Wall clock time and date at job start Tue Mar 31 2020 19:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36010 * 116.99813 * 2 1 4 4 C 1.39026 * 120.79214 * 180.02562 * 3 2 1 5 5 N 1.32307 * 119.10543 * 180.02562 * 4 3 2 6 6 C 1.32262 * 120.81880 * 359.97438 * 5 4 3 7 7 O 1.35543 * 119.12998 * 179.97438 * 6 5 4 8 8 C 1.42902 * 116.99900 * 179.97438 * 7 6 5 9 9 C 1.53124 * 109.52521 * 149.99907 * 8 7 6 10 10 C 1.53028 * 109.28071 * 177.62108 * 9 8 7 11 11 N 1.46844 * 109.52609 * 300.82158 * 10 9 8 12 12 C 1.46898 * 111.00329 * 185.83615 * 11 10 9 13 13 H 1.09002 * 109.46852 * 54.99867 * 12 11 10 14 14 C 1.53001 * 109.47501 * 295.00194 * 12 11 10 15 15 C 1.52997 * 109.47386 * 174.99954 * 12 11 10 16 16 C 1.53006 * 109.47127 * 295.00452 * 15 12 11 17 17 C 1.50698 * 109.47184 * 180.02562 * 16 15 12 18 18 H 1.08005 * 119.99819 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00046 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00192 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47309 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47510 * 119.99847 * 21 19 17 24 24 H 1.48506 * 109.47246 * 239.99882 * 21 19 17 25 25 C 1.46848 * 111.19680 * 61.73905 * 11 10 9 26 26 C 1.53037 * 109.52567 * 298.25988 * 25 11 10 27 27 N 1.32265 * 121.73561 * 0.25431 * 6 5 4 28 28 C 1.32302 * 120.81422 * 359.48741 * 27 6 5 29 29 H 1.08998 * 109.47138 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47263 * 299.99679 * 1 2 3 31 31 H 1.08995 * 109.47105 * 60.00011 * 1 2 3 32 32 H 1.07994 * 120.44738 * 359.97438 * 4 3 2 33 33 H 1.08996 * 109.52395 * 29.87255 * 8 7 6 34 34 H 1.09003 * 109.49890 * 57.67711 * 9 8 7 35 35 H 1.09001 * 109.49829 * 297.56633 * 9 8 7 36 36 H 1.08998 * 109.46495 * 180.80287 * 10 9 8 37 37 H 1.09001 * 109.45570 * 60.83255 * 10 9 8 38 38 H 1.09001 * 109.46791 * 300.00262 * 14 12 11 39 39 H 1.08996 * 109.46972 * 59.99197 * 14 12 11 40 40 H 1.08993 * 109.47331 * 179.97438 * 14 12 11 41 41 H 1.09001 * 109.47502 * 175.00609 * 15 12 11 42 42 H 1.09001 * 109.47289 * 55.00406 * 15 12 11 43 43 H 1.09001 * 109.47002 * 299.99574 * 16 15 12 44 44 H 1.08993 * 109.46955 * 60.00011 * 16 15 12 45 45 H 0.96996 * 120.00505 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.46433 * 58.27947 * 25 11 10 47 47 H 1.09006 * 109.46205 * 178.24252 * 25 11 10 48 48 H 1.08997 * 109.50227 * 299.23944 * 26 25 11 49 49 H 1.09002 * 109.50273 * 179.12248 * 26 25 11 50 50 H 1.08003 * 120.44583 * 180.25588 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 3.4336 1.3039 -0.0005 5 7 3.9993 2.4999 0.0000 6 6 3.2622 3.5981 0.0005 7 8 3.8775 4.8058 0.0016 8 6 3.0376 5.9619 0.0015 9 6 3.7473 7.1102 0.7243 10 6 2.8685 8.3618 0.6693 11 7 2.6160 8.7230 -0.7315 12 6 1.8915 9.9976 -0.8241 13 1 2.4417 10.7682 -0.2842 14 6 0.4996 9.8390 -0.2091 15 6 1.7568 10.4020 -2.2935 16 6 3.1442 10.6817 -2.8748 17 6 3.0114 11.0807 -4.3220 18 1 2.0351 11.1294 -4.7813 19 6 4.1363 11.3825 -5.0599 20 7 5.3251 11.3227 -4.5008 21 14 3.9717 11.8763 -6.8539 22 1 2.5379 11.8664 -7.2406 23 1 4.5269 13.2403 -7.0449 24 1 4.7195 10.9142 -7.7028 25 6 1.8933 7.6546 -1.4333 26 6 2.7430 6.3819 -1.4411 27 7 1.9405 3.5489 0.0055 28 6 1.3055 2.3882 0.0001 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 4.0413 0.4111 -0.0005 33 1 2.1024 5.7327 0.5124 34 1 4.7007 7.3131 0.2364 35 1 3.9216 6.8332 1.7640 36 1 3.3773 9.1851 1.1706 37 1 1.9208 8.1622 1.1693 38 1 -0.0505 9.0682 -0.7490 39 1 0.5956 9.5508 0.8377 40 1 -0.0377 10.7848 -0.2775 41 1 1.1436 11.3001 -2.3685 42 1 1.2855 9.5927 -2.8514 43 1 3.6154 11.4911 -2.3171 44 1 3.7573 9.7837 -2.7999 45 1 6.1165 11.5346 -5.0199 46 1 0.9501 7.4585 -0.9234 47 1 1.6937 7.9644 -2.4592 48 1 3.6805 6.5735 -1.9630 49 1 2.1997 5.5847 -1.9485 50 1 0.2260 2.3549 0.0000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172508048.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:49 Heat of formation + Delta-G solvation = -43.552695 kcal Electronic energy + Delta-G solvation = -29264.529081 eV Core-core repulsion = 25292.019855 eV Total energy + Delta-G solvation = -3972.509226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.52064 -40.92418 -39.84320 -38.72563 -36.13607 -35.00944 -34.72672 -32.32472 -31.88236 -31.30584 -30.00819 -28.42770 -27.08753 -26.14151 -25.01769 -24.48411 -24.00652 -23.04770 -21.46350 -20.25112 -19.89805 -19.17603 -19.07478 -18.36594 -17.40111 -17.27866 -16.56572 -16.47218 -16.34464 -15.98933 -15.81108 -15.41839 -15.17387 -15.01258 -14.68609 -14.58637 -14.49318 -14.15591 -13.95496 -13.46197 -13.36203 -13.29303 -13.19452 -13.04128 -12.85750 -12.81756 -12.39761 -12.35737 -12.33549 -12.23513 -12.17661 -11.99383 -11.71329 -11.58949 -11.48904 -11.26497 -11.06097 -10.87059 -10.48847 -10.27752 -9.36325 -9.00120 -8.13414 -6.23806 -0.13516 -0.07641 1.38785 1.39383 1.44961 1.52145 2.18356 2.43087 2.59424 2.90110 2.99274 3.18986 3.22441 3.53683 3.68039 3.70749 3.80220 4.02094 4.06559 4.21386 4.27216 4.31679 4.36349 4.40574 4.41721 4.48109 4.52171 4.63788 4.65718 4.73768 4.76979 4.79413 4.82808 4.91477 4.92994 5.03311 5.09188 5.09943 5.15541 5.24445 5.34623 5.48335 5.55668 5.60401 5.90181 5.95926 6.03425 6.21843 6.29120 6.34029 6.36546 6.94647 6.96819 7.44309 8.97961 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013862 B = 0.002389 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.397094 B =11716.129663 C =12381.534897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.310 6.310 3 C -0.008 4.008 4 C 0.158 3.842 5 N -0.518 5.518 6 C 0.450 3.550 7 O -0.302 6.302 8 C 0.107 3.893 9 C -0.109 4.109 10 C 0.065 3.935 11 N -0.549 5.549 12 C 0.088 3.912 13 H 0.070 0.930 14 C -0.174 4.174 15 C -0.094 4.094 16 C 0.040 3.960 17 C -0.539 4.539 18 H 0.055 0.945 19 C -0.003 4.003 20 N -0.932 5.932 21 Si 0.959 3.041 22 H -0.262 1.262 23 H -0.278 1.278 24 H -0.281 1.281 25 C 0.067 3.933 26 C -0.123 4.123 27 N -0.543 5.543 28 C 0.105 3.895 29 H 0.126 0.874 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.210 0.790 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.051 0.949 43 H -0.021 1.021 44 H 0.001 0.999 45 H 0.260 0.740 46 H 0.054 0.946 47 H 0.068 0.932 48 H 0.050 0.950 49 H 0.068 0.932 50 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.928 -22.635 14.813 30.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.221 6.221 3 C -0.059 4.059 4 C -0.009 4.009 5 N -0.244 5.244 6 C 0.148 3.852 7 O -0.205 6.205 8 C 0.051 3.949 9 C -0.147 4.147 10 C -0.063 4.063 11 N -0.273 5.273 12 C -0.020 4.020 13 H 0.089 0.911 14 C -0.233 4.233 15 C -0.132 4.132 16 C 0.002 3.998 17 C -0.578 4.578 18 H 0.074 0.926 19 C -0.200 4.200 20 N -0.573 5.573 21 Si 0.784 3.216 22 H -0.186 1.186 23 H -0.204 1.204 24 H -0.207 1.207 25 C -0.061 4.061 26 C -0.162 4.162 27 N -0.273 5.273 28 C -0.061 4.061 29 H 0.144 0.856 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.227 0.773 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.069 0.931 43 H -0.002 1.002 44 H 0.019 0.981 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.069 0.931 49 H 0.087 0.913 50 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -12.500 -21.693 14.559 28.962 hybrid contribution -0.855 -0.207 -0.870 1.238 sum -13.355 -21.900 13.688 29.075 Atomic orbital electron populations 1.23507 0.75784 1.06470 1.02686 1.86129 1.23770 1.23620 1.88609 1.20611 0.94726 0.87419 1.03099 1.23050 0.90644 0.94635 0.92549 1.67654 1.40598 0.97586 1.18519 1.20760 0.84708 0.86843 0.92933 1.86148 1.36159 1.11218 1.86970 1.22535 0.94125 0.81367 0.96899 1.21688 0.99609 0.92415 1.00998 1.22023 0.98806 0.96656 0.88774 1.61968 1.48524 1.02780 1.14077 1.21659 0.93191 0.90746 0.96362 0.91130 1.22373 0.96999 1.02818 1.01064 1.21588 0.97921 0.99535 0.94146 1.18811 0.93063 0.94576 0.93312 1.21824 0.92773 1.45166 0.97997 0.92638 1.25953 0.95097 0.95872 1.03060 1.70130 0.98489 1.50547 1.38121 0.85488 0.78558 0.77817 0.79702 1.18565 1.20395 1.20702 1.21922 0.94758 0.89781 0.99593 1.21915 1.00524 0.97368 0.96360 1.67915 1.09145 1.31133 1.19084 1.23696 1.02366 0.85308 0.94680 0.85635 0.91070 0.91367 0.77341 0.88449 0.91955 0.88921 0.89605 0.92667 0.92261 0.91289 0.91456 0.92831 0.93054 1.00227 0.98086 0.93098 0.92797 0.91396 0.93104 0.91290 0.77711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.84 113.37 1.12 1.15 16 2 O -0.31 -3.63 10.52 -93.66 -0.99 -4.61 16 3 C -0.01 -0.12 6.73 22.65 0.15 0.03 16 4 C 0.16 2.92 11.27 84.81 0.96 3.87 16 5 N -0.52 -13.76 10.46 -313.12 -3.27 -17.03 16 6 C 0.45 12.71 8.46 180.60 1.53 14.24 16 7 O -0.30 -9.50 9.85 -88.48 -0.87 -10.37 16 8 C 0.11 2.97 2.43 30.67 0.07 3.04 16 9 C -0.11 -2.90 5.75 30.65 0.18 -2.72 16 10 C 0.06 1.69 5.02 86.32 0.43 2.12 16 11 N -0.55 -18.13 4.10 -871.14 -3.57 -21.70 16 12 C 0.09 2.92 2.35 44.92 0.11 3.03 16 13 H 0.07 2.44 8.08 -2.39 -0.02 2.42 16 14 C -0.17 -4.27 8.50 71.98 0.61 -3.66 16 15 C -0.09 -3.90 4.44 30.60 0.14 -3.76 16 16 C 0.04 2.16 4.86 29.85 0.15 2.30 16 17 C -0.54 -31.80 9.11 25.60 0.23 -31.57 16 18 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 19 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 20 N -0.93 -59.25 13.29 21.45 0.28 -58.96 16 21 Si 0.96 46.00 29.54 68.60 2.03 48.02 16 22 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 24 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 25 C 0.07 2.08 4.64 86.33 0.40 2.48 16 26 C -0.12 -3.84 5.72 30.65 0.18 -3.67 16 27 N -0.54 -12.75 8.65 -313.12 -2.71 -15.46 16 28 C 0.11 1.69 10.31 84.81 0.87 2.57 16 29 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.07 0.12 7.71 -2.39 -0.02 0.10 16 31 H 0.07 0.17 7.71 -2.39 -0.02 0.15 16 32 H 0.21 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.10 2.46 6.95 -2.39 -0.02 2.45 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.09 2.16 8.08 -2.39 -0.02 2.14 16 37 H 0.06 1.19 6.73 -2.39 -0.02 1.18 16 38 H 0.06 1.41 6.52 -2.39 -0.02 1.40 16 39 H 0.07 1.43 6.65 -2.39 -0.02 1.42 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.05 2.09 6.05 -2.39 -0.01 2.08 16 43 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 44 H 0.00 0.04 7.75 -2.39 -0.02 0.02 16 45 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 46 H 0.05 1.41 6.62 -2.39 -0.02 1.39 16 47 H 0.07 2.41 5.93 -2.38 -0.01 2.40 16 48 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 50 H 0.21 1.66 6.46 -2.91 -0.02 1.64 16 Total: -1.00 -76.37 393.09 -0.59 -76.96 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.93 Total: 13.39 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 7.58 Total: -10.24 kcal Atomic # 7 Polarization: -103.89 SS G_CDS: -9.27 Total: -113.15 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -1.86 Total: -14.98 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -76.37 -0.59 -76.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172508048.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.404 kcal (2) G-P(sol) polarization free energy of solvation -76.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds