Wall clock time and date at job start Tue Mar 31 2020 19:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36010 * 116.99813 * 2 1 4 4 C 1.39026 * 120.79214 * 180.02562 * 3 2 1 5 5 N 1.32307 * 119.10543 * 180.02562 * 4 3 2 6 6 C 1.32262 * 120.81880 * 359.97438 * 5 4 3 7 7 O 1.35543 * 119.12998 * 179.97438 * 6 5 4 8 8 C 1.42902 * 116.99900 * 179.97438 * 7 6 5 9 9 C 1.53124 * 109.52521 * 149.99907 * 8 7 6 10 10 C 1.53028 * 109.28071 * 177.62108 * 9 8 7 11 11 N 1.46844 * 109.52609 * 300.82158 * 10 9 8 12 12 C 1.46898 * 111.00329 * 185.83615 * 11 10 9 13 13 H 1.09002 * 109.46852 * 54.99867 * 12 11 10 14 14 C 1.53001 * 109.47501 * 295.00194 * 12 11 10 15 15 C 1.52997 * 109.47386 * 174.99954 * 12 11 10 16 16 C 1.53006 * 109.47127 * 295.00452 * 15 12 11 17 17 C 1.50698 * 109.47184 * 180.02562 * 16 15 12 18 18 H 1.08005 * 119.99819 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00046 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00192 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47309 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47510 * 119.99847 * 21 19 17 24 24 H 1.48506 * 109.47246 * 239.99882 * 21 19 17 25 25 C 1.46848 * 111.19680 * 61.73905 * 11 10 9 26 26 C 1.53037 * 109.52567 * 298.25988 * 25 11 10 27 27 N 1.32265 * 121.73561 * 0.25431 * 6 5 4 28 28 C 1.32302 * 120.81422 * 359.48741 * 27 6 5 29 29 H 1.08998 * 109.47138 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47263 * 299.99679 * 1 2 3 31 31 H 1.08995 * 109.47105 * 60.00011 * 1 2 3 32 32 H 1.07994 * 120.44738 * 359.97438 * 4 3 2 33 33 H 1.08996 * 109.52395 * 29.87255 * 8 7 6 34 34 H 1.09003 * 109.49890 * 57.67711 * 9 8 7 35 35 H 1.09001 * 109.49829 * 297.56633 * 9 8 7 36 36 H 1.08998 * 109.46495 * 180.80287 * 10 9 8 37 37 H 1.09001 * 109.45570 * 60.83255 * 10 9 8 38 38 H 1.09001 * 109.46791 * 300.00262 * 14 12 11 39 39 H 1.08996 * 109.46972 * 59.99197 * 14 12 11 40 40 H 1.08993 * 109.47331 * 179.97438 * 14 12 11 41 41 H 1.09001 * 109.47502 * 175.00609 * 15 12 11 42 42 H 1.09001 * 109.47289 * 55.00406 * 15 12 11 43 43 H 1.09001 * 109.47002 * 299.99574 * 16 15 12 44 44 H 1.08993 * 109.46955 * 60.00011 * 16 15 12 45 45 H 0.96996 * 120.00505 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.46433 * 58.27947 * 25 11 10 47 47 H 1.09006 * 109.46205 * 178.24252 * 25 11 10 48 48 H 1.08997 * 109.50227 * 299.23944 * 26 25 11 49 49 H 1.09002 * 109.50273 * 179.12248 * 26 25 11 50 50 H 1.08003 * 120.44583 * 180.25588 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 3.4336 1.3039 -0.0005 5 7 3.9993 2.4999 0.0000 6 6 3.2622 3.5981 0.0005 7 8 3.8775 4.8058 0.0016 8 6 3.0376 5.9619 0.0015 9 6 3.7473 7.1102 0.7243 10 6 2.8685 8.3618 0.6693 11 7 2.6160 8.7230 -0.7315 12 6 1.8915 9.9976 -0.8241 13 1 2.4417 10.7682 -0.2842 14 6 0.4996 9.8390 -0.2091 15 6 1.7568 10.4020 -2.2935 16 6 3.1442 10.6817 -2.8748 17 6 3.0114 11.0807 -4.3220 18 1 2.0351 11.1294 -4.7813 19 6 4.1363 11.3825 -5.0599 20 7 5.3251 11.3227 -4.5008 21 14 3.9717 11.8763 -6.8539 22 1 2.5379 11.8664 -7.2406 23 1 4.5269 13.2403 -7.0449 24 1 4.7195 10.9142 -7.7028 25 6 1.8933 7.6546 -1.4333 26 6 2.7430 6.3819 -1.4411 27 7 1.9405 3.5489 0.0055 28 6 1.3055 2.3882 0.0001 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 4.0413 0.4111 -0.0005 33 1 2.1024 5.7327 0.5124 34 1 4.7007 7.3131 0.2364 35 1 3.9216 6.8332 1.7640 36 1 3.3773 9.1851 1.1706 37 1 1.9208 8.1622 1.1693 38 1 -0.0505 9.0682 -0.7490 39 1 0.5956 9.5508 0.8377 40 1 -0.0377 10.7848 -0.2775 41 1 1.1436 11.3001 -2.3685 42 1 1.2855 9.5927 -2.8514 43 1 3.6154 11.4911 -2.3171 44 1 3.7573 9.7837 -2.7999 45 1 6.1165 11.5346 -5.0199 46 1 0.9501 7.4585 -0.9234 47 1 1.6937 7.9644 -2.4592 48 1 3.6805 6.5735 -1.9630 49 1 2.1997 5.5847 -1.9485 50 1 0.2260 2.3549 0.0000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172508048.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:50 Heat of formation + Delta-G solvation = -18.937420 kcal Electronic energy + Delta-G solvation = -29263.461682 eV Core-core repulsion = 25292.019855 eV Total energy + Delta-G solvation = -3971.441828 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.71142 -39.89204 -38.96259 -37.77351 -34.64285 -34.17087 -32.80756 -30.99084 -30.81977 -30.04173 -28.68926 -27.98160 -25.42513 -25.07220 -24.06716 -23.38374 -22.90674 -21.32013 -20.12143 -19.06753 -18.87752 -18.48033 -18.32395 -16.61686 -16.19654 -16.03515 -15.76712 -15.47020 -15.21892 -14.73945 -14.44060 -14.37854 -14.12235 -14.00433 -13.75317 -13.41224 -13.19251 -12.79064 -12.66298 -12.41957 -12.31026 -11.91594 -11.86920 -11.76692 -11.65605 -11.60078 -11.32826 -11.28849 -11.00902 -10.86539 -10.78160 -10.42516 -10.40251 -10.31530 -9.98411 -9.56129 -9.44349 -9.18704 -8.86401 -8.60639 -8.22733 -7.78494 -5.87287 -3.88822 0.60634 0.72821 2.33274 2.74656 3.36855 3.41939 3.44314 3.47813 3.68991 3.89404 4.19862 4.28540 4.44783 4.54808 4.62706 4.67555 4.77068 4.85115 4.97671 5.15519 5.23243 5.28255 5.31481 5.41383 5.45921 5.48147 5.51489 5.59881 5.70025 5.73791 5.81150 5.90432 5.99587 6.07612 6.23956 6.27081 6.30002 6.32617 6.35742 6.47648 6.66275 6.67704 6.88173 7.03523 7.28270 7.52202 7.56452 7.80283 7.86249 8.07714 8.23204 8.57746 9.20387 9.73961 11.23610 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013862 B = 0.002389 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.397094 B =11716.129663 C =12381.534897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.305 6.305 3 C -0.025 4.025 4 C 0.169 3.831 5 N -0.490 5.490 6 C 0.477 3.523 7 O -0.279 6.279 8 C 0.097 3.903 9 C -0.113 4.113 10 C 0.061 3.939 11 N -0.519 5.519 12 C 0.083 3.917 13 H 0.079 0.921 14 C -0.186 4.186 15 C -0.105 4.105 16 C 0.029 3.971 17 C -0.519 4.519 18 H 0.051 0.949 19 C 0.057 3.943 20 N -0.892 5.892 21 Si 0.885 3.115 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.059 3.941 26 C -0.131 4.131 27 N -0.533 5.533 28 C 0.110 3.890 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.184 0.816 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.031 0.969 38 H 0.054 0.946 39 H 0.047 0.953 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.010 0.990 44 H 0.032 0.968 45 H 0.258 0.742 46 H 0.031 0.969 47 H 0.093 0.907 48 H 0.085 0.915 49 H 0.065 0.935 50 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.130 -21.212 14.208 27.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.216 6.216 3 C -0.075 4.075 4 C 0.001 3.999 5 N -0.215 5.215 6 C 0.175 3.825 7 O -0.181 6.181 8 C 0.041 3.959 9 C -0.151 4.151 10 C -0.067 4.067 11 N -0.243 5.243 12 C -0.025 4.025 13 H 0.097 0.903 14 C -0.244 4.244 15 C -0.142 4.142 16 C -0.008 4.008 17 C -0.557 4.557 18 H 0.069 0.931 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.714 3.286 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.211 1.211 25 C -0.069 4.069 26 C -0.169 4.169 27 N -0.263 5.263 28 C -0.057 4.057 29 H 0.124 0.876 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.201 0.799 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.049 0.951 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.028 0.972 44 H 0.050 0.950 45 H 0.067 0.933 46 H 0.049 0.951 47 H 0.111 0.889 48 H 0.103 0.897 49 H 0.084 0.916 50 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -9.669 -20.239 13.945 26.412 hybrid contribution -1.686 -0.470 -0.685 1.880 sum -11.355 -20.709 13.260 27.086 Atomic orbital electron populations 1.23149 0.77960 1.04641 1.01556 1.86112 1.21584 1.24675 1.89242 1.20631 0.94958 0.86797 1.05133 1.22581 0.89467 0.94934 0.92945 1.67703 1.39473 0.96737 1.17555 1.20673 0.83866 0.87150 0.90807 1.86207 1.35193 1.10363 1.86291 1.22663 0.93728 0.81397 0.98146 1.21713 1.00882 0.92428 1.00069 1.21994 0.97720 0.96599 0.90401 1.62071 1.47710 1.02620 1.11909 1.21860 0.90910 0.90679 0.99086 0.90261 1.22514 0.99641 1.02110 1.00178 1.21773 1.01742 0.99226 0.91504 1.19006 0.90293 0.97353 0.94139 1.21363 0.92473 1.45323 0.96584 0.93118 1.24996 0.95509 0.95950 0.97952 1.69983 0.97595 1.49552 1.36079 0.86647 0.77962 0.78102 0.85910 1.19925 1.21161 1.21143 1.22051 0.93881 0.90147 1.00790 1.22028 1.02250 0.97287 0.95323 1.67932 1.09944 1.29680 1.18714 1.23120 1.00881 0.86065 0.95640 0.87638 0.92444 0.92334 0.79933 0.89624 0.89393 0.91109 0.89966 0.95056 0.92724 0.93402 0.92250 0.93235 0.93268 0.97192 0.94987 0.93265 0.95140 0.88903 0.89672 0.91590 0.81100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.84 101.05 0.99 1.07 16 2 O -0.30 -2.20 10.52 -19.77 -0.21 -2.40 16 3 C -0.03 -0.22 6.73 -39.00 -0.26 -0.48 16 4 C 0.17 1.64 11.27 -17.05 -0.19 1.44 16 5 N -0.49 -6.45 10.46 -14.63 -0.15 -6.60 16 6 C 0.48 6.69 8.46 -91.35 -0.77 5.91 16 7 O -0.28 -4.24 9.85 -18.32 -0.18 -4.42 16 8 C 0.10 1.34 2.43 -26.61 -0.06 1.27 16 9 C -0.11 -1.49 5.75 -26.65 -0.15 -1.65 16 10 C 0.06 0.82 5.02 -3.84 -0.02 0.80 16 11 N -0.52 -8.49 4.10 -226.70 -0.93 -9.42 16 12 C 0.08 1.38 2.35 -67.71 -0.16 1.22 16 13 H 0.08 1.37 8.08 -51.93 -0.42 0.95 16 14 C -0.19 -2.52 8.50 37.16 0.32 -2.21 16 15 C -0.10 -2.14 4.44 -26.73 -0.12 -2.25 16 16 C 0.03 0.76 4.86 -27.88 -0.14 0.62 16 17 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 18 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -27.49 13.29 55.43 0.74 -26.75 16 21 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C 0.06 0.91 4.64 -3.83 -0.02 0.89 16 26 C -0.13 -1.96 5.72 -26.65 -0.15 -2.11 16 27 N -0.53 -6.53 8.65 -14.63 -0.13 -6.66 16 28 C 0.11 1.00 10.31 -17.06 -0.18 0.82 16 29 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.15 7.71 -51.93 -0.40 -0.25 16 31 H 0.06 0.17 7.71 -51.93 -0.40 -0.23 16 32 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.09 1.14 6.95 -51.93 -0.36 0.78 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 37 H 0.03 0.39 6.73 -51.93 -0.35 0.04 16 38 H 0.05 0.73 6.52 -51.93 -0.34 0.39 16 39 H 0.05 0.58 6.65 -51.93 -0.35 0.24 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.99 6.05 -51.93 -0.31 0.68 16 43 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.03 0.90 7.75 -51.93 -0.40 0.50 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.03 0.43 6.62 -51.93 -0.34 0.08 16 47 H 0.09 1.60 5.93 -51.93 -0.31 1.29 16 48 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 49 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.17 0.99 6.46 -52.48 -0.34 0.65 16 LS Contribution 393.09 15.07 5.92 5.92 Total: -1.00 -33.73 393.09 -9.37 -43.10 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -8.09 Total: -1.58 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -1.32 Total: -8.31 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -0.47 Total: -49.43 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.39 Total: -6.82 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.73 -9.37 -43.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172508048.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.160 kcal (2) G-P(sol) polarization free energy of solvation -33.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds