Wall clock time and date at job start Tue Mar 31 2020 19:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35505 * 117.00374 * 2 1 4 4 C 1.39423 * 120.48038 * 180.02562 * 3 2 1 5 5 C 1.38187 * 118.47240 * 180.02562 * 4 3 2 6 6 N 1.32484 * 119.24759 * 359.97438 * 5 4 3 7 7 C 1.32289 * 120.90483 * 0.02562 * 6 5 4 8 8 O 1.35460 * 119.16407 * 180.02562 * 7 6 5 9 9 C 1.42891 * 116.99897 * 359.97438 * 8 7 6 10 10 H 1.09001 * 109.50742 * 29.92153 * 9 8 7 11 11 C 1.53202 * 109.49293 * 269.81846 * 9 8 7 12 12 C 1.53114 * 109.12028 * 182.42340 * 11 9 8 13 13 C 1.53039 * 109.30967 * 57.63718 * 12 11 9 14 14 N 1.46842 * 109.52651 * 300.80492 * 13 12 11 15 15 C 1.46896 * 111.00316 * 185.83867 * 14 13 12 16 16 H 1.08999 * 109.47649 * 181.05657 * 15 14 13 17 17 C 1.53009 * 109.46807 * 301.05479 * 15 14 13 18 18 C 1.52998 * 109.47228 * 61.04913 * 15 14 13 19 19 C 1.53005 * 109.47063 * 62.44358 * 18 15 14 20 20 C 1.50701 * 109.47247 * 175.93311 * 19 18 15 21 21 H 1.07997 * 119.99825 * 359.97438 * 20 19 18 22 22 C 1.37873 * 119.99900 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00020 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99915 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47242 * 89.99934 * 24 22 20 26 26 H 1.48503 * 109.47171 * 209.99483 * 24 22 20 27 27 H 1.48499 * 109.47236 * 329.99793 * 24 22 20 28 28 C 1.46844 * 111.19752 * 61.73568 * 14 13 12 29 29 N 1.32309 * 121.66979 * 0.26886 * 7 6 5 30 30 H 1.09001 * 109.47226 * 300.00323 * 1 2 3 31 31 H 1.09002 * 109.46923 * 59.99740 * 1 2 3 32 32 H 1.08998 * 109.47444 * 180.02562 * 1 2 3 33 33 H 1.08001 * 120.76463 * 359.97382 * 4 3 2 34 34 H 1.08004 * 120.37554 * 180.02562 * 5 4 3 35 35 H 1.08999 * 109.57230 * 62.51602 * 11 9 8 36 36 H 1.08992 * 109.51631 * 302.30020 * 11 9 8 37 37 H 1.09010 * 109.50693 * 297.68366 * 12 11 9 38 38 H 1.09000 * 109.50590 * 177.60099 * 12 11 9 39 39 H 1.09001 * 109.45625 * 60.82149 * 13 12 11 40 40 H 1.08998 * 109.46269 * 180.79650 * 13 12 11 41 41 H 1.08999 * 109.46871 * 59.99702 * 17 15 14 42 42 H 1.09003 * 109.46672 * 179.97438 * 17 15 14 43 43 H 1.08995 * 109.47001 * 299.99649 * 17 15 14 44 44 H 1.08999 * 109.47031 * 182.44240 * 18 15 14 45 45 H 1.08996 * 109.47432 * 302.44098 * 18 15 14 46 46 H 1.08997 * 109.47133 * 295.93776 * 19 18 15 47 47 H 1.08999 * 109.46560 * 55.93162 * 19 18 15 48 48 H 0.97000 * 120.00501 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.46322 * 58.27837 * 28 14 13 50 50 H 1.09007 * 109.46362 * 178.25480 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2073 0.0000 4 6 3.4359 1.2919 -0.0005 5 6 4.0198 2.5443 0.0000 6 7 3.2457 3.6194 0.0005 7 6 1.9275 3.5075 0.0010 8 8 1.1697 4.6303 0.0010 9 6 1.8622 5.8803 0.0010 10 1 2.8175 5.7672 -0.5114 11 6 2.1058 6.3297 1.4452 12 6 2.7937 7.6976 1.4355 13 6 1.9215 8.6972 0.6726 14 7 1.7186 8.2225 -0.7020 15 6 1.0021 9.2229 -1.5042 16 1 0.8487 8.8382 -2.5125 17 6 -0.3536 9.5180 -0.8592 18 6 1.8267 10.5101 -1.5694 19 6 3.1578 10.2281 -2.2692 20 6 3.9272 11.5148 -2.4227 21 1 3.5084 12.4411 -2.0580 22 6 5.1651 11.5096 -3.0296 23 7 5.6748 10.3816 -3.4741 24 14 6.1191 13.1043 -3.2192 25 1 6.9801 13.3109 -2.0270 26 1 6.9675 13.0320 -4.4358 27 1 5.1682 14.2379 -3.3454 28 6 1.0169 6.9326 -0.7202 29 7 1.3306 2.3268 0.0063 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 4.0436 0.3990 -0.0005 34 1 5.0951 2.6456 -0.0008 35 1 2.7439 5.6047 1.9505 36 1 1.1529 6.4049 1.9689 37 1 3.7641 7.6136 0.9460 38 1 2.9317 8.0428 2.4602 39 1 0.9565 8.7911 1.1706 40 1 2.4156 9.6686 0.6520 41 1 -0.2001 9.9027 0.1491 42 1 -0.8851 10.2608 -1.4542 43 1 -0.9411 8.6011 -0.8127 44 1 1.2757 11.2666 -2.1280 45 1 2.0169 10.8713 -0.5588 46 1 3.7400 9.5255 -1.6730 47 1 2.9673 9.7990 -3.2529 48 1 6.5459 10.3778 -3.9007 49 1 0.0561 7.0348 -0.2157 50 1 0.8540 6.6223 -1.7524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172506574.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:07 Heat of formation + Delta-G solvation = -44.952513 kcal Electronic energy + Delta-G solvation = -29446.992862 eV Core-core repulsion = 25474.422936 eV Total energy + Delta-G solvation = -3972.569927 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.47234 -40.98329 -39.87310 -38.73908 -36.22854 -34.87378 -34.38677 -32.52840 -32.33781 -30.95426 -30.23140 -28.49883 -27.07934 -25.75646 -25.11183 -24.87533 -23.73391 -23.08491 -21.55307 -20.42778 -19.91256 -19.26359 -18.34902 -18.03595 -17.59554 -17.24617 -16.55175 -16.48822 -16.44922 -16.24457 -15.76872 -15.55350 -15.16129 -14.97430 -14.91789 -14.63282 -14.48263 -14.27797 -14.05014 -13.58916 -13.27635 -13.23761 -13.07599 -12.96353 -12.82860 -12.72489 -12.59852 -12.34279 -12.33170 -12.07641 -11.89834 -11.73745 -11.71604 -11.45816 -11.35613 -11.14692 -11.03940 -10.89228 -10.46011 -10.43436 -9.85589 -9.07192 -8.10813 -6.21273 -0.04706 0.05671 1.18923 1.41505 1.42798 1.53440 1.95884 2.45448 2.66113 2.92091 3.05239 3.21490 3.51410 3.65239 3.73472 3.85933 4.00109 4.02405 4.16753 4.21935 4.30081 4.33746 4.35078 4.38228 4.42504 4.44406 4.51800 4.61035 4.67455 4.71422 4.75461 4.78757 4.88856 4.89654 5.01219 5.03958 5.07305 5.11157 5.19874 5.30566 5.37303 5.48454 5.61418 5.62474 5.83078 5.91792 6.05179 6.17773 6.23698 6.27770 6.37318 6.95804 6.98946 7.46811 9.00318 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015029 B = 0.002504 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.658736 B =11178.079759 C =12189.400792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.299 6.299 3 C 0.379 3.621 4 C -0.272 4.272 5 C 0.208 3.792 6 N -0.600 5.600 7 C 0.525 3.475 8 O -0.297 6.297 9 C 0.105 3.895 10 H 0.084 0.916 11 C -0.119 4.119 12 C -0.106 4.106 13 C 0.050 3.950 14 N -0.536 5.536 15 C 0.090 3.910 16 H 0.066 0.934 17 C -0.175 4.175 18 C -0.092 4.092 19 C 0.042 3.958 20 C -0.540 4.540 21 H 0.056 0.944 22 C -0.001 4.001 23 N -0.932 5.932 24 Si 0.959 3.041 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.264 1.264 28 C 0.068 3.932 29 N -0.602 5.602 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.134 0.866 33 H 0.188 0.812 34 H 0.216 0.784 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.093 0.907 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.003 0.997 47 H -0.024 1.024 48 H 0.260 0.740 49 H 0.055 0.945 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.713 -19.396 11.620 24.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.203 6.203 3 C 0.193 3.807 4 C -0.295 4.295 5 C 0.047 3.953 6 N -0.334 5.334 7 C 0.222 3.778 8 O -0.198 6.198 9 C 0.048 3.952 10 H 0.102 0.898 11 C -0.157 4.157 12 C -0.144 4.144 13 C -0.077 4.077 14 N -0.262 5.262 15 C -0.018 4.018 16 H 0.084 0.916 17 C -0.233 4.233 18 C -0.130 4.130 19 C 0.005 3.995 20 C -0.579 4.579 21 H 0.074 0.926 22 C -0.198 4.198 23 N -0.572 5.572 24 Si 0.784 3.216 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.189 1.189 28 C -0.060 4.060 29 N -0.346 5.346 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.152 0.848 33 H 0.205 0.795 34 H 0.232 0.768 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.022 0.978 47 H -0.005 1.005 48 H 0.069 0.931 49 H 0.073 0.927 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.897 -18.936 11.330 24.184 hybrid contribution 0.239 0.231 -0.252 0.416 sum -9.658 -18.705 11.078 23.789 Atomic orbital electron populations 1.23187 0.75249 1.05356 1.02462 1.86282 1.24853 1.22656 1.86508 1.20160 0.90137 0.83775 0.86639 1.22148 0.91869 1.02310 1.13153 1.23542 1.01773 0.85112 0.84869 1.68207 1.04491 1.36550 1.24183 1.20245 0.84602 0.85482 0.87480 1.85980 1.34939 1.12635 1.86273 1.22422 0.96287 0.78294 0.98217 0.89763 1.21900 1.01503 0.97717 0.94580 1.21487 0.98717 0.93272 1.00948 1.22212 0.99104 0.98933 0.87494 1.61827 1.49219 1.02088 1.13043 1.21678 0.91887 0.91861 0.96410 0.91621 1.22380 0.96954 1.02220 1.01772 1.21571 0.96220 0.95105 1.00068 1.18783 0.92503 0.94726 0.93507 1.21797 1.03015 0.95425 1.37620 0.92559 1.25931 0.98904 0.99531 0.95455 1.70127 1.18234 1.27880 1.40972 0.85546 0.78575 0.79870 0.77622 1.19838 1.21024 1.18871 1.21869 0.95206 0.88705 1.00216 1.66922 1.42527 0.97501 1.27639 0.92359 0.92604 0.84824 0.79460 0.76781 0.91388 0.90691 0.92566 0.88814 0.93093 0.90901 0.91784 0.91287 0.91956 0.92786 0.92532 0.97832 1.00521 0.93100 0.92712 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.41 113.37 1.18 1.62 16 2 O -0.30 -5.56 10.49 -88.06 -0.92 -6.49 16 3 C 0.38 8.35 7.53 84.84 0.64 8.99 16 4 C -0.27 -4.55 10.12 22.54 0.23 -4.32 16 5 C 0.21 3.81 11.29 84.58 0.95 4.77 16 6 N -0.60 -15.97 8.65 -313.71 -2.72 -18.68 16 7 C 0.52 15.32 8.46 180.58 1.53 16.85 16 8 O -0.30 -9.05 9.84 -87.58 -0.86 -9.91 16 9 C 0.10 3.08 2.53 30.67 0.08 3.16 16 10 H 0.08 2.87 6.95 -2.39 -0.02 2.85 16 11 C -0.12 -3.03 5.63 30.70 0.17 -2.86 16 12 C -0.11 -2.83 6.09 30.65 0.19 -2.65 16 13 C 0.05 1.46 4.63 86.33 0.40 1.86 16 14 N -0.54 -17.93 4.06 -871.12 -3.53 -21.47 16 15 C 0.09 3.03 2.38 44.92 0.11 3.13 16 16 H 0.07 2.37 8.08 -2.39 -0.02 2.35 16 17 C -0.17 -4.50 8.50 71.99 0.61 -3.89 16 18 C -0.09 -3.76 4.40 30.60 0.13 -3.62 16 19 C 0.04 2.25 4.78 29.85 0.14 2.40 16 20 C -0.54 -31.28 9.11 25.60 0.23 -31.05 16 21 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 22 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 23 N -0.93 -58.19 13.29 21.45 0.28 -57.91 16 24 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 25 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 26 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 27 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 28 C 0.07 2.02 4.68 86.33 0.40 2.43 16 29 N -0.60 -16.39 9.41 -426.36 -4.01 -20.40 16 30 H 0.06 0.87 8.12 -2.39 -0.02 0.85 16 31 H 0.06 0.87 8.12 -2.39 -0.02 0.85 16 32 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.22 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.05 1.29 6.62 -2.39 -0.02 1.27 16 40 H 0.07 2.41 5.99 -2.39 -0.01 2.40 16 41 H 0.06 1.56 6.52 -2.39 -0.02 1.54 16 42 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.06 1.45 6.66 -2.39 -0.02 1.44 16 44 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.06 2.22 6.18 -2.39 -0.01 2.20 16 46 H 0.00 0.19 7.80 -2.39 -0.02 0.17 16 47 H -0.02 -1.41 8.14 -2.39 -0.02 -1.43 16 48 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 49 H 0.05 1.46 6.74 -2.38 -0.02 1.45 16 50 H 0.07 2.17 8.07 -2.38 -0.02 2.15 16 Total: -1.00 -72.88 395.73 -1.35 -74.23 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.92 Total: 16.23 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 7.46 Total: -2.77 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -9.97 Total: -118.46 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -1.79 Total: -16.39 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -72.88 -1.35 -74.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506574.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.276 kcal (2) G-P(sol) polarization free energy of solvation -72.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds