Wall clock time and date at job start Tue Mar 31 2020 19:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46996 * 2 1 4 4 C 1.53002 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.52995 * 109.47145 * 175.00074 * 4 2 1 6 6 C 1.50700 * 109.46984 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00135 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99796 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99843 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00120 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47211 * 90.00186 * 10 8 6 12 12 H 1.48494 * 109.47338 * 210.00527 * 10 8 6 13 13 H 1.48503 * 109.47124 * 330.00299 * 10 8 6 14 14 N 1.46903 * 109.47274 * 119.99728 * 2 1 3 15 15 C 1.46898 * 111.00229 * 275.00089 * 14 2 1 16 16 C 1.50696 * 109.47324 * 179.97438 * 15 14 2 17 17 C 1.38616 * 120.41298 * 94.99716 * 16 15 14 18 18 C 1.38568 * 118.51992 * 180.02562 * 17 16 15 19 19 N 1.32309 * 119.17943 * 0.02562 * 18 17 16 20 20 C 1.32304 * 120.76063 * 359.97438 * 19 18 17 21 21 O 1.35454 * 119.19813 * 179.72171 * 20 19 18 22 22 C 1.42900 * 116.99924 * 0.02562 * 21 20 19 23 23 C 1.53173 * 109.54474 * 269.82205 * 22 21 20 24 24 C 1.53100 * 109.15705 * 183.24112 * 23 22 21 25 25 O 1.42901 * 109.49095 * 57.47815 * 24 23 22 26 26 C 1.42909 * 114.09542 * 298.88923 * 25 24 23 27 27 C 1.53095 * 109.41262 * 61.15224 * 26 25 24 28 28 N 1.32282 * 120.41211 * 275.02283 * 16 15 14 29 29 H 1.09003 * 109.47096 * 300.00188 * 1 2 3 30 30 H 1.08993 * 109.47462 * 60.00051 * 1 2 3 31 31 H 1.09004 * 109.47001 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46879 * 294.99863 * 4 2 1 33 33 H 1.09002 * 109.46851 * 54.99601 * 4 2 1 34 34 H 1.09006 * 109.46856 * 300.00005 * 5 4 2 35 35 H 1.08996 * 109.47217 * 60.00055 * 5 4 2 36 36 H 0.97001 * 120.00033 * 180.02562 * 9 8 6 37 37 H 1.00898 * 110.99771 * 151.04350 * 14 2 1 38 38 H 1.08997 * 109.47088 * 60.00094 * 15 14 2 39 39 H 1.08999 * 109.47224 * 299.99817 * 15 14 2 40 40 H 1.07998 * 120.73723 * 0.02562 * 17 16 15 41 41 H 1.08004 * 120.40999 * 180.02562 * 18 17 16 42 42 H 1.08995 * 109.54387 * 30.00080 * 22 21 20 43 43 H 1.09001 * 109.52306 * 303.05517 * 23 22 21 44 44 H 1.08996 * 109.52333 * 63.24497 * 23 22 21 45 45 H 1.08999 * 109.41100 * 297.49020 * 24 23 22 46 46 H 1.09010 * 109.49402 * 177.50692 * 24 23 22 47 47 H 1.09000 * 109.48065 * 301.17257 * 26 25 24 48 48 H 1.09001 * 109.48962 * 181.14337 * 26 25 24 49 49 H 1.09001 * 109.51863 * 182.48693 * 27 26 25 50 50 H 1.08999 * 109.56895 * 62.33427 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 6 4.0670 -1.3233 -2.5445 7 1 3.3685 -1.8031 -3.2140 8 6 5.4184 -1.3603 -2.8158 9 7 5.8566 -1.9794 -3.8901 10 14 6.6265 -0.5298 -1.6582 11 1 7.0613 -1.4975 -0.6190 12 1 7.8087 -0.0646 -2.4270 13 1 5.9699 0.6328 -1.0083 14 7 2.0197 -0.6924 1.1995 15 6 2.0825 0.2226 2.3469 16 6 2.5874 -0.5217 3.5560 17 6 3.9336 -0.4941 3.8855 18 6 4.3551 -1.1929 5.0053 19 7 3.4656 -1.8614 5.7212 20 6 2.1877 -1.8670 5.3787 21 8 1.3050 -2.5667 6.1311 22 6 1.8273 -3.2628 7.2645 23 6 2.2360 -4.6801 6.8518 24 6 2.7183 -5.4440 8.0878 25 8 1.6832 -5.4591 9.0730 26 6 1.2949 -4.1623 9.5311 27 6 0.7534 -3.3476 8.3534 28 7 1.7516 -1.2100 4.3159 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.7516 -1.7715 -1.2055 33 1 1.6053 -0.2618 -2.1370 34 1 3.8531 0.4370 -1.3574 35 1 3.9994 -1.0729 -0.4260 36 1 6.8073 -2.0057 -4.0808 37 1 2.9173 -1.1205 1.0287 38 1 1.0872 0.6163 2.5526 39 1 2.7589 1.0462 2.1182 40 1 4.6381 0.0598 3.2828 41 1 5.3969 -1.1919 5.2903 42 1 2.6967 -2.7305 7.6505 43 1 1.3784 -5.1950 6.4187 44 1 3.0397 -4.6282 6.1174 45 1 3.6013 -4.9523 8.4959 46 1 2.9688 -6.4674 7.8082 47 1 2.1593 -3.6536 9.9580 48 1 0.5199 -4.2621 10.2910 49 1 0.4978 -2.3436 8.6920 50 1 -0.1355 -3.8337 7.9513 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491852.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:19 Heat of formation + Delta-G solvation = -66.310498 kcal Electronic energy + Delta-G solvation = -28697.533795 eV Core-core repulsion = 24724.037717 eV Total energy + Delta-G solvation = -3973.496078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.38628 -40.71518 -39.13821 -38.56814 -35.69794 -34.87955 -34.19137 -33.16138 -32.23031 -32.05352 -30.83100 -27.65738 -26.87295 -26.15041 -24.93957 -24.58390 -23.38004 -22.79104 -21.44300 -21.15743 -19.64347 -19.05084 -18.83440 -17.47087 -17.33955 -16.97003 -16.84745 -16.64815 -16.39240 -16.20386 -15.86983 -15.41683 -15.37457 -15.08286 -14.87663 -14.60306 -14.55994 -14.44350 -14.01556 -13.67645 -13.46264 -13.35500 -13.26939 -13.12025 -12.83458 -12.60740 -12.43844 -12.41371 -12.10873 -12.03519 -11.87673 -11.78226 -11.64935 -11.53934 -11.43793 -11.37402 -11.10892 -10.77886 -10.75060 -10.23330 -10.04765 -9.38485 -8.27813 -6.32683 -0.12668 0.03365 1.35864 1.38784 1.39686 1.50793 2.37669 2.60145 2.84471 2.95933 3.07121 3.20358 3.39851 3.57190 3.58929 3.63390 3.85662 3.95057 4.01349 4.04393 4.16208 4.17578 4.27643 4.36244 4.42754 4.43946 4.48834 4.57233 4.62617 4.66426 4.72721 4.73263 4.76396 4.89479 4.93511 4.96074 4.98814 5.00584 5.03008 5.12276 5.20192 5.42832 5.52112 5.54892 5.67695 5.72882 6.11053 6.12216 6.14923 6.29944 6.35763 6.75905 7.02068 7.31674 8.89320 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014117 B = 0.002358 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.928948 B =11870.247718 C =12678.821034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.092 3.908 3 H 0.056 0.944 4 C -0.100 4.100 5 C -0.007 4.007 6 C -0.533 4.533 7 H 0.025 0.975 8 C -0.003 4.003 9 N -0.955 5.955 10 Si 0.956 3.044 11 H -0.263 1.263 12 H -0.289 1.289 13 H -0.238 1.238 14 N -0.689 5.689 15 C 0.107 3.893 16 C 0.208 3.792 17 C -0.258 4.258 18 C 0.187 3.813 19 N -0.574 5.574 20 C 0.483 3.517 21 O -0.302 6.302 22 C 0.091 3.909 23 C -0.169 4.169 24 C 0.070 3.930 25 O -0.398 6.398 26 C 0.067 3.933 27 C -0.150 4.150 28 N -0.539 5.539 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.022 0.978 35 H 0.021 0.979 36 H 0.265 0.735 37 H 0.342 0.658 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.176 0.824 41 H 0.213 0.787 42 H 0.097 0.903 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.110 0.890 47 H 0.070 0.930 48 H 0.122 0.878 49 H 0.093 0.907 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.873 3.088 29.993 30.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.017 4.017 3 H 0.074 0.926 4 C -0.138 4.138 5 C -0.045 4.045 6 C -0.571 4.571 7 H 0.044 0.956 8 C -0.199 4.199 9 N -0.596 5.596 10 Si 0.778 3.222 11 H -0.188 1.188 12 H -0.215 1.215 13 H -0.161 1.161 14 N -0.324 5.324 15 C -0.022 4.022 16 C 0.062 3.938 17 C -0.281 4.281 18 C 0.023 3.977 19 N -0.304 5.304 20 C 0.181 3.819 21 O -0.204 6.204 22 C 0.034 3.966 23 C -0.207 4.207 24 C -0.007 4.007 25 O -0.317 6.317 26 C -0.010 4.010 27 C -0.188 4.188 28 N -0.266 5.266 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.041 0.959 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.162 0.838 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.193 0.807 41 H 0.230 0.770 42 H 0.114 0.886 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.128 0.872 47 H 0.088 0.912 48 H 0.140 0.860 49 H 0.111 0.889 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.424 2.033 30.732 31.462 hybrid contribution 2.054 0.962 -1.365 2.647 sum -4.370 2.995 29.366 29.840 Atomic orbital electron populations 1.21739 0.93760 1.01776 1.01737 1.21552 0.96155 0.95877 0.88076 0.92636 1.21544 0.95909 0.99757 0.96596 1.19525 0.94110 0.96065 0.94790 1.21511 0.92632 1.34311 1.08677 0.95634 1.26155 1.00881 0.95746 0.97107 1.70096 1.15234 1.45458 1.28798 0.85576 0.77594 0.80146 0.78847 1.18814 1.21484 1.16096 1.60519 1.34119 1.33236 1.04489 1.20970 1.02731 0.92696 0.85793 1.21681 0.89887 0.89421 0.92825 1.22998 0.97228 1.05935 1.01911 1.23649 1.00182 0.85921 0.87980 1.68041 1.01936 1.25350 1.35121 1.20827 0.85114 0.88513 0.87492 1.86129 1.33923 1.60451 1.39907 1.22678 0.98633 0.91720 0.83535 1.22627 1.02314 0.95482 1.00307 1.22602 0.89839 1.01948 0.86266 1.87938 1.56574 1.29141 1.58082 1.22739 1.00958 0.82704 0.94573 1.22384 0.98305 1.03072 0.95052 1.67336 1.41410 1.12057 1.05800 0.92021 0.91609 0.93376 0.93593 0.92259 0.95948 0.96131 0.92612 0.83780 0.88715 0.90405 0.80660 0.77048 0.88554 0.91537 0.91059 0.91259 0.87176 0.91194 0.86002 0.88879 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 9.42 71.98 0.68 -2.77 16 2 C 0.09 2.72 2.65 44.92 0.12 2.84 16 3 H 0.06 1.50 7.80 -2.39 -0.02 1.49 16 4 C -0.10 -3.80 4.74 30.59 0.15 -3.65 16 5 C -0.01 -0.33 3.87 29.85 0.12 -0.21 16 6 C -0.53 -30.51 9.66 25.60 0.25 -30.27 16 7 H 0.03 1.63 7.99 -2.91 -0.02 1.61 16 8 C 0.00 -0.16 5.47 84.66 0.46 0.30 16 9 N -0.96 -60.01 13.96 21.45 0.30 -59.71 16 10 Si 0.96 42.36 27.47 68.60 1.88 44.24 16 11 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 12 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 13 H -0.24 -9.36 6.54 99.48 0.65 -8.71 16 14 N -0.69 -20.20 6.30 -495.58 -3.12 -23.32 16 15 C 0.11 2.53 5.84 85.56 0.50 3.03 16 16 C 0.21 5.23 6.34 42.58 0.27 5.50 16 17 C -0.26 -5.01 9.83 22.44 0.22 -4.79 16 18 C 0.19 3.33 11.30 84.70 0.96 4.28 16 19 N -0.57 -13.19 8.66 -313.49 -2.72 -15.91 16 20 C 0.48 13.53 8.46 180.57 1.53 15.06 16 21 O -0.30 -8.19 9.85 -87.52 -0.86 -9.05 16 22 C 0.09 1.77 2.45 30.71 0.08 1.84 16 23 C -0.17 -3.17 5.77 30.69 0.18 -2.99 16 24 C 0.07 1.00 6.84 72.02 0.49 1.49 16 25 O -0.40 -6.54 10.77 -148.98 -1.60 -8.14 16 26 C 0.07 0.76 6.84 72.01 0.49 1.26 16 27 C -0.15 -2.24 5.79 30.68 0.18 -2.06 16 28 N -0.54 -16.24 10.40 -301.48 -3.14 -19.38 16 29 H 0.06 1.43 7.45 -2.39 -0.02 1.41 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.02 0.95 7.20 -2.38 -0.02 0.94 16 35 H 0.02 0.86 5.85 -2.39 -0.01 0.85 16 36 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 37 H 0.34 10.82 6.46 -89.70 -0.58 10.24 16 38 H 0.09 2.21 7.44 -2.39 -0.02 2.19 16 39 H 0.08 1.49 7.98 -2.39 -0.02 1.47 16 40 H 0.18 2.46 8.06 -2.91 -0.02 2.43 16 41 H 0.21 1.88 8.06 -2.91 -0.02 1.86 16 42 H 0.10 1.79 6.96 -2.39 -0.02 1.77 16 43 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.11 1.32 8.14 -2.38 -0.02 1.31 16 47 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -74.38 400.68 -2.31 -76.69 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.29 Total: 25.71 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 6.66 Total: -11.13 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -8.67 Total: -118.32 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -2.47 Total: -17.19 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.88 Total: 44.24 kcal Total: -74.38 -2.31 -76.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491852.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.378 kcal (2) G-P(sol) polarization free energy of solvation -74.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds