Wall clock time and date at job start Tue Mar 31 2020 19:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35512 * 116.99590 * 2 1 4 4 C 1.39427 * 120.47500 * 180.02562 * 3 2 1 5 5 C 1.38188 * 118.47152 * 180.02562 * 4 3 2 6 6 N 1.32494 * 119.24318 * 359.97438 * 5 4 3 7 7 C 1.32289 * 120.90855 * 0.02562 * 6 5 4 8 8 O 1.35450 * 119.16414 * 179.97438 * 7 6 5 9 9 C 1.42895 * 117.00132 * 0.02562 * 8 7 6 10 10 H 1.08997 * 109.50608 * 329.91711 * 9 8 7 11 11 C 1.53117 * 109.50745 * 89.99600 * 9 8 7 12 12 C 1.53114 * 109.16462 * 177.63341 * 11 9 8 13 13 C 1.53038 * 109.27831 * 302.34825 * 12 11 9 14 14 N 1.46839 * 109.52530 * 59.17671 * 13 12 11 15 15 C 1.46904 * 111.00255 * 174.15885 * 14 13 12 16 16 H 1.08994 * 109.47191 * 179.69054 * 15 14 13 17 17 C 1.52997 * 109.47314 * 299.69346 * 15 14 13 18 18 C 1.53004 * 109.46665 * 59.69192 * 15 14 13 19 19 C 1.53004 * 109.46798 * 174.86339 * 18 15 14 20 20 C 1.50692 * 109.46732 * 185.16592 * 19 18 15 21 21 H 1.08002 * 120.00461 * 0.02562 * 20 19 18 22 22 C 1.37883 * 119.99797 * 180.02562 * 20 19 18 23 23 N 1.31512 * 119.99887 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00150 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47175 * 59.99719 * 24 22 20 26 26 H 1.48493 * 109.47143 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46870 * 299.99773 * 24 22 20 28 28 C 1.46846 * 111.19727 * 298.26060 * 14 13 12 29 29 N 1.32314 * 121.66589 * 0.27848 * 7 6 5 30 30 H 1.08994 * 109.47068 * 300.00030 * 1 2 3 31 31 H 1.09008 * 109.47284 * 60.00057 * 1 2 3 32 32 H 1.08995 * 109.46825 * 179.97438 * 1 2 3 33 33 H 1.08000 * 120.76330 * 0.02562 * 4 3 2 34 34 H 1.07998 * 120.38131 * 180.02562 * 5 4 3 35 35 H 1.09006 * 109.52317 * 57.72824 * 11 9 8 36 36 H 1.09003 * 109.57638 * 297.57257 * 11 9 8 37 37 H 1.09008 * 109.50934 * 182.40453 * 12 11 9 38 38 H 1.09000 * 109.50256 * 62.28576 * 12 11 9 39 39 H 1.09002 * 109.46297 * 299.15840 * 13 12 11 40 40 H 1.09001 * 109.45315 * 179.18714 * 13 12 11 41 41 H 1.09002 * 109.46849 * 59.99228 * 17 15 14 42 42 H 1.08998 * 109.47584 * 179.97438 * 17 15 14 43 43 H 1.09003 * 109.46821 * 300.00226 * 17 15 14 44 44 H 1.08993 * 109.47105 * 54.86520 * 18 15 14 45 45 H 1.09003 * 109.47125 * 294.86333 * 18 15 14 46 46 H 1.09001 * 109.47026 * 65.16772 * 19 18 15 47 47 H 1.08993 * 109.46976 * 305.16685 * 19 18 15 48 48 H 0.96996 * 120.00012 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.46001 * 181.75651 * 28 14 13 50 50 H 1.08995 * 109.46145 * 301.72198 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4359 1.2921 -0.0005 5 6 4.0197 2.5446 0.0000 6 7 3.2453 3.6197 0.0005 7 6 1.9272 3.5077 0.0010 8 8 1.1694 4.6303 0.0021 9 6 1.8617 5.8804 0.0020 10 1 2.8161 5.7678 0.5162 11 6 2.1083 6.3282 -1.4413 12 6 2.7973 7.6955 -1.4326 13 6 1.9241 8.6965 -0.6726 14 7 1.7180 8.2234 0.7021 15 6 1.0004 9.2253 1.5017 16 1 0.8563 8.8472 2.5137 17 6 1.8170 10.5182 1.5517 18 6 -0.3615 9.5066 0.8637 19 6 -1.1605 10.4520 1.7631 20 6 -2.5471 10.6287 1.2000 21 1 -2.8303 10.1175 0.2918 22 6 -3.4542 11.4430 1.8444 23 7 -3.1094 12.0650 2.9506 24 14 -5.1733 11.6615 1.1469 25 1 -5.8542 10.3432 1.0865 26 1 -5.9487 12.5791 2.0197 27 1 -5.0836 12.2354 -0.2198 28 6 1.0156 6.9340 0.7202 29 7 1.3304 2.3268 0.0065 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 4.0436 0.3993 -0.0014 34 1 5.0949 2.6460 -0.0008 35 1 1.1565 6.4033 -1.9671 36 1 2.7464 5.6020 -1.9450 37 1 2.9372 8.0393 -2.4575 38 1 3.7665 7.6115 -0.9409 39 1 0.9601 8.7904 -1.1727 40 1 2.4187 9.6676 -0.6522 41 1 1.9611 10.8962 0.5396 42 1 1.2843 11.2617 2.1446 43 1 2.7872 10.3177 2.0062 44 1 -0.9072 8.5707 0.7446 45 1 -0.2168 9.9696 -0.1125 46 1 -0.6606 11.4196 1.8082 47 1 -1.2265 10.0301 2.7659 48 1 -3.7474 12.6382 3.4037 49 1 0.8502 6.6251 1.7524 50 1 0.0559 7.0362 0.2137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506572.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:02 Heat of formation + Delta-G solvation = -24.035184 kcal Electronic energy + Delta-G solvation = -29189.165659 eV Core-core repulsion = 25217.502775 eV Total energy + Delta-G solvation = -3971.662883 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.64963 -39.97106 -38.94107 -37.78443 -34.99009 -33.61788 -32.91761 -31.61944 -30.91074 -30.08100 -28.46807 -27.86319 -25.29881 -24.65056 -24.26459 -23.89801 -22.71697 -21.50302 -20.52310 -19.41399 -18.67300 -18.33147 -17.22069 -16.77093 -16.48034 -15.86480 -15.74221 -15.64992 -15.24766 -14.83096 -14.56027 -14.28075 -14.21735 -14.03853 -13.85759 -13.63530 -13.50331 -12.81874 -12.46942 -12.39401 -12.32720 -12.12489 -11.86104 -11.71100 -11.37349 -11.30693 -11.22628 -11.07229 -10.89316 -10.77261 -10.62489 -10.57637 -10.43913 -10.30951 -10.09599 -9.65195 -9.56973 -9.41771 -9.14399 -9.07541 -8.32890 -7.90043 -5.98944 -4.01180 0.74037 0.82236 2.09721 2.66441 3.33330 3.37645 3.40357 3.46631 3.73696 4.03591 4.44888 4.46924 4.49883 4.68342 4.78351 4.85161 4.89572 4.96540 4.98184 5.04481 5.21901 5.30180 5.31477 5.36366 5.48313 5.54331 5.57838 5.66287 5.70197 5.81546 5.85970 5.92968 5.99199 6.05194 6.09254 6.27139 6.31883 6.39746 6.42632 6.58292 6.62488 6.67864 6.78540 7.01748 7.05153 7.33494 7.42851 7.67887 7.80440 7.83567 8.00658 8.44411 9.05458 9.62657 11.11990 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013304 B = 0.002423 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.152904 B =11554.430915 C =13002.368551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.298 6.298 3 C 0.398 3.602 4 C -0.289 4.289 5 C 0.212 3.788 6 N -0.584 5.584 7 C 0.547 3.453 8 O -0.282 6.282 9 C 0.101 3.899 10 H 0.103 0.897 11 C -0.134 4.134 12 C -0.109 4.109 13 C 0.043 3.957 14 N -0.528 5.528 15 C 0.081 3.919 16 H 0.080 0.920 17 C -0.141 4.141 18 C -0.141 4.141 19 C 0.027 3.973 20 C -0.521 4.521 21 H 0.051 0.949 22 C 0.057 3.943 23 N -0.895 5.895 24 Si 0.890 3.110 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C 0.057 3.943 29 N -0.583 5.583 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.154 0.846 34 H 0.179 0.821 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.042 0.958 40 H 0.083 0.917 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.049 0.951 46 H 0.020 0.980 47 H 0.014 0.986 48 H 0.261 0.739 49 H 0.081 0.919 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.573 -21.018 -7.453 27.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.201 6.201 3 C 0.211 3.789 4 C -0.313 4.313 5 C 0.049 3.951 6 N -0.318 5.318 7 C 0.245 3.755 8 O -0.182 6.182 9 C 0.044 3.956 10 H 0.121 0.879 11 C -0.172 4.172 12 C -0.147 4.147 13 C -0.085 4.085 14 N -0.253 5.253 15 C -0.026 4.026 16 H 0.098 0.902 17 C -0.198 4.198 18 C -0.180 4.180 19 C -0.011 4.011 20 C -0.559 4.559 21 H 0.070 0.930 22 C -0.144 4.144 23 N -0.535 5.535 24 Si 0.718 3.282 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.203 1.203 28 C -0.071 4.071 29 N -0.326 5.326 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.172 0.828 34 H 0.196 0.804 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.101 0.899 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.038 0.962 47 H 0.033 0.967 48 H 0.070 0.930 49 H 0.100 0.900 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.174 -20.347 -7.091 26.942 hybrid contribution -1.606 -0.402 -0.724 1.806 sum 14.568 -20.749 -7.816 26.530 Atomic orbital electron populations 1.23020 0.76174 1.03501 1.03357 1.86272 1.23866 1.23463 1.86532 1.19765 0.89125 0.83948 0.86094 1.21746 0.92519 1.01279 1.15734 1.22817 1.00294 0.85732 0.86218 1.68158 1.04723 1.34838 1.24072 1.20164 0.83971 0.85605 0.85787 1.86102 1.34242 1.12292 1.85522 1.22542 0.97119 0.78463 0.97485 0.87913 1.22013 1.01472 0.97990 0.95766 1.21515 0.99469 0.93550 1.00173 1.22233 0.99051 0.98540 0.88689 1.62148 1.48739 1.02255 1.12130 1.21849 0.92681 0.91187 0.96890 0.90202 1.21869 0.99423 0.96720 1.01785 1.22276 0.94883 1.00687 1.00124 1.19055 0.93893 0.93874 0.94268 1.21229 0.97570 1.27550 1.09575 0.93024 1.25010 0.98588 0.95799 0.94978 1.69945 1.35395 1.30545 1.17572 0.86691 0.84576 0.78004 0.78938 1.20282 1.21262 1.20294 1.21963 0.95527 0.88721 1.00877 1.67011 1.41603 0.97171 1.26775 0.91582 0.91693 0.88052 0.82779 0.80362 0.91418 0.91512 0.91146 0.90878 0.93954 0.89872 0.92997 0.91056 0.92933 0.93274 0.93259 0.96219 0.96734 0.92972 0.90034 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.41 101.05 1.05 1.31 16 2 O -0.30 -2.86 10.49 -18.23 -0.19 -3.05 16 3 C 0.40 4.31 7.53 -16.71 -0.13 4.18 16 4 C -0.29 -2.35 10.12 -39.16 -0.40 -2.75 16 5 C 0.21 1.71 11.29 -17.28 -0.20 1.52 16 6 N -0.58 -6.72 8.66 -14.80 -0.13 -6.85 16 7 C 0.55 7.42 8.46 -91.28 -0.77 6.65 16 8 O -0.28 -4.14 9.85 -18.04 -0.18 -4.32 16 9 C 0.10 1.34 2.52 -26.65 -0.07 1.27 16 10 H 0.10 1.38 6.96 -51.93 -0.36 1.01 16 11 C -0.13 -1.61 5.62 -26.61 -0.15 -1.76 16 12 C -0.11 -1.21 6.09 -26.65 -0.16 -1.37 16 13 C 0.04 0.57 4.64 -3.84 -0.02 0.55 16 14 N -0.53 -7.79 4.65 -226.70 -1.05 -8.85 16 15 C 0.08 1.38 2.43 -67.71 -0.16 1.21 16 16 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 17 C -0.14 -2.22 8.74 37.16 0.32 -1.90 16 18 C -0.14 -2.88 3.89 -26.73 -0.10 -2.98 16 19 C 0.03 0.68 4.60 -27.88 -0.13 0.55 16 20 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 21 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 22 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 23 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 24 Si 0.89 21.95 29.54 -169.99 -5.02 16.92 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 C 0.06 0.85 4.67 -3.84 -0.02 0.83 16 29 N -0.58 -7.69 9.40 -14.79 -0.14 -7.83 16 30 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 31 H 0.06 0.52 8.12 -51.92 -0.42 0.10 16 32 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.18 0.72 8.06 -52.49 -0.42 0.29 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.04 0.63 6.74 -51.93 -0.35 0.28 16 40 H 0.08 1.08 6.02 -51.93 -0.31 0.76 16 41 H 0.05 0.78 6.29 -51.93 -0.33 0.45 16 42 H 0.07 1.25 6.69 -51.93 -0.35 0.90 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 1.03 6.40 -51.93 -0.33 0.70 16 45 H 0.05 1.00 6.82 -51.93 -0.35 0.65 16 46 H 0.02 0.52 6.83 -51.93 -0.35 0.17 16 47 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 49 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 50 H 0.05 0.86 6.61 -51.93 -0.34 0.51 16 LS Contribution 393.69 15.07 5.93 5.93 Total: -1.00 -32.35 393.69 -9.49 -41.84 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -8.11 Total: -1.21 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -1.34 Total: -6.32 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.58 Total: -49.80 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.37 Total: -7.36 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.35 -9.49 -41.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506572.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.803 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds