Wall clock time and date at job start Tue Mar 31 2020 18:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35911 * 116.99858 * 2 1 4 4 C 1.39136 * 120.47231 * 179.97438 * 3 2 1 5 5 C 1.38545 * 118.37332 * 179.69707 * 4 3 2 6 6 C 1.38251 * 119.21857 * 0.27640 * 5 4 3 7 7 C 1.50702 * 119.55473 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47009 * 124.99978 * 7 6 5 9 9 O 1.21281 * 119.99971 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99680 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99669 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47304 * 34.99751 * 11 10 8 13 13 C 1.53001 * 109.46821 * 274.99678 * 11 10 8 14 14 C 1.52999 * 109.47106 * 154.99749 * 11 10 8 15 15 C 1.53003 * 109.47229 * 295.00050 * 14 11 10 16 16 C 1.52999 * 109.47229 * 179.97438 * 15 14 11 17 17 C 1.52995 * 109.47251 * 179.97438 * 16 15 14 18 18 N 1.46497 * 109.47253 * 179.97438 * 17 16 15 19 19 C 1.36939 * 120.00153 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99672 * 0.02562 * 19 18 17 21 21 C 1.38808 * 120.00183 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00059 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00070 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47267 * 90.00416 * 23 21 19 25 25 H 1.48505 * 109.47234 * 209.99914 * 23 21 19 26 26 H 1.48494 * 109.47481 * 330.00281 * 23 21 19 27 27 N 1.31842 * 120.88969 * 359.97438 * 6 5 4 28 28 C 1.31846 * 121.78127 * 359.97438 * 27 6 5 29 29 H 1.09002 * 109.47052 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47071 * 300.00270 * 1 2 3 31 31 H 1.09000 * 109.47025 * 60.00190 * 1 2 3 32 32 H 1.08002 * 120.81609 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.38410 * 180.25316 * 5 4 3 34 34 H 1.08997 * 109.47516 * 245.00135 * 7 6 5 35 35 H 1.09006 * 109.46749 * 5.00482 * 7 6 5 36 36 H 0.96997 * 120.00277 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.47211 * 59.99972 * 13 11 10 38 38 H 1.09004 * 109.46820 * 179.97438 * 13 11 10 39 39 H 1.08999 * 109.47241 * 300.00111 * 13 11 10 40 40 H 1.09006 * 109.46945 * 55.00122 * 14 11 10 41 41 H 1.09001 * 109.47348 * 174.99692 * 14 11 10 42 42 H 1.08996 * 109.46482 * 299.99948 * 15 14 11 43 43 H 1.09000 * 109.47052 * 60.00097 * 15 14 11 44 44 H 1.09006 * 109.46945 * 300.00072 * 16 15 14 45 45 H 1.09009 * 109.47086 * 59.99455 * 16 15 14 46 46 H 1.08993 * 109.47149 * 300.00284 * 17 16 15 47 47 H 1.09001 * 109.47033 * 59.99699 * 17 16 15 48 48 H 0.97007 * 120.00150 * 359.97438 * 18 17 16 49 49 H 0.96997 * 120.00715 * 180.02562 * 22 21 19 50 50 H 1.07995 * 119.65565 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0181 2.5519 -0.0059 6 6 3.2079 3.6721 -0.0068 7 6 3.8343 5.0427 -0.0133 8 6 3.2981 5.8346 -1.1779 9 8 2.4868 5.3354 -1.9285 10 7 3.7202 7.0977 -1.3853 11 6 3.1985 7.8678 -2.5172 12 1 2.1539 7.6053 -2.6847 13 6 4.0128 7.5455 -3.7718 14 6 3.3057 9.3627 -2.2097 15 6 2.3935 9.7075 -1.0307 16 6 2.5011 11.2023 -0.7228 17 6 1.5885 11.5473 0.4557 18 7 1.6920 12.9784 0.7510 19 6 0.9600 13.5214 1.7731 20 1 0.3067 12.8945 2.3617 21 6 1.0585 14.8774 2.0532 22 7 1.8551 15.6414 1.3361 23 14 0.0606 15.6179 3.4478 24 1 0.8459 15.5543 4.7066 25 1 -0.2554 17.0343 3.1327 26 1 -1.2021 14.8540 3.6130 27 7 1.8944 3.5574 -0.0021 28 6 1.3002 2.3805 0.0031 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.0433 0.4030 0.0014 33 1 5.0932 2.6552 -0.0098 34 1 3.5935 5.5567 0.9172 35 1 4.9162 4.9472 -0.1062 36 1 4.3688 7.4971 -0.7848 37 1 3.9365 6.4805 -3.9909 38 1 3.6244 8.1181 -4.6141 39 1 5.0574 7.8080 -3.6044 40 1 4.3368 9.6083 -1.9553 41 1 3.0009 9.9365 -3.0849 42 1 1.3625 9.4619 -1.2852 43 1 2.6983 9.1338 -0.1555 44 1 3.5323 11.4475 -0.4682 45 1 2.1966 11.7765 -1.5979 46 1 0.5575 11.3021 0.2008 47 1 1.8925 10.9731 1.3310 48 1 2.2791 13.5415 0.2225 49 1 1.9242 16.5888 1.5320 50 1 0.2216 2.3265 0.0064 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174897639.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:52 Heat of formation + Delta-G solvation = -72.972697 kcal Electronic energy + Delta-G solvation = -27548.217265 eV Core-core repulsion = 23574.432292 eV Total energy + Delta-G solvation = -3973.784973 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.74628 -40.67816 -39.12870 -37.94760 -36.77076 -34.73698 -33.62668 -33.38586 -32.75984 -31.54631 -29.02245 -28.79177 -28.02465 -25.92861 -24.51890 -23.89035 -23.28108 -22.04820 -21.78401 -21.33312 -19.15021 -19.11994 -18.31670 -17.77162 -17.47746 -16.81941 -16.68920 -16.65941 -16.26664 -16.00476 -15.42917 -15.34296 -15.24281 -15.07201 -14.86553 -14.55192 -14.22199 -14.17559 -13.99062 -13.92466 -13.31341 -13.17193 -13.00457 -12.88173 -12.86524 -12.84655 -12.76013 -12.43691 -12.32396 -12.22826 -12.15882 -11.87952 -11.78719 -11.47321 -11.37276 -10.93980 -10.84729 -10.64089 -10.33138 -9.96291 -9.35418 -9.01467 -7.96680 -5.25959 0.11165 0.31554 1.46394 1.48519 1.57207 1.79900 2.22114 2.29609 2.55185 2.84234 3.33969 3.36444 3.62491 3.65900 3.73605 3.94926 4.04708 4.07692 4.11249 4.18497 4.32295 4.32925 4.37847 4.39532 4.44656 4.54770 4.60559 4.62493 4.66585 4.68077 4.73845 4.81804 4.89356 4.94731 4.98190 5.01103 5.04370 5.10913 5.16792 5.28282 5.34439 5.46232 5.47367 5.53140 5.54356 5.68554 6.19882 6.26244 6.70445 7.05001 7.31900 7.42824 8.08543 8.32337 9.26840 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013265 B = 0.001745 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.260627 B =16037.945952 C =17478.271273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.325 6.325 3 C 0.065 3.935 4 C -0.117 4.117 5 C -0.118 4.118 6 C 0.083 3.917 7 C -0.085 4.085 8 C 0.514 3.486 9 O -0.575 6.575 10 N -0.715 5.715 11 C 0.145 3.855 12 H 0.058 0.942 13 C -0.155 4.155 14 C -0.115 4.115 15 C -0.104 4.104 16 C -0.112 4.112 17 C 0.148 3.852 18 N -0.748 5.748 19 C -0.252 4.252 20 H 0.073 0.927 21 C -0.076 4.076 22 N -0.968 5.968 23 Si 0.976 3.024 24 H -0.284 1.284 25 H -0.293 1.293 26 H -0.271 1.271 27 N -0.460 5.460 28 C 0.004 3.996 29 H 0.126 0.874 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.165 0.835 33 H 0.180 0.820 34 H 0.124 0.876 35 H 0.150 0.850 36 H 0.415 0.585 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.049 0.951 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.010 0.990 47 H 0.019 0.981 48 H 0.374 0.626 49 H 0.252 0.748 50 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.307 -33.045 -5.914 34.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C 0.017 3.983 4 C -0.143 4.143 5 C -0.137 4.137 6 C -0.056 4.056 7 C -0.124 4.124 8 C 0.301 3.699 9 O -0.454 6.454 10 N -0.368 5.368 11 C 0.041 3.959 12 H 0.077 0.923 13 C -0.213 4.213 14 C -0.153 4.153 15 C -0.142 4.142 16 C -0.149 4.149 17 C 0.021 3.979 18 N -0.391 5.391 19 C -0.383 4.383 20 H 0.091 0.909 21 C -0.268 4.268 22 N -0.619 5.619 23 Si 0.804 3.196 24 H -0.211 1.211 25 H -0.219 1.219 26 H -0.196 1.196 27 N -0.169 5.169 28 C -0.154 4.154 29 H 0.144 0.856 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.182 0.818 33 H 0.197 0.803 34 H 0.142 0.858 35 H 0.168 0.832 36 H 0.252 0.748 37 H 0.059 0.941 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.028 0.972 47 H 0.037 0.963 48 H 0.206 0.794 49 H 0.061 0.939 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.146 -32.873 -6.320 34.229 hybrid contribution -0.297 0.469 0.692 0.887 sum 6.849 -32.404 -5.628 33.595 Atomic orbital electron populations 1.23377 0.76348 1.05967 1.02157 1.86044 1.23441 1.25731 1.88500 1.20275 0.94070 0.85752 0.98212 1.21272 0.91466 0.99945 1.01623 1.22179 1.02893 0.90646 0.97981 1.20926 0.89045 0.95996 0.99657 1.20678 1.03078 0.90483 0.98207 1.20841 0.80782 0.82125 0.86133 1.90708 1.34850 1.70705 1.49145 1.46016 1.46362 1.13550 1.30884 1.20867 0.97864 0.90880 0.86322 0.92336 1.22091 1.01039 1.01046 0.97124 1.21830 1.01213 0.93443 0.98810 1.21412 0.99761 0.94161 0.98890 1.21598 0.99456 0.96909 0.96985 1.20856 0.96830 0.84165 0.96011 1.42621 1.52699 1.05168 1.38623 1.19663 1.18239 0.92418 1.08016 0.90943 1.25606 1.01801 0.96828 1.02581 1.69813 1.43123 1.05268 1.43701 0.85106 0.78433 0.77237 0.78776 1.21102 1.21901 1.19641 1.67255 1.13117 1.27400 1.09162 1.23044 1.01157 0.87192 1.04023 0.85629 0.91701 0.92209 0.81767 0.80277 0.85822 0.83225 0.74833 0.94129 0.91022 0.90788 0.89432 0.89945 0.93170 0.91372 0.91603 0.92580 0.97184 0.96341 0.79383 0.93886 0.82095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.82 113.37 1.11 1.27 16 2 O -0.32 -5.36 10.51 -92.55 -0.97 -6.33 16 3 C 0.06 1.21 6.71 22.60 0.15 1.36 16 4 C -0.12 -1.76 10.13 22.56 0.23 -1.53 16 5 C -0.12 -1.60 9.70 22.35 0.22 -1.38 16 6 C 0.08 1.60 5.76 42.56 0.25 1.85 16 7 C -0.08 -1.16 6.10 29.10 0.18 -0.98 16 8 C 0.51 10.84 7.73 87.66 0.68 11.51 16 9 O -0.58 -18.03 14.99 -3.03 -0.05 -18.08 16 10 N -0.71 -11.69 4.53 -442.52 -2.00 -13.69 16 11 C 0.15 2.75 2.57 44.99 0.12 2.87 16 12 H 0.06 1.47 7.58 -2.39 -0.02 1.46 16 13 C -0.15 -2.57 9.48 71.98 0.68 -1.89 16 14 C -0.12 -2.05 4.75 30.59 0.15 -1.90 16 15 C -0.10 -2.47 5.10 30.59 0.16 -2.32 16 16 C -0.11 -3.46 5.33 30.59 0.16 -3.30 16 17 C 0.15 6.12 6.26 86.38 0.54 6.66 16 18 N -0.75 -39.57 5.60 -343.48 -1.92 -41.49 16 19 C -0.25 -14.58 9.99 84.03 0.84 -13.74 16 20 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 21 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 22 N -0.97 -60.07 13.06 21.65 0.28 -59.79 16 23 Si 0.98 46.86 29.55 68.60 2.03 48.89 16 24 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 25 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 26 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 27 N -0.46 -11.71 9.21 -183.49 -1.69 -13.40 16 28 C 0.00 0.09 10.22 84.80 0.87 0.95 16 29 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.54 7.67 -2.39 -0.02 0.53 16 31 H 0.06 0.57 7.69 -2.39 -0.02 0.55 16 32 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.18 0.91 7.95 -2.91 -0.02 0.89 16 34 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.15 0.70 7.87 -2.38 -0.02 0.68 16 36 H 0.41 4.28 8.60 -92.71 -0.80 3.48 16 37 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.07 1.53 7.75 -2.39 -0.02 1.51 16 44 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 45 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 46 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 47 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.37 20.73 7.67 -92.70 -0.71 20.02 16 49 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 50 H 0.16 2.96 6.32 -2.91 -0.02 2.94 16 Total: -1.00 -82.32 414.94 1.89 -80.43 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: -0.57 Total: 28.03 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 6.79 Total: -4.56 kcal Atomic # 7 Polarization: -123.04 SS G_CDS: -5.34 Total: -128.38 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -1.02 Total: -24.41 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -82.32 1.89 -80.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174897639.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.455 kcal (2) G-P(sol) polarization free energy of solvation -82.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds