Wall clock time and date at job start Tue Mar 31 2020 19:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36013 * 116.99700 * 2 1 4 4 C 1.39024 * 120.79375 * 180.02562 * 3 2 1 5 5 N 1.32309 * 119.10823 * 180.02562 * 4 3 2 6 6 C 1.32261 * 120.81548 * 0.02562 * 5 4 3 7 7 O 1.35546 * 119.12888 * 179.97438 * 6 5 4 8 8 C 1.42900 * 117.00112 * 180.02562 * 7 6 5 9 9 C 1.53115 * 109.52427 * 149.99719 * 8 7 6 10 10 C 1.53040 * 109.27468 * 177.61983 * 9 8 7 11 11 N 1.46840 * 109.52643 * 300.81826 * 10 9 8 12 12 C 1.46900 * 111.00193 * 185.84105 * 11 10 9 13 13 H 1.08999 * 109.47232 * 188.99207 * 12 11 10 14 14 C 1.53008 * 109.47006 * 308.98555 * 12 11 10 15 15 C 1.52997 * 109.47165 * 68.98829 * 12 11 10 16 16 C 1.52998 * 109.47318 * 64.55398 * 15 12 11 17 17 C 1.50699 * 109.47370 * 184.55819 * 16 15 12 18 18 H 1.08004 * 119.99563 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99875 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00164 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99718 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47211 * 60.00210 * 21 19 17 23 23 H 1.48499 * 109.46673 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46700 * 299.99864 * 21 19 17 25 25 C 1.46846 * 111.19594 * 61.74673 * 11 10 9 26 26 C 1.53041 * 109.52138 * 298.25520 * 25 11 10 27 27 N 1.32267 * 121.73721 * 0.25584 * 6 5 4 28 28 C 1.32310 * 120.81329 * 359.47731 * 27 6 5 29 29 H 1.08998 * 109.47680 * 299.99824 * 1 2 3 30 30 H 1.09003 * 109.47280 * 60.00416 * 1 2 3 31 31 H 1.09001 * 109.46956 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.44027 * 359.97438 * 4 3 2 33 33 H 1.09002 * 109.51884 * 29.86562 * 8 7 6 34 34 H 1.09000 * 109.50404 * 57.68219 * 9 8 7 35 35 H 1.08992 * 109.50609 * 297.55965 * 9 8 7 36 36 H 1.09003 * 109.46148 * 180.80407 * 10 9 8 37 37 H 1.08997 * 109.46312 * 60.84064 * 10 9 8 38 38 H 1.08999 * 109.46593 * 60.00260 * 14 12 11 39 39 H 1.09000 * 109.46903 * 179.97438 * 14 12 11 40 40 H 1.08993 * 109.46926 * 300.00085 * 14 12 11 41 41 H 1.09000 * 109.47178 * 184.55640 * 15 12 11 42 42 H 1.08999 * 109.46923 * 304.55158 * 15 12 11 43 43 H 1.09005 * 109.47257 * 304.55909 * 16 15 12 44 44 H 1.08996 * 109.46909 * 64.55353 * 16 15 12 45 45 H 0.96997 * 119.99904 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.46898 * 58.27134 * 25 11 10 47 47 H 1.09000 * 109.46730 * 178.24556 * 25 11 10 48 48 H 1.08994 * 109.50343 * 299.23946 * 26 25 11 49 49 H 1.09007 * 109.53282 * 179.13961 * 26 25 11 50 50 H 1.08005 * 120.43943 * 180.25418 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 3.4336 1.3040 -0.0005 5 7 3.9993 2.5001 0.0000 6 6 3.2621 3.5982 0.0015 7 8 3.8774 4.8059 0.0026 8 6 3.0375 5.9620 0.0048 9 6 3.7483 7.1096 0.7273 10 6 2.8693 8.3613 0.6746 11 7 2.6147 8.7236 -0.7255 12 6 1.8901 9.9983 -0.8160 13 1 1.5748 10.1646 -1.8461 14 6 0.6598 9.9512 0.0925 15 6 2.8080 11.1393 -0.3729 16 6 3.9803 11.2590 -1.3487 17 6 4.9425 12.3071 -0.8518 18 1 4.7383 12.8347 0.0682 19 6 6.0838 12.5916 -1.5712 20 7 6.3325 11.9487 -2.6912 21 14 7.2768 13.8903 -0.9549 22 1 7.7850 13.4997 0.3846 23 1 8.4146 14.0064 -1.9020 24 1 6.5787 15.1974 -0.8578 25 6 1.8908 7.6558 -1.4270 26 6 2.7406 6.3831 -1.4371 27 7 1.9404 3.5489 0.0076 28 6 1.3054 2.3881 0.0020 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0412 0.4111 -0.0005 33 1 2.1031 5.7323 0.5169 34 1 4.7009 7.3131 0.2381 35 1 3.9242 6.8320 1.7665 36 1 3.3789 9.1843 1.1758 37 1 1.9224 8.1615 1.1760 38 1 0.9751 9.7848 1.1225 39 1 0.1224 10.8971 0.0257 40 1 0.0060 9.1383 -0.2232 41 1 2.2470 12.0738 -0.3626 42 1 3.1876 10.9325 0.6277 43 1 4.4931 10.2997 -1.4200 44 1 3.6069 11.5453 -2.3318 45 1 7.1353 12.1491 -3.1974 46 1 0.9484 7.4592 -0.9158 47 1 1.6897 7.9663 -2.4523 48 1 3.6773 6.5751 -1.9603 49 1 2.1970 5.5860 -1.9445 50 1 0.2259 2.3549 0.0029 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172508051.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:53 Heat of formation + Delta-G solvation = -19.406632 kcal Electronic energy + Delta-G solvation = -29173.273877 eV Core-core repulsion = 25201.811702 eV Total energy + Delta-G solvation = -3971.462174 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.72945 -39.89496 -38.96554 -37.77581 -34.63946 -34.18669 -32.79282 -31.10572 -30.69412 -30.08108 -28.67810 -28.00498 -25.43260 -25.04145 -24.17875 -23.21044 -23.00663 -21.31401 -20.09491 -19.15249 -18.86448 -18.49134 -18.31817 -16.64136 -16.19316 -16.00441 -15.79208 -15.41939 -15.26775 -14.77589 -14.46732 -14.36892 -14.07385 -14.02394 -13.82653 -13.40669 -13.05652 -12.81298 -12.69042 -12.45014 -12.28358 -11.96564 -11.81318 -11.77489 -11.66515 -11.64280 -11.33198 -11.29318 -11.03496 -10.85331 -10.76367 -10.47218 -10.42933 -10.23197 -9.99114 -9.57128 -9.46121 -9.17295 -8.87402 -8.62797 -8.20327 -7.77355 -5.85310 -3.86647 0.58592 0.70891 2.32200 2.72809 3.40001 3.40599 3.45071 3.47214 3.66810 3.87313 4.19247 4.26817 4.43302 4.56474 4.60241 4.65234 4.80098 4.80575 4.95269 5.15097 5.21805 5.27831 5.29930 5.41922 5.44667 5.49984 5.51604 5.58752 5.69203 5.73348 5.84832 5.86333 6.01604 6.06524 6.23188 6.27350 6.28594 6.30729 6.35960 6.45953 6.65089 6.67583 6.88464 7.02381 7.30735 7.52053 7.56906 7.78800 7.87362 8.09992 8.26311 8.59830 9.22124 9.75786 11.25605 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.002215 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.687849 B =12635.731960 C =13506.958651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.305 6.305 3 C -0.025 4.025 4 C 0.169 3.831 5 N -0.489 5.489 6 C 0.477 3.523 7 O -0.278 6.278 8 C 0.098 3.902 9 C -0.114 4.114 10 C 0.061 3.939 11 N -0.519 5.519 12 C 0.082 3.918 13 H 0.077 0.923 14 C -0.185 4.185 15 C -0.101 4.101 16 C 0.028 3.972 17 C -0.519 4.519 18 H 0.050 0.950 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.886 3.114 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.279 1.279 25 C 0.063 3.937 26 C -0.130 4.130 27 N -0.534 5.534 28 C 0.109 3.891 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.184 0.816 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.032 0.968 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.045 0.955 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.035 0.965 44 H 0.008 0.992 45 H 0.258 0.742 46 H 0.030 0.970 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.065 0.935 50 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.525 -24.009 6.306 29.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.216 6.216 3 C -0.076 4.076 4 C 0.001 3.999 5 N -0.214 5.214 6 C 0.175 3.825 7 O -0.179 6.179 8 C 0.041 3.959 9 C -0.152 4.152 10 C -0.067 4.067 11 N -0.243 5.243 12 C -0.025 4.025 13 H 0.095 0.905 14 C -0.243 4.243 15 C -0.139 4.139 16 C -0.009 4.009 17 C -0.557 4.557 18 H 0.068 0.932 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.715 3.285 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.205 1.205 25 C -0.066 4.066 26 C -0.169 4.169 27 N -0.264 5.264 28 C -0.057 4.057 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.201 0.799 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.053 0.947 44 H 0.026 0.974 45 H 0.068 0.932 46 H 0.048 0.952 47 H 0.097 0.903 48 H 0.102 0.898 49 H 0.083 0.917 50 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -14.115 -23.077 5.931 27.694 hybrid contribution -0.978 -0.041 0.611 1.154 sum -15.093 -23.117 6.542 28.373 Atomic orbital electron populations 1.23148 0.77975 1.04643 1.01533 1.86115 1.21570 1.24679 1.89249 1.20629 0.94961 0.86790 1.05170 1.22590 0.89466 0.94949 0.92898 1.67712 1.39464 0.96736 1.17511 1.20696 0.83851 0.87197 0.90767 1.86229 1.35160 1.10332 1.86229 1.22665 0.93836 0.81499 0.97889 1.21740 1.01055 0.92226 1.00202 1.22050 0.97665 0.96868 0.90118 1.62053 1.46991 1.02119 1.13094 1.21857 0.91603 0.89929 0.99156 0.90456 1.22513 0.99359 1.01489 1.00983 1.21711 0.97576 0.94045 1.00596 1.19012 0.91313 0.97471 0.93078 1.21286 1.05908 1.20826 1.07713 0.93221 1.24993 0.97947 0.96358 0.95089 1.69964 1.26603 1.41725 1.15016 0.86757 0.80834 0.82357 0.78583 1.20376 1.21423 1.20474 1.21963 0.94180 0.90832 0.99579 1.22017 1.02018 0.97092 0.95737 1.67937 1.09960 1.29667 1.18790 1.23115 1.00858 0.86077 0.95695 0.92425 0.92383 0.87634 0.79925 0.89623 0.89207 0.91026 0.88913 0.95026 0.92522 0.92263 0.93564 0.93407 0.93301 0.94708 0.97406 0.93183 0.95192 0.90320 0.89754 0.91656 0.81122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 9.84 101.05 0.99 1.07 16 2 O -0.30 -2.11 10.52 -19.78 -0.21 -2.32 16 3 C -0.03 -0.22 6.73 -39.00 -0.26 -0.48 16 4 C 0.17 1.60 11.27 -17.05 -0.19 1.41 16 5 N -0.49 -6.37 10.46 -14.62 -0.15 -6.52 16 6 C 0.48 6.59 8.46 -91.35 -0.77 5.82 16 7 O -0.28 -4.23 9.85 -18.33 -0.18 -4.41 16 8 C 0.10 1.34 2.43 -26.61 -0.06 1.28 16 9 C -0.11 -1.63 5.75 -26.65 -0.15 -1.79 16 10 C 0.06 0.90 4.46 -3.84 -0.02 0.88 16 11 N -0.52 -8.51 3.94 -226.69 -0.89 -9.40 16 12 C 0.08 1.38 2.30 -67.71 -0.16 1.22 16 13 H 0.08 1.33 7.92 -51.93 -0.41 0.92 16 14 C -0.18 -2.50 8.39 37.16 0.31 -2.19 16 15 C -0.10 -2.07 4.59 -26.73 -0.12 -2.19 16 16 C 0.03 0.74 4.91 -27.88 -0.14 0.60 16 17 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 18 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.57 13.29 55.43 0.74 -26.83 16 21 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 C 0.06 0.88 5.18 -3.83 -0.02 0.86 16 26 C -0.13 -1.82 5.72 -26.65 -0.15 -1.97 16 27 N -0.53 -6.37 8.65 -14.63 -0.13 -6.49 16 28 C 0.11 0.96 10.30 -17.06 -0.18 0.78 16 29 H 0.06 0.14 7.71 -51.93 -0.40 -0.26 16 30 H 0.06 0.15 7.71 -51.93 -0.40 -0.25 16 31 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.09 1.13 6.95 -51.93 -0.36 0.77 16 34 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.49 6.28 -51.93 -0.33 1.16 16 37 H 0.03 0.42 6.57 -51.93 -0.34 0.08 16 38 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.57 6.94 -51.93 -0.36 0.21 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.99 6.37 -51.93 -0.33 0.66 16 43 H 0.03 0.98 7.62 -51.93 -0.40 0.58 16 44 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.03 0.39 6.99 -51.93 -0.36 0.02 16 47 H 0.08 1.10 7.98 -51.93 -0.41 0.68 16 48 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 49 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.17 0.92 6.46 -52.48 -0.34 0.58 16 LS Contribution 393.65 15.07 5.93 5.93 Total: -1.00 -33.75 393.65 -9.37 -43.12 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -8.12 Total: -1.88 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -1.33 Total: -8.38 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.44 Total: -49.25 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.39 Total: -6.73 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.75 -9.37 -43.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172508051.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.712 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds