Wall clock time and date at job start Tue Mar 31 2020 19:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35505 * 117.00374 * 2 1 4 4 C 1.39423 * 120.48038 * 180.02562 * 3 2 1 5 5 C 1.38187 * 118.47240 * 180.02562 * 4 3 2 6 6 N 1.32484 * 119.24759 * 359.97438 * 5 4 3 7 7 C 1.32289 * 120.90483 * 0.02562 * 6 5 4 8 8 O 1.35460 * 119.16407 * 180.02562 * 7 6 5 9 9 C 1.42891 * 116.99897 * 359.97438 * 8 7 6 10 10 H 1.09001 * 109.50742 * 29.92153 * 9 8 7 11 11 C 1.53202 * 109.49293 * 269.81846 * 9 8 7 12 12 C 1.53114 * 109.12028 * 182.42340 * 11 9 8 13 13 C 1.53039 * 109.30967 * 57.63718 * 12 11 9 14 14 N 1.46842 * 109.52651 * 300.80492 * 13 12 11 15 15 C 1.46896 * 111.00316 * 185.83867 * 14 13 12 16 16 H 1.08999 * 109.47649 * 181.05657 * 15 14 13 17 17 C 1.53009 * 109.46807 * 301.05479 * 15 14 13 18 18 C 1.52998 * 109.47228 * 61.04913 * 15 14 13 19 19 C 1.53005 * 109.47063 * 62.44358 * 18 15 14 20 20 C 1.50701 * 109.47247 * 175.93311 * 19 18 15 21 21 H 1.07997 * 119.99825 * 359.97438 * 20 19 18 22 22 C 1.37873 * 119.99900 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00020 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99915 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47242 * 89.99934 * 24 22 20 26 26 H 1.48503 * 109.47171 * 209.99483 * 24 22 20 27 27 H 1.48499 * 109.47236 * 329.99793 * 24 22 20 28 28 C 1.46844 * 111.19752 * 61.73568 * 14 13 12 29 29 N 1.32309 * 121.66979 * 0.26886 * 7 6 5 30 30 H 1.09001 * 109.47226 * 300.00323 * 1 2 3 31 31 H 1.09002 * 109.46923 * 59.99740 * 1 2 3 32 32 H 1.08998 * 109.47444 * 180.02562 * 1 2 3 33 33 H 1.08001 * 120.76463 * 359.97382 * 4 3 2 34 34 H 1.08004 * 120.37554 * 180.02562 * 5 4 3 35 35 H 1.08999 * 109.57230 * 62.51602 * 11 9 8 36 36 H 1.08992 * 109.51631 * 302.30020 * 11 9 8 37 37 H 1.09010 * 109.50693 * 297.68366 * 12 11 9 38 38 H 1.09000 * 109.50590 * 177.60099 * 12 11 9 39 39 H 1.09001 * 109.45625 * 60.82149 * 13 12 11 40 40 H 1.08998 * 109.46269 * 180.79650 * 13 12 11 41 41 H 1.08999 * 109.46871 * 59.99702 * 17 15 14 42 42 H 1.09003 * 109.46672 * 179.97438 * 17 15 14 43 43 H 1.08995 * 109.47001 * 299.99649 * 17 15 14 44 44 H 1.08999 * 109.47031 * 182.44240 * 18 15 14 45 45 H 1.08996 * 109.47432 * 302.44098 * 18 15 14 46 46 H 1.08997 * 109.47133 * 295.93776 * 19 18 15 47 47 H 1.08999 * 109.46560 * 55.93162 * 19 18 15 48 48 H 0.97000 * 120.00501 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.46322 * 58.27837 * 28 14 13 50 50 H 1.09007 * 109.46362 * 178.25480 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2073 0.0000 4 6 3.4359 1.2919 -0.0005 5 6 4.0198 2.5443 0.0000 6 7 3.2457 3.6194 0.0005 7 6 1.9275 3.5075 0.0010 8 8 1.1697 4.6303 0.0010 9 6 1.8622 5.8803 0.0010 10 1 2.8175 5.7672 -0.5114 11 6 2.1058 6.3297 1.4452 12 6 2.7937 7.6976 1.4355 13 6 1.9215 8.6972 0.6726 14 7 1.7186 8.2225 -0.7020 15 6 1.0021 9.2229 -1.5042 16 1 0.8487 8.8382 -2.5125 17 6 -0.3536 9.5180 -0.8592 18 6 1.8267 10.5101 -1.5694 19 6 3.1578 10.2281 -2.2692 20 6 3.9272 11.5148 -2.4227 21 1 3.5084 12.4411 -2.0580 22 6 5.1651 11.5096 -3.0296 23 7 5.6748 10.3816 -3.4741 24 14 6.1191 13.1043 -3.2192 25 1 6.9801 13.3109 -2.0270 26 1 6.9675 13.0320 -4.4358 27 1 5.1682 14.2379 -3.3454 28 6 1.0169 6.9326 -0.7202 29 7 1.3306 2.3268 0.0063 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 4.0436 0.3990 -0.0005 34 1 5.0951 2.6456 -0.0008 35 1 2.7439 5.6047 1.9505 36 1 1.1529 6.4049 1.9689 37 1 3.7641 7.6136 0.9460 38 1 2.9317 8.0428 2.4602 39 1 0.9565 8.7911 1.1706 40 1 2.4156 9.6686 0.6520 41 1 -0.2001 9.9027 0.1491 42 1 -0.8851 10.2608 -1.4542 43 1 -0.9411 8.6011 -0.8127 44 1 1.2757 11.2666 -2.1280 45 1 2.0169 10.8713 -0.5588 46 1 3.7400 9.5255 -1.6730 47 1 2.9673 9.7990 -3.2529 48 1 6.5459 10.3778 -3.9007 49 1 0.0561 7.0348 -0.2157 50 1 0.8540 6.6223 -1.7524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506574.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:08 Heat of formation + Delta-G solvation = -20.967462 kcal Electronic energy + Delta-G solvation = -29445.952793 eV Core-core repulsion = 25474.422936 eV Total energy + Delta-G solvation = -3971.529857 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.57138 -39.90404 -38.89174 -37.72288 -34.80034 -33.52238 -32.88445 -31.53643 -30.86376 -29.69078 -28.82455 -27.83326 -25.27460 -24.66381 -24.17280 -23.74698 -22.63719 -21.33522 -20.21628 -19.39991 -18.71861 -18.34224 -17.11177 -16.71216 -16.16222 -16.02773 -15.67409 -15.59680 -15.24097 -14.76037 -14.40833 -14.39599 -14.13527 -14.03608 -13.73933 -13.58520 -13.11230 -12.78549 -12.43450 -12.36250 -12.22724 -12.16277 -11.87476 -11.74718 -11.41986 -11.30603 -11.24537 -11.02952 -10.86322 -10.67820 -10.61391 -10.43638 -10.38088 -10.15768 -10.01785 -9.57977 -9.50145 -9.19448 -8.99933 -8.88059 -8.23324 -7.82413 -5.87913 -3.89580 0.82551 0.90717 2.15885 2.71573 3.37084 3.43435 3.46419 3.55410 3.84756 4.10787 4.52900 4.54932 4.58943 4.77369 4.86083 4.88612 4.96002 4.96988 5.11940 5.12880 5.28653 5.31901 5.39783 5.43867 5.47357 5.53275 5.62325 5.64801 5.67410 5.79929 5.83513 5.93475 6.02034 6.08652 6.15246 6.28822 6.31353 6.36876 6.48525 6.51831 6.66291 6.70810 6.86050 7.09775 7.26592 7.48240 7.52544 7.85793 7.88561 8.06975 8.22231 8.56999 9.19502 9.73177 11.22839 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015029 B = 0.002504 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.658736 B =11178.079759 C =12189.400792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.298 6.298 3 C 0.396 3.604 4 C -0.288 4.288 5 C 0.214 3.786 6 N -0.579 5.579 7 C 0.546 3.454 8 O -0.286 6.286 9 C 0.097 3.903 10 H 0.108 0.892 11 C -0.131 4.131 12 C -0.112 4.112 13 C 0.048 3.952 14 N -0.511 5.511 15 C 0.085 3.915 16 H 0.079 0.921 17 C -0.186 4.186 18 C -0.104 4.104 19 C 0.031 3.969 20 C -0.520 4.520 21 H 0.050 0.950 22 C 0.057 3.943 23 N -0.893 5.893 24 Si 0.886 3.114 25 H -0.282 1.282 26 H -0.288 1.288 27 H -0.276 1.276 28 C 0.062 3.938 29 N -0.585 5.585 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.155 0.845 34 H 0.181 0.819 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.030 0.970 40 H 0.092 0.908 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.031 0.969 47 H 0.010 0.990 48 H 0.258 0.742 49 H 0.040 0.960 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.385 -19.177 10.302 23.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.202 6.202 3 C 0.209 3.791 4 C -0.312 4.312 5 C 0.052 3.948 6 N -0.313 5.313 7 C 0.244 3.756 8 O -0.186 6.186 9 C 0.041 3.959 10 H 0.126 0.874 11 C -0.169 4.169 12 C -0.150 4.150 13 C -0.080 4.080 14 N -0.236 5.236 15 C -0.023 4.023 16 H 0.097 0.903 17 C -0.245 4.245 18 C -0.142 4.142 19 C -0.006 4.006 20 C -0.558 4.558 21 H 0.069 0.931 22 C -0.144 4.144 23 N -0.532 5.532 24 Si 0.714 3.286 25 H -0.208 1.208 26 H -0.214 1.214 27 H -0.201 1.201 28 C -0.067 4.067 29 N -0.328 5.328 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.172 0.828 34 H 0.198 0.802 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.110 0.890 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.049 0.951 47 H 0.029 0.971 48 H 0.068 0.932 49 H 0.058 0.942 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.562 -18.694 10.002 23.258 hybrid contribution 0.101 0.299 0.191 0.369 sum -9.461 -18.395 10.193 23.061 Atomic orbital electron populations 1.22989 0.76411 1.03382 1.03178 1.86272 1.23685 1.23538 1.86678 1.19741 0.89128 0.83886 0.86362 1.21759 0.92484 1.01307 1.15652 1.22873 1.00461 0.85634 0.85840 1.68189 1.04656 1.34860 1.23555 1.20150 0.84065 0.85513 0.85910 1.86044 1.34456 1.12389 1.85682 1.22601 0.97554 0.78172 0.97598 0.87364 1.22005 1.01047 0.98296 0.95528 1.21529 1.00230 0.93100 1.00139 1.22228 0.98114 0.99622 0.88017 1.61921 1.48284 1.01448 1.11993 1.21876 0.90662 0.93446 0.96294 0.90264 1.22521 0.99105 1.01233 1.01662 1.21771 0.98717 0.93088 1.00590 1.18983 0.89975 0.96390 0.95260 1.21339 1.02380 0.94408 1.37723 0.93141 1.24990 0.97691 0.95793 0.95885 1.69978 1.17721 1.25367 1.40146 0.86702 0.80078 0.84345 0.77470 1.20808 1.21369 1.20072 1.21954 0.94754 0.89483 1.00495 1.66983 1.41607 0.97165 1.27044 0.91807 0.91727 0.88139 0.82765 0.80213 0.91511 0.91906 0.90097 0.91208 0.95164 0.88985 0.92602 0.92160 0.93343 0.93038 0.93267 0.95102 0.97136 0.93229 0.94164 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.41 101.05 1.05 1.31 16 2 O -0.30 -2.95 10.49 -18.21 -0.19 -3.14 16 3 C 0.40 4.52 7.53 -16.71 -0.13 4.39 16 4 C -0.29 -2.67 10.12 -39.16 -0.40 -3.06 16 5 C 0.21 2.10 11.29 -17.29 -0.20 1.90 16 6 N -0.58 -7.65 8.65 -14.80 -0.13 -7.78 16 7 C 0.55 7.83 8.46 -91.28 -0.77 7.06 16 8 O -0.29 -4.25 9.84 -18.07 -0.18 -4.43 16 9 C 0.10 1.40 2.53 -26.61 -0.07 1.33 16 10 H 0.11 1.74 6.95 -51.93 -0.36 1.38 16 11 C -0.13 -1.70 5.63 -26.57 -0.15 -1.85 16 12 C -0.11 -1.51 6.09 -26.65 -0.16 -1.67 16 13 C 0.05 0.71 4.63 -3.84 -0.02 0.69 16 14 N -0.51 -8.41 4.06 -226.69 -0.92 -9.33 16 15 C 0.08 1.43 2.38 -67.71 -0.16 1.27 16 16 H 0.08 1.39 8.08 -51.93 -0.42 0.97 16 17 C -0.19 -2.58 8.50 37.16 0.32 -2.26 16 18 C -0.10 -2.10 4.40 -26.73 -0.12 -2.21 16 19 C 0.03 0.80 4.78 -27.88 -0.13 0.66 16 20 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 21 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 22 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 23 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 24 Si 0.89 21.89 29.54 -169.99 -5.02 16.86 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 C 0.06 0.91 4.68 -3.84 -0.02 0.89 16 29 N -0.59 -7.91 9.41 -14.79 -0.14 -8.05 16 30 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 31 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 32 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.18 1.11 8.06 -52.48 -0.42 0.69 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.03 0.41 6.62 -51.93 -0.34 0.07 16 40 H 0.09 1.52 5.99 -51.93 -0.31 1.21 16 41 H 0.05 0.75 6.52 -51.93 -0.34 0.41 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.05 0.62 6.66 -51.93 -0.35 0.28 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.05 0.97 6.18 -51.93 -0.32 0.65 16 46 H 0.03 0.85 7.80 -51.93 -0.40 0.44 16 47 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 49 H 0.04 0.56 6.74 -51.93 -0.35 0.21 16 50 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 LS Contribution 395.73 15.07 5.96 5.96 Total: -1.00 -32.60 395.73 -9.46 -42.06 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -8.23 Total: -0.64 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -1.36 Total: -5.09 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.45 Total: -51.58 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.37 Total: -7.57 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.60 -9.46 -42.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506574.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.094 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds