Wall clock time and date at job start Tue Mar 31 2020 18:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35911 * 116.99858 * 2 1 4 4 C 1.39136 * 120.47231 * 179.97438 * 3 2 1 5 5 C 1.38545 * 118.37332 * 179.69707 * 4 3 2 6 6 C 1.38251 * 119.21857 * 0.27640 * 5 4 3 7 7 C 1.50702 * 119.55473 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47009 * 124.99978 * 7 6 5 9 9 O 1.21281 * 119.99971 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99680 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99669 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47304 * 34.99751 * 11 10 8 13 13 C 1.53001 * 109.46821 * 274.99678 * 11 10 8 14 14 C 1.52999 * 109.47106 * 154.99749 * 11 10 8 15 15 C 1.53003 * 109.47229 * 295.00050 * 14 11 10 16 16 C 1.52999 * 109.47229 * 179.97438 * 15 14 11 17 17 C 1.52995 * 109.47251 * 179.97438 * 16 15 14 18 18 N 1.46497 * 109.47253 * 179.97438 * 17 16 15 19 19 C 1.36939 * 120.00153 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99672 * 0.02562 * 19 18 17 21 21 C 1.38808 * 120.00183 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00059 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00070 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47267 * 90.00416 * 23 21 19 25 25 H 1.48505 * 109.47234 * 209.99914 * 23 21 19 26 26 H 1.48494 * 109.47481 * 330.00281 * 23 21 19 27 27 N 1.31842 * 120.88969 * 359.97438 * 6 5 4 28 28 C 1.31846 * 121.78127 * 359.97438 * 27 6 5 29 29 H 1.09002 * 109.47052 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47071 * 300.00270 * 1 2 3 31 31 H 1.09000 * 109.47025 * 60.00190 * 1 2 3 32 32 H 1.08002 * 120.81609 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.38410 * 180.25316 * 5 4 3 34 34 H 1.08997 * 109.47516 * 245.00135 * 7 6 5 35 35 H 1.09006 * 109.46749 * 5.00482 * 7 6 5 36 36 H 0.96997 * 120.00277 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.47211 * 59.99972 * 13 11 10 38 38 H 1.09004 * 109.46820 * 179.97438 * 13 11 10 39 39 H 1.08999 * 109.47241 * 300.00111 * 13 11 10 40 40 H 1.09006 * 109.46945 * 55.00122 * 14 11 10 41 41 H 1.09001 * 109.47348 * 174.99692 * 14 11 10 42 42 H 1.08996 * 109.46482 * 299.99948 * 15 14 11 43 43 H 1.09000 * 109.47052 * 60.00097 * 15 14 11 44 44 H 1.09006 * 109.46945 * 300.00072 * 16 15 14 45 45 H 1.09009 * 109.47086 * 59.99455 * 16 15 14 46 46 H 1.08993 * 109.47149 * 300.00284 * 17 16 15 47 47 H 1.09001 * 109.47033 * 59.99699 * 17 16 15 48 48 H 0.97007 * 120.00150 * 359.97438 * 18 17 16 49 49 H 0.96997 * 120.00715 * 180.02562 * 22 21 19 50 50 H 1.07995 * 119.65565 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0181 2.5519 -0.0059 6 6 3.2079 3.6721 -0.0068 7 6 3.8343 5.0427 -0.0133 8 6 3.2981 5.8346 -1.1779 9 8 2.4868 5.3354 -1.9285 10 7 3.7202 7.0977 -1.3853 11 6 3.1985 7.8678 -2.5172 12 1 2.1539 7.6053 -2.6847 13 6 4.0128 7.5455 -3.7718 14 6 3.3057 9.3627 -2.2097 15 6 2.3935 9.7075 -1.0307 16 6 2.5011 11.2023 -0.7228 17 6 1.5885 11.5473 0.4557 18 7 1.6920 12.9784 0.7510 19 6 0.9600 13.5214 1.7731 20 1 0.3067 12.8945 2.3617 21 6 1.0585 14.8774 2.0532 22 7 1.8551 15.6414 1.3361 23 14 0.0606 15.6179 3.4478 24 1 0.8459 15.5543 4.7066 25 1 -0.2554 17.0343 3.1327 26 1 -1.2021 14.8540 3.6130 27 7 1.8944 3.5574 -0.0021 28 6 1.3002 2.3805 0.0031 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.0433 0.4030 0.0014 33 1 5.0932 2.6552 -0.0098 34 1 3.5935 5.5567 0.9172 35 1 4.9162 4.9472 -0.1062 36 1 4.3688 7.4971 -0.7848 37 1 3.9365 6.4805 -3.9909 38 1 3.6244 8.1181 -4.6141 39 1 5.0574 7.8080 -3.6044 40 1 4.3368 9.6083 -1.9553 41 1 3.0009 9.9365 -3.0849 42 1 1.3625 9.4619 -1.2852 43 1 2.6983 9.1338 -0.1555 44 1 3.5323 11.4475 -0.4682 45 1 2.1966 11.7765 -1.5979 46 1 0.5575 11.3021 0.2008 47 1 1.8925 10.9731 1.3310 48 1 2.2791 13.5415 0.2225 49 1 1.9242 16.5888 1.5320 50 1 0.2216 2.3265 0.0064 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174897639.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:53 Heat of formation + Delta-G solvation = -47.103520 kcal Electronic energy + Delta-G solvation = -27547.095494 eV Core-core repulsion = 23574.432292 eV Total energy + Delta-G solvation = -3972.663201 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.09884 -39.88841 -38.50040 -36.87043 -35.20093 -33.26000 -32.79977 -32.75377 -31.38135 -30.24654 -28.46899 -27.45630 -27.40172 -24.25626 -23.81744 -22.91704 -22.05399 -20.93147 -20.66699 -20.50572 -18.56513 -17.63179 -17.05916 -16.98011 -16.70436 -16.26244 -15.90095 -15.42416 -14.95647 -14.69139 -14.66193 -14.54687 -14.18543 -13.84334 -13.60128 -13.43092 -13.34168 -13.11177 -12.98630 -12.90690 -12.56443 -12.39584 -12.33193 -12.17377 -11.77629 -11.71908 -11.40141 -11.21683 -10.96130 -10.78345 -10.66575 -10.38778 -10.26395 -10.09508 -9.96245 -9.91050 -9.64273 -9.63255 -9.13321 -8.83033 -8.70397 -6.87262 -5.72865 -3.01062 0.75321 0.96028 2.59224 2.74164 3.00567 3.45888 3.50771 3.51472 3.52841 3.95032 4.28094 4.30084 4.49256 4.55381 4.64839 4.69812 4.70806 4.80380 4.91641 4.96987 5.03602 5.04308 5.07404 5.13370 5.26376 5.30370 5.46112 5.49298 5.57247 5.58342 5.66492 5.70592 5.74258 5.83137 5.94986 5.99910 6.11677 6.15169 6.28837 6.35123 6.42239 6.47148 6.51371 6.77829 6.93799 6.97659 7.40981 7.71643 7.73701 8.17766 8.46631 9.57273 10.16887 10.51484 11.50260 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013265 B = 0.001745 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.260627 B =16037.945952 C =17478.271273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.314 6.314 3 C 0.072 3.928 4 C -0.109 4.109 5 C -0.126 4.126 6 C 0.106 3.894 7 C -0.090 4.090 8 C 0.519 3.481 9 O -0.524 6.524 10 N -0.725 5.725 11 C 0.142 3.858 12 H 0.087 0.913 13 C -0.162 4.162 14 C -0.126 4.126 15 C -0.113 4.113 16 C -0.125 4.125 17 C 0.152 3.848 18 N -0.735 5.735 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 N -0.419 5.419 28 C 0.027 3.973 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.400 0.600 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.383 0.617 49 H 0.254 0.746 50 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.731 -32.095 -6.535 33.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.226 6.226 3 C 0.024 3.976 4 C -0.136 4.136 5 C -0.146 4.146 6 C -0.033 4.033 7 C -0.130 4.130 8 C 0.304 3.696 9 O -0.399 6.399 10 N -0.378 5.378 11 C 0.038 3.962 12 H 0.105 0.895 13 C -0.220 4.220 14 C -0.164 4.164 15 C -0.152 4.152 16 C -0.163 4.163 17 C 0.025 3.975 18 N -0.379 5.379 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.739 3.261 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 N -0.127 5.127 28 C -0.132 4.132 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.234 0.766 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.216 0.784 49 H 0.064 0.936 50 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.564 -31.897 -6.959 33.118 hybrid contribution 0.222 0.239 0.904 0.961 sum 5.786 -31.657 -6.056 32.746 Atomic orbital electron populations 1.23140 0.77830 1.04377 1.01825 1.86061 1.21805 1.26118 1.88610 1.20111 0.93320 0.85791 0.98349 1.20857 0.91672 0.98734 1.02317 1.21786 1.01231 0.91646 0.99904 1.20433 0.89315 0.94234 0.99273 1.20555 1.01022 0.91976 0.99457 1.20244 0.81585 0.81796 0.85926 1.90726 1.32521 1.69567 1.47128 1.46088 1.46591 1.14067 1.31073 1.21005 0.99054 0.90836 0.85325 0.89453 1.22169 1.00226 1.02095 0.97554 1.21934 1.00898 0.93672 0.99924 1.21512 0.99554 0.96707 0.97385 1.21728 1.00537 0.94707 0.99358 1.20649 0.95979 0.86923 0.93992 1.42392 1.53164 1.03128 1.39201 1.19265 1.18236 0.91911 1.07516 0.91228 1.24745 1.00319 0.96332 0.99814 1.69662 1.41513 1.05242 1.41976 0.86177 0.79633 0.78424 0.81907 1.21756 1.21769 1.20779 1.67298 1.11413 1.26318 1.07718 1.22897 1.00557 0.86906 1.02884 0.87872 0.92272 0.92237 0.83998 0.84023 0.86917 0.87370 0.76591 0.92425 0.91650 0.92538 0.91382 0.90340 0.92021 0.92080 0.92153 0.92110 0.96568 0.96622 0.78363 0.93576 0.82574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.82 101.05 0.99 1.11 16 2 O -0.31 -2.62 10.51 -19.46 -0.20 -2.83 16 3 C 0.07 0.67 6.71 -39.08 -0.26 0.41 16 4 C -0.11 -0.89 10.13 -39.13 -0.40 -1.29 16 5 C -0.13 -0.98 9.70 -39.46 -0.38 -1.36 16 6 C 0.11 1.08 5.76 -82.58 -0.48 0.60 16 7 C -0.09 -0.70 6.10 -29.03 -0.18 -0.88 16 8 C 0.52 5.68 7.73 -10.98 -0.08 5.60 16 9 O -0.52 -8.01 14.99 5.56 0.08 -7.93 16 10 N -0.73 -6.53 4.53 -53.80 -0.24 -6.78 16 11 C 0.14 1.42 2.57 -67.93 -0.17 1.25 16 12 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 13 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 14 C -0.13 -1.26 4.75 -26.73 -0.13 -1.38 16 15 C -0.11 -1.42 5.10 -26.73 -0.14 -1.56 16 16 C -0.13 -2.01 5.33 -26.73 -0.14 -2.16 16 17 C 0.15 3.18 6.26 -4.05 -0.03 3.15 16 18 N -0.73 -19.37 5.60 -59.92 -0.34 -19.70 16 19 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 20 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 21 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 22 N -0.93 -28.83 13.06 55.49 0.72 -28.11 16 23 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 N -0.42 -5.19 9.21 -9.35 -0.09 -5.27 16 28 C 0.03 0.28 10.22 -17.37 -0.18 0.10 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.24 7.67 -51.93 -0.40 -0.16 16 31 H 0.06 0.27 7.69 -51.93 -0.40 -0.13 16 32 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.14 0.64 7.95 -52.49 -0.42 0.22 16 34 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.11 0.46 7.87 -51.93 -0.41 0.06 16 36 H 0.40 2.63 8.60 -40.82 -0.35 2.28 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.74 7.75 -51.93 -0.40 0.34 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.38 10.50 7.67 -40.82 -0.31 10.19 16 49 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 50 H 0.16 1.30 6.32 -52.49 -0.33 0.97 16 LS Contribution 414.94 15.07 6.25 6.25 Total: -1.00 -37.20 414.94 -8.75 -45.95 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -8.46 Total: 5.76 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -1.46 Total: -5.17 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: 0.06 Total: -59.86 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -0.12 Total: -10.76 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -37.20 -8.75 -45.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174897639.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.153 kcal (2) G-P(sol) polarization free energy of solvation -37.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds