75026 0.90255 0.93878 0.91051 0.89230 0.89556 0.91642 0.92562 0.92351 0.91754 0.96514 0.96993 0.79389 0.93888 0.83867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 11.01 113.37 1.25 1.44 16 2 O -0.41 -5.95 10.69 -148.98 -1.59 -7.54 16 3 C 0.11 1.15 6.08 71.24 0.43 1.59 16 4 C -0.15 -2.32 5.52 -19.81 -0.11 -2.42 16 5 C 0.14 2.12 10.85 84.71 0.92 3.04 16 6 N -0.50 -9.28 10.35 -194.75 -2.01 -11.29 16 7 C 0.14 2.40 10.71 85.02 0.91 3.31 16 8 C -0.20 -3.88 5.89 -19.99 -0.12 -4.00 16 9 C 0.57 12.50 7.75 86.79 0.67 13.17 16 10 O -0.57 -16.82 16.08 -3.87 -0.06 -16.89 16 11 N -0.70 -11.98 4.48 -445.41 -2.00 -13.98 16 12 C 0.14 2.53 2.57 44.99 0.12 2.65 16 13 H 0.07 1.59 7.58 -2.39 -0.02 1.57 16 14 C -0.16 -2.47 9.48 71.98 0.68 -1.78 16 15 C -0.12 -1.94 4.75 30.59 0.15 -1.79 16 16 C -0.11 -2.39 5.10 30.60 0.16 -2.23 16 17 C -0.11 -3.39 5.33 30.60 0.16 -3.23 16 18 C 0.15 6.00 6.26 86.38 0.54 6.55 16 19 N -0.75 -39.28 5.60 -343.46 -1.92 -41.20 16 20 C -0.25 -14.61 9.99 84.03 0.84 -13.77 16 21 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 22 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 23 N -0.97 -59.89 13.06 21.65 0.28 -59.61 16 24 Si 0.98 46.67 29.55 68.60 2.03 48.70 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 27 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 28 C -0.01 -0.14 9.39 22.73 0.21 0.08 16 29 H 0.05 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 33 H 0.09 0.54 8.09 -2.39 -0.02 0.52 16 34 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 35 H 0.18 2.05 6.42 -2.91 -0.02 2.03 16 36 H 0.41 4.97 6.67 -92.70 -0.62 4.35 16 37 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.06 1.41 7.75 -2.39 -0.02 1.39 16 43 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 45 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.37 20.60 7.67 -92.71 -0.71 19.89 16 49 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 50 H 0.14 2.72 7.74 -2.91 -0.02 2.69 16 Total: -1.00 -76.51 417.39 1.61 -74.90 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: -0.39 Total: 28.22 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 7.28 Total: -1.30 kcal Atomic # 7 Polarization: -120.43 SS G_CDS: -5.65 Total: -126.08 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -1.65 Total: -24.43 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -76.51 1.61 -74.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171308717.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.227 kcal (2) G-P(sol) polarization free energy of solvation -76.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds