Wall clock time and date at job start Tue Mar 31 2020 19:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36013 * 116.99700 * 2 1 4 4 C 1.39024 * 120.79375 * 180.02562 * 3 2 1 5 5 N 1.32309 * 119.10823 * 180.02562 * 4 3 2 6 6 C 1.32261 * 120.81548 * 0.02562 * 5 4 3 7 7 O 1.35546 * 119.12888 * 179.97438 * 6 5 4 8 8 C 1.42900 * 117.00112 * 180.02562 * 7 6 5 9 9 C 1.53115 * 109.52427 * 149.99719 * 8 7 6 10 10 C 1.53040 * 109.27468 * 177.61983 * 9 8 7 11 11 N 1.46840 * 109.52643 * 300.81826 * 10 9 8 12 12 C 1.46900 * 111.00193 * 185.84105 * 11 10 9 13 13 H 1.08999 * 109.47232 * 188.99207 * 12 11 10 14 14 C 1.53008 * 109.47006 * 308.98555 * 12 11 10 15 15 C 1.52997 * 109.47165 * 68.98829 * 12 11 10 16 16 C 1.52998 * 109.47318 * 64.55398 * 15 12 11 17 17 C 1.50699 * 109.47370 * 184.55819 * 16 15 12 18 18 H 1.08004 * 119.99563 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99875 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00164 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99718 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47211 * 60.00210 * 21 19 17 23 23 H 1.48499 * 109.46673 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46700 * 299.99864 * 21 19 17 25 25 C 1.46846 * 111.19594 * 61.74673 * 11 10 9 26 26 C 1.53041 * 109.52138 * 298.25520 * 25 11 10 27 27 N 1.32267 * 121.73721 * 0.25584 * 6 5 4 28 28 C 1.32310 * 120.81329 * 359.47731 * 27 6 5 29 29 H 1.08998 * 109.47680 * 299.99824 * 1 2 3 30 30 H 1.09003 * 109.47280 * 60.00416 * 1 2 3 31 31 H 1.09001 * 109.46956 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.44027 * 359.97438 * 4 3 2 33 33 H 1.09002 * 109.51884 * 29.86562 * 8 7 6 34 34 H 1.09000 * 109.50404 * 57.68219 * 9 8 7 35 35 H 1.08992 * 109.50609 * 297.55965 * 9 8 7 36 36 H 1.09003 * 109.46148 * 180.80407 * 10 9 8 37 37 H 1.08997 * 109.46312 * 60.84064 * 10 9 8 38 38 H 1.08999 * 109.46593 * 60.00260 * 14 12 11 39 39 H 1.09000 * 109.46903 * 179.97438 * 14 12 11 40 40 H 1.08993 * 109.46926 * 300.00085 * 14 12 11 41 41 H 1.09000 * 109.47178 * 184.55640 * 15 12 11 42 42 H 1.08999 * 109.46923 * 304.55158 * 15 12 11 43 43 H 1.09005 * 109.47257 * 304.55909 * 16 15 12 44 44 H 1.08996 * 109.46909 * 64.55353 * 16 15 12 45 45 H 0.96997 * 119.99904 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.46898 * 58.27134 * 25 11 10 47 47 H 1.09000 * 109.46730 * 178.24556 * 25 11 10 48 48 H 1.08994 * 109.50343 * 299.23946 * 26 25 11 49 49 H 1.09007 * 109.53282 * 179.13961 * 26 25 11 50 50 H 1.08005 * 120.43943 * 180.25418 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 3.4336 1.3040 -0.0005 5 7 3.9993 2.5001 0.0000 6 6 3.2621 3.5982 0.0015 7 8 3.8774 4.8059 0.0026 8 6 3.0375 5.9620 0.0048 9 6 3.7483 7.1096 0.7273 10 6 2.8693 8.3613 0.6746 11 7 2.6147 8.7236 -0.7255 12 6 1.8901 9.9983 -0.8160 13 1 1.5748 10.1646 -1.8461 14 6 0.6598 9.9512 0.0925 15 6 2.8080 11.1393 -0.3729 16 6 3.9803 11.2590 -1.3487 17 6 4.9425 12.3071 -0.8518 18 1 4.7383 12.8347 0.0682 19 6 6.0838 12.5916 -1.5712 20 7 6.3325 11.9487 -2.6912 21 14 7.2768 13.8903 -0.9549 22 1 7.7850 13.4997 0.3846 23 1 8.4146 14.0064 -1.9020 24 1 6.5787 15.1974 -0.8578 25 6 1.8908 7.6558 -1.4270 26 6 2.7406 6.3831 -1.4371 27 7 1.9404 3.5489 0.0076 28 6 1.3054 2.3881 0.0020 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0412 0.4111 -0.0005 33 1 2.1031 5.7323 0.5169 34 1 4.7009 7.3131 0.2381 35 1 3.9242 6.8320 1.7665 36 1 3.3789 9.1843 1.1758 37 1 1.9224 8.1615 1.1760 38 1 0.9751 9.7848 1.1225 39 1 0.1224 10.8971 0.0257 40 1 0.0060 9.1383 -0.2232 41 1 2.2470 12.0738 -0.3626 42 1 3.1876 10.9325 0.6277 43 1 4.4931 10.2997 -1.4200 44 1 3.6069 11.5453 -2.3318 45 1 7.1353 12.1491 -3.1974 46 1 0.9484 7.4592 -0.9158 47 1 1.6897 7.9663 -2.4523 48 1 3.6773 6.5751 -1.9603 49 1 2.1970 5.5860 -1.9445 50 1 0.2259 2.3549 0.0029 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172508051.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:52 Heat of formation + Delta-G solvation = -43.902929 kcal Electronic energy + Delta-G solvation = -29174.336116 eV Core-core repulsion = 25201.811702 eV Total energy + Delta-G solvation = -3972.524413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.51848 -40.91218 -39.83125 -38.71885 -36.13288 -35.00516 -34.71473 -32.36187 -31.80565 -31.34668 -29.99680 -28.42334 -27.06394 -26.13318 -25.12415 -24.22305 -24.13847 -23.05181 -21.45404 -20.30297 -19.87414 -19.15885 -19.07084 -18.34813 -17.41905 -17.20956 -16.55258 -16.49248 -16.31028 -16.03720 -15.81240 -15.41442 -15.15592 -15.03166 -14.66023 -14.56774 -14.39532 -14.15503 -14.01519 -13.46719 -13.36140 -13.27589 -13.17802 -12.99508 -12.89444 -12.78349 -12.42470 -12.36501 -12.33388 -12.22404 -12.15520 -12.05665 -11.68926 -11.56839 -11.46340 -11.22622 -11.09639 -10.89897 -10.46090 -10.27420 -9.36105 -8.99274 -8.11690 -6.21861 -0.13155 -0.07399 1.39833 1.43281 1.45049 1.50754 2.18808 2.44567 2.59670 2.90060 2.98772 3.20634 3.22878 3.53784 3.68657 3.69582 3.80709 4.01745 4.06420 4.21441 4.26470 4.32551 4.36840 4.40775 4.42363 4.49069 4.52068 4.64077 4.65819 4.74498 4.78395 4.79615 4.82132 4.90789 4.92720 5.05320 5.09313 5.09485 5.14627 5.24292 5.34547 5.49887 5.55926 5.61553 5.91331 5.96582 6.06376 6.22411 6.30957 6.34444 6.37402 6.95135 6.98464 7.45925 8.99311 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.002215 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.687849 B =12635.731960 C =13506.958651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.310 6.310 3 C -0.008 4.008 4 C 0.158 3.842 5 N -0.519 5.519 6 C 0.450 3.550 7 O -0.304 6.304 8 C 0.108 3.892 9 C -0.111 4.111 10 C 0.066 3.934 11 N -0.549 5.549 12 C 0.088 3.912 13 H 0.067 0.933 14 C -0.173 4.173 15 C -0.091 4.091 16 C 0.037 3.963 17 C -0.540 4.540 18 H 0.056 0.944 19 C -0.003 4.003 20 N -0.933 5.933 21 Si 0.959 3.041 22 H -0.268 1.268 23 H -0.286 1.286 24 H -0.267 1.267 25 C 0.069 3.931 26 C -0.123 4.123 27 N -0.542 5.542 28 C 0.106 3.894 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.125 0.875 32 H 0.209 0.791 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.005 0.995 44 H -0.023 1.023 45 H 0.260 0.740 46 H 0.054 0.946 47 H 0.075 0.925 48 H 0.053 0.947 49 H 0.075 0.925 50 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.883 -25.143 7.838 31.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.222 6.222 3 C -0.058 4.058 4 C -0.009 4.009 5 N -0.245 5.245 6 C 0.148 3.852 7 O -0.206 6.206 8 C 0.051 3.949 9 C -0.149 4.149 10 C -0.061 4.061 11 N -0.274 5.274 12 C -0.020 4.020 13 H 0.086 0.914 14 C -0.232 4.232 15 C -0.128 4.128 16 C 0.000 4.000 17 C -0.578 4.578 18 H 0.074 0.926 19 C -0.200 4.200 20 N -0.573 5.573 21 Si 0.784 3.216 22 H -0.193 1.193 23 H -0.211 1.211 24 H -0.191 1.191 25 C -0.059 4.059 26 C -0.161 4.161 27 N -0.272 5.272 28 C -0.060 4.060 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.143 0.857 32 H 0.226 0.774 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.023 0.977 44 H -0.005 1.005 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.093 0.907 48 H 0.072 0.928 49 H 0.094 0.906 50 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -16.506 -24.241 7.475 30.265 hybrid contribution -0.312 0.114 0.096 0.345 sum -16.818 -24.127 7.571 30.369 Atomic orbital electron populations 1.23512 0.75762 1.06473 1.02716 1.86132 1.23794 1.23630 1.88608 1.20606 0.94693 0.87448 1.03092 1.23043 0.90687 0.94601 0.92578 1.67653 1.40662 0.97618 1.18525 1.20755 0.84727 0.86783 0.92959 1.86159 1.36226 1.11268 1.86975 1.22517 0.93907 0.81096 0.97346 1.21681 0.99616 0.92735 1.00868 1.21986 0.98580 0.96216 0.89350 1.61939 1.48294 1.02755 1.14409 1.21650 0.92116 0.88795 0.99395 0.91430 1.22372 0.97703 1.02784 1.00303 1.21524 0.96179 0.96174 0.98966 1.18832 0.92929 0.95161 0.93046 1.21770 1.06690 1.21372 1.07955 0.92589 1.25955 1.00074 0.98761 0.95209 1.70120 1.27311 1.43489 1.16421 0.85595 0.78209 0.79572 0.78209 1.19330 1.21105 1.19148 1.21935 0.94732 0.89855 0.99398 1.21923 1.00700 0.97483 0.96003 1.67921 1.09054 1.31112 1.19100 1.23706 1.02373 0.85261 0.94630 0.91116 0.91235 0.85668 0.77416 0.88388 0.92421 0.89521 0.90639 0.92443 0.91851 0.91450 0.91614 0.92916 0.93077 0.97701 1.00501 0.93139 0.92795 0.90698 0.92768 0.90629 0.77606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.84 113.37 1.12 1.14 16 2 O -0.31 -3.42 10.52 -93.70 -0.99 -4.41 16 3 C -0.01 -0.12 6.73 22.64 0.15 0.04 16 4 C 0.16 2.84 11.27 84.81 0.96 3.80 16 5 N -0.52 -13.64 10.46 -313.12 -3.27 -16.91 16 6 C 0.45 12.51 8.46 180.60 1.53 14.04 16 7 O -0.30 -9.57 9.85 -88.52 -0.87 -10.44 16 8 C 0.11 2.98 2.43 30.67 0.07 3.06 16 9 C -0.11 -3.26 5.75 30.65 0.18 -3.08 16 10 C 0.07 1.94 4.46 86.33 0.39 2.33 16 11 N -0.55 -18.20 3.94 -871.12 -3.43 -21.63 16 12 C 0.09 2.93 2.30 44.92 0.10 3.03 16 13 H 0.07 2.35 7.92 -2.39 -0.02 2.33 16 14 C -0.17 -4.23 8.39 71.98 0.60 -3.63 16 15 C -0.09 -3.74 4.59 30.59 0.14 -3.60 16 16 C 0.04 2.05 4.91 29.85 0.15 2.19 16 17 C -0.54 -31.84 9.11 25.60 0.23 -31.60 16 18 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 19 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 20 N -0.93 -59.42 13.29 21.45 0.28 -59.13 16 21 Si 0.96 46.07 29.54 68.60 2.03 48.10 16 22 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 25 C 0.07 1.89 5.18 86.33 0.45 2.34 16 26 C -0.12 -3.50 5.72 30.65 0.18 -3.32 16 27 N -0.54 -12.25 8.65 -313.12 -2.71 -14.95 16 28 C 0.11 1.61 10.30 84.81 0.87 2.48 16 29 H 0.07 0.07 7.71 -2.39 -0.02 0.05 16 30 H 0.07 0.09 7.71 -2.39 -0.02 0.07 16 31 H 0.13 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.21 2.34 8.06 -2.91 -0.02 2.32 16 33 H 0.10 2.46 6.95 -2.39 -0.02 2.45 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.08 2.45 6.28 -2.39 -0.01 2.43 16 37 H 0.06 1.39 6.57 -2.39 -0.02 1.37 16 38 H 0.06 1.48 6.44 -2.39 -0.02 1.46 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 1.38 6.94 -2.39 -0.02 1.36 16 41 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.05 2.07 6.37 -2.39 -0.02 2.06 16 43 H 0.00 0.27 7.62 -2.38 -0.02 0.26 16 44 H -0.02 -1.40 8.14 -2.39 -0.02 -1.42 16 45 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 46 H 0.05 1.24 6.99 -2.39 -0.02 1.23 16 47 H 0.07 2.09 7.98 -2.39 -0.02 2.08 16 48 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 50 H 0.21 1.43 6.46 -2.91 -0.02 1.41 16 Total: -1.00 -76.37 393.65 -0.46 -76.83 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.93 Total: 13.04 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 7.57 Total: -10.50 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -9.13 Total: -112.62 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -1.86 Total: -14.85 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -76.37 -0.46 -76.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172508051.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.925 kcal (2) G-P(sol) polarization free energy of solvation -76.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds