Wall clock time and date at job start Tue Mar 31 2020 19:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35512 * 116.99590 * 2 1 4 4 C 1.39427 * 120.47500 * 180.02562 * 3 2 1 5 5 C 1.38188 * 118.47152 * 180.02562 * 4 3 2 6 6 N 1.32494 * 119.24318 * 359.97438 * 5 4 3 7 7 C 1.32289 * 120.90855 * 0.02562 * 6 5 4 8 8 O 1.35450 * 119.16414 * 179.97438 * 7 6 5 9 9 C 1.42895 * 117.00132 * 0.02562 * 8 7 6 10 10 H 1.08997 * 109.50608 * 329.91711 * 9 8 7 11 11 C 1.53117 * 109.50745 * 89.99600 * 9 8 7 12 12 C 1.53114 * 109.16462 * 177.63341 * 11 9 8 13 13 C 1.53038 * 109.27831 * 302.34825 * 12 11 9 14 14 N 1.46839 * 109.52530 * 59.17671 * 13 12 11 15 15 C 1.46904 * 111.00255 * 174.15885 * 14 13 12 16 16 H 1.08994 * 109.47191 * 179.69054 * 15 14 13 17 17 C 1.52997 * 109.47314 * 299.69346 * 15 14 13 18 18 C 1.53004 * 109.46665 * 59.69192 * 15 14 13 19 19 C 1.53004 * 109.46798 * 174.86339 * 18 15 14 20 20 C 1.50692 * 109.46732 * 185.16592 * 19 18 15 21 21 H 1.08002 * 120.00461 * 0.02562 * 20 19 18 22 22 C 1.37883 * 119.99797 * 180.02562 * 20 19 18 23 23 N 1.31512 * 119.99887 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00150 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47175 * 59.99719 * 24 22 20 26 26 H 1.48493 * 109.47143 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46870 * 299.99773 * 24 22 20 28 28 C 1.46846 * 111.19727 * 298.26060 * 14 13 12 29 29 N 1.32314 * 121.66589 * 0.27848 * 7 6 5 30 30 H 1.08994 * 109.47068 * 300.00030 * 1 2 3 31 31 H 1.09008 * 109.47284 * 60.00057 * 1 2 3 32 32 H 1.08995 * 109.46825 * 179.97438 * 1 2 3 33 33 H 1.08000 * 120.76330 * 0.02562 * 4 3 2 34 34 H 1.07998 * 120.38131 * 180.02562 * 5 4 3 35 35 H 1.09006 * 109.52317 * 57.72824 * 11 9 8 36 36 H 1.09003 * 109.57638 * 297.57257 * 11 9 8 37 37 H 1.09008 * 109.50934 * 182.40453 * 12 11 9 38 38 H 1.09000 * 109.50256 * 62.28576 * 12 11 9 39 39 H 1.09002 * 109.46297 * 299.15840 * 13 12 11 40 40 H 1.09001 * 109.45315 * 179.18714 * 13 12 11 41 41 H 1.09002 * 109.46849 * 59.99228 * 17 15 14 42 42 H 1.08998 * 109.47584 * 179.97438 * 17 15 14 43 43 H 1.09003 * 109.46821 * 300.00226 * 17 15 14 44 44 H 1.08993 * 109.47105 * 54.86520 * 18 15 14 45 45 H 1.09003 * 109.47125 * 294.86333 * 18 15 14 46 46 H 1.09001 * 109.47026 * 65.16772 * 19 18 15 47 47 H 1.08993 * 109.46976 * 305.16685 * 19 18 15 48 48 H 0.96996 * 120.00012 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.46001 * 181.75651 * 28 14 13 50 50 H 1.08995 * 109.46145 * 301.72198 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4359 1.2921 -0.0005 5 6 4.0197 2.5446 0.0000 6 7 3.2453 3.6197 0.0005 7 6 1.9272 3.5077 0.0010 8 8 1.1694 4.6303 0.0021 9 6 1.8617 5.8804 0.0020 10 1 2.8161 5.7678 0.5162 11 6 2.1083 6.3282 -1.4413 12 6 2.7973 7.6955 -1.4326 13 6 1.9241 8.6965 -0.6726 14 7 1.7180 8.2234 0.7021 15 6 1.0004 9.2253 1.5017 16 1 0.8563 8.8472 2.5137 17 6 1.8170 10.5182 1.5517 18 6 -0.3615 9.5066 0.8637 19 6 -1.1605 10.4520 1.7631 20 6 -2.5471 10.6287 1.2000 21 1 -2.8303 10.1175 0.2918 22 6 -3.4542 11.4430 1.8444 23 7 -3.1094 12.0650 2.9506 24 14 -5.1733 11.6615 1.1469 25 1 -5.8542 10.3432 1.0865 26 1 -5.9487 12.5791 2.0197 27 1 -5.0836 12.2354 -0.2198 28 6 1.0156 6.9340 0.7202 29 7 1.3304 2.3268 0.0065 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 4.0436 0.3993 -0.0014 34 1 5.0949 2.6460 -0.0008 35 1 1.1565 6.4033 -1.9671 36 1 2.7464 5.6020 -1.9450 37 1 2.9372 8.0393 -2.4575 38 1 3.7665 7.6115 -0.9409 39 1 0.9601 8.7904 -1.1727 40 1 2.4187 9.6676 -0.6522 41 1 1.9611 10.8962 0.5396 42 1 1.2843 11.2617 2.1446 43 1 2.7872 10.3177 2.0062 44 1 -0.9072 8.5707 0.7446 45 1 -0.2168 9.9696 -0.1125 46 1 -0.6606 11.4196 1.8082 47 1 -1.2265 10.0301 2.7659 48 1 -3.7474 12.6382 3.4037 49 1 0.8502 6.6251 1.7524 50 1 0.0559 7.0362 0.2137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172506572.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:01 Heat of formation + Delta-G solvation = -48.322519 kcal Electronic energy + Delta-G solvation = -29190.218836 eV Core-core repulsion = 25217.502775 eV Total energy + Delta-G solvation = -3972.716061 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.46603 -41.00684 -39.89078 -38.75501 -36.41531 -34.90001 -34.38571 -32.42937 -32.40800 -31.31187 -29.93367 -28.50982 -27.10501 -25.80961 -25.10369 -24.89140 -23.76844 -23.28287 -21.70197 -20.33872 -19.87176 -19.24284 -18.61393 -18.01503 -17.58377 -17.08688 -16.56625 -16.55352 -16.41794 -16.21056 -15.83734 -15.59088 -15.33915 -15.14115 -14.92151 -14.67780 -14.56427 -14.36048 -14.04057 -13.52873 -13.43732 -13.29372 -12.98077 -12.97086 -12.84071 -12.65319 -12.52756 -12.37292 -12.29583 -12.11348 -12.05262 -11.80418 -11.59782 -11.53335 -11.35787 -11.31206 -11.24531 -11.02372 -10.55346 -10.43379 -9.84300 -9.25667 -8.21553 -6.32941 -0.03426 0.07780 1.20964 1.35915 1.38603 1.46674 1.96138 2.37867 2.67189 2.87042 3.03588 3.10353 3.51359 3.63146 3.72613 3.87167 3.97001 4.01317 4.15138 4.18485 4.28388 4.30737 4.32596 4.38884 4.44486 4.45388 4.49776 4.60098 4.70062 4.71206 4.73043 4.79558 4.87112 4.89715 5.01113 5.03791 5.08604 5.10175 5.18133 5.23836 5.36637 5.37367 5.49011 5.62627 5.72381 5.83139 5.84105 6.04088 6.12607 6.21955 6.25124 6.83265 6.97083 7.35705 8.88973 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013304 B = 0.002423 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.152904 B =11554.430915 C =13002.368551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.300 6.300 3 C 0.376 3.624 4 C -0.273 4.273 5 C 0.212 3.788 6 N -0.592 5.592 7 C 0.525 3.475 8 O -0.307 6.307 9 C 0.111 3.889 10 H 0.105 0.895 11 C -0.128 4.128 12 C -0.099 4.099 13 C 0.038 3.962 14 N -0.516 5.516 15 C 0.088 3.912 16 H 0.068 0.932 17 C -0.133 4.133 18 C -0.124 4.124 19 C 0.033 3.967 20 C -0.547 4.547 21 H 0.051 0.949 22 C 0.003 3.997 23 N -0.929 5.929 24 Si 0.960 3.040 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.267 1.267 28 C 0.059 3.941 29 N -0.611 5.611 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.133 0.867 33 H 0.188 0.812 34 H 0.225 0.775 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.026 0.974 40 H 0.094 0.906 41 H 0.062 0.938 42 H 0.048 0.952 43 H 0.074 0.926 44 H 0.037 0.963 45 H 0.051 0.949 46 H 0.004 0.996 47 H -0.013 1.013 48 H 0.264 0.736 49 H 0.071 0.929 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.486 -22.285 -8.859 30.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.204 6.204 3 C 0.190 3.810 4 C -0.296 4.296 5 C 0.051 3.949 6 N -0.327 5.327 7 C 0.222 3.778 8 O -0.208 6.208 9 C 0.055 3.945 10 H 0.123 0.877 11 C -0.166 4.166 12 C -0.137 4.137 13 C -0.089 4.089 14 N -0.241 5.241 15 C -0.020 4.020 16 H 0.087 0.913 17 C -0.191 4.191 18 C -0.163 4.163 19 C -0.004 4.004 20 C -0.585 4.585 21 H 0.069 0.931 22 C -0.195 4.195 23 N -0.569 5.569 24 Si 0.784 3.216 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.192 1.192 28 C -0.070 4.070 29 N -0.354 5.354 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.151 0.849 33 H 0.206 0.794 34 H 0.241 0.759 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.044 0.956 40 H 0.112 0.888 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.022 0.978 47 H 0.005 0.995 48 H 0.073 0.927 49 H 0.090 0.910 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 18.111 -21.649 -8.511 29.481 hybrid contribution -2.170 -0.115 -0.260 2.189 sum 15.941 -21.764 -8.770 28.368 Atomic orbital electron populations 1.23152 0.75442 1.05263 1.02311 1.86275 1.24630 1.22946 1.86536 1.20240 0.90344 0.83614 0.86792 1.22189 0.91495 1.02704 1.13171 1.23639 1.01914 0.84803 0.84537 1.68189 1.03858 1.36356 1.24254 1.20238 0.84770 0.85223 0.87551 1.86030 1.35490 1.13035 1.86222 1.22394 0.96252 0.77796 0.98098 0.87683 1.21969 1.01185 0.98803 0.94656 1.21487 0.99003 0.92022 1.01144 1.22370 0.98925 0.99953 0.87649 1.62195 1.47328 1.01486 1.13046 1.21674 0.91246 0.92630 0.96415 0.91326 1.21788 0.99816 0.95170 1.02304 1.22062 0.96217 0.98704 0.99317 1.18922 0.93710 0.94040 0.93765 1.21665 0.99152 1.27817 1.09835 0.93061 1.25923 1.03046 0.95330 0.95250 1.70070 1.36981 1.31090 1.18780 0.85582 0.79148 0.78243 0.78583 1.19590 1.20474 1.19162 1.21926 0.95149 0.89518 1.00401 1.66897 1.43045 0.97848 1.27649 0.92767 0.92611 0.84867 0.79428 0.75867 0.92614 0.90556 0.88906 0.89745 0.95611 0.88829 0.91862 0.93276 0.90678 0.94389 0.92987 0.97786 0.99452 0.92705 0.91013 0.95072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.41 113.37 1.18 1.67 16 2 O -0.30 -5.48 10.49 -88.15 -0.92 -6.41 16 3 C 0.38 7.81 7.53 84.84 0.64 8.45 16 4 C -0.27 -3.71 10.12 22.54 0.23 -3.48 16 5 C 0.21 2.79 11.29 84.58 0.95 3.74 16 6 N -0.59 -12.74 8.66 -313.72 -2.72 -15.46 16 7 C 0.52 14.28 8.46 180.58 1.53 15.81 16 8 O -0.31 -9.31 9.85 -87.47 -0.86 -10.17 16 9 C 0.11 2.95 2.52 30.65 0.08 3.03 16 10 H 0.11 2.73 6.96 -2.39 -0.02 2.71 16 11 C -0.13 -2.93 5.62 30.67 0.17 -2.76 16 12 C -0.10 -1.97 6.09 30.64 0.19 -1.78 16 13 C 0.04 0.98 4.64 86.33 0.40 1.38 16 14 N -0.52 -15.12 4.65 -871.14 -4.05 -19.17 16 15 C 0.09 3.06 2.43 44.91 0.11 3.17 16 16 H 0.07 2.53 8.09 -2.39 -0.02 2.51 16 17 C -0.13 -4.16 8.74 71.98 0.63 -3.54 16 18 C -0.12 -5.26 3.89 30.60 0.12 -5.14 16 19 C 0.03 1.78 4.60 29.85 0.14 1.92 16 20 C -0.55 -32.09 9.11 25.60 0.23 -31.86 16 21 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 22 C 0.00 0.15 5.46 84.66 0.46 0.62 16 23 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 24 Si 0.96 45.36 29.54 68.60 2.03 47.39 16 25 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 26 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 28 C 0.06 1.79 4.67 86.33 0.40 2.20 16 29 N -0.61 -16.35 9.40 -426.36 -4.01 -20.36 16 30 H 0.05 0.92 8.11 -2.39 -0.02 0.91 16 31 H 0.06 0.92 8.12 -2.38 -0.02 0.90 16 32 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.19 1.21 8.06 -2.91 -0.02 1.19 16 34 H 0.23 0.73 8.06 -2.91 -0.02 0.71 16 35 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.03 0.75 6.74 -2.39 -0.02 0.73 16 40 H 0.09 2.22 6.02 -2.39 -0.01 2.20 16 41 H 0.06 1.81 6.29 -2.39 -0.01 1.80 16 42 H 0.05 1.75 6.69 -2.39 -0.02 1.73 16 43 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.04 1.67 6.40 -2.39 -0.02 1.66 16 45 H 0.05 2.16 6.82 -2.39 -0.02 2.14 16 46 H 0.00 0.21 6.83 -2.39 -0.02 0.20 16 47 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 48 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 49 H 0.07 2.29 8.08 -2.39 -0.02 2.27 16 50 H 0.03 1.08 6.61 -2.39 -0.02 1.06 16 Total: -1.00 -72.65 393.69 -1.86 -74.51 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.93 Total: 13.20 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 7.46 Total: -6.56 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -10.49 Total: -111.95 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -1.79 Total: -16.58 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -72.65 -1.86 -74.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506572.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.191 kcal (2) G-P(sol) polarization free energy of solvation -72.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds