Wall clock time and date at job start Tue Mar 31 2020 18:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35918 * 116.99902 * 2 1 4 4 C 1.39137 * 120.47406 * 179.97438 * 3 2 1 5 5 C 1.38538 * 118.37128 * 179.75187 * 4 3 2 6 6 C 1.38247 * 119.22045 * 0.53263 * 5 4 3 7 7 C 1.50707 * 119.55733 * 179.73058 * 6 5 4 8 8 C 1.50695 * 109.47011 * 124.72666 * 7 6 5 9 9 O 1.21274 * 120.00413 * 0.27295 * 8 7 6 10 10 N 1.34784 * 119.99635 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.46956 * 325.00197 * 11 10 8 13 13 C 1.52995 * 109.47022 * 84.99732 * 11 10 8 14 14 C 1.52999 * 109.47155 * 205.00183 * 11 10 8 15 15 C 1.52999 * 109.47222 * 64.99979 * 14 11 10 16 16 C 1.53004 * 109.46735 * 180.02562 * 15 14 11 17 17 C 1.52999 * 109.46735 * 180.02562 * 16 15 14 18 18 N 1.46503 * 109.47164 * 180.02562 * 17 16 15 19 19 C 1.36933 * 120.00033 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00460 * 359.97438 * 19 18 17 21 21 C 1.38814 * 119.99809 * 180.02562 * 19 18 17 22 22 N 1.31615 * 119.99921 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99997 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47265 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47677 * 119.99641 * 23 21 19 26 26 H 1.48500 * 109.47252 * 240.00167 * 23 21 19 27 27 N 1.31842 * 120.89100 * 359.45197 * 6 5 4 28 28 C 1.31843 * 121.78023 * 0.27691 * 27 6 5 29 29 H 1.08999 * 109.47562 * 60.00339 * 1 2 3 30 30 H 1.08999 * 109.46852 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47537 * 299.99582 * 1 2 3 32 32 H 1.07998 * 120.81164 * 0.02562 * 4 3 2 33 33 H 1.07997 * 120.38534 * 180.25641 * 5 4 3 34 34 H 1.09005 * 109.46877 * 4.72539 * 7 6 5 35 35 H 1.09002 * 109.46993 * 244.72886 * 7 6 5 36 36 H 0.96999 * 120.00044 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.47831 * 300.00098 * 13 11 10 38 38 H 1.08996 * 109.47227 * 60.00172 * 13 11 10 39 39 H 1.09005 * 109.47314 * 180.02562 * 13 11 10 40 40 H 1.09002 * 109.46897 * 185.00130 * 14 11 10 41 41 H 1.08995 * 109.47110 * 304.99454 * 14 11 10 42 42 H 1.09001 * 109.46785 * 299.99862 * 15 14 11 43 43 H 1.09002 * 109.47226 * 59.99951 * 15 14 11 44 44 H 1.09001 * 109.47302 * 299.99460 * 16 15 14 45 45 H 1.08998 * 109.46952 * 60.00171 * 16 15 14 46 46 H 1.09002 * 109.47308 * 299.99814 * 17 16 15 47 47 H 1.09002 * 109.47226 * 59.99866 * 17 16 15 48 48 H 0.97000 * 119.99816 * 359.97438 * 18 17 16 49 49 H 0.97009 * 119.99863 * 180.02562 * 22 21 19 50 50 H 1.07998 * 119.66324 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 3.4348 1.2954 0.0005 5 6 4.0181 2.5520 -0.0048 6 6 3.2078 3.6721 0.0008 7 6 3.8342 5.0428 0.0013 8 6 3.3022 5.8386 -1.1626 9 8 2.4904 5.3435 -1.9152 10 7 3.7251 7.1024 -1.3642 11 6 3.2084 7.8759 -2.4960 12 1 3.0432 7.2120 -3.3446 13 6 1.8864 8.5370 -2.1008 14 6 4.2226 8.9544 -2.8822 15 6 5.5020 8.2908 -3.3958 16 6 6.5164 9.3694 -3.7813 17 6 7.7956 8.7059 -4.2955 18 7 8.7672 9.7386 -4.6641 19 6 9.9946 9.3801 -5.1541 20 1 10.2466 8.3362 -5.2685 21 6 10.9154 10.3586 -5.5028 22 7 10.6085 11.6308 -5.3630 23 14 12.5900 9.8698 -6.1706 24 1 12.6864 8.3890 -6.2298 25 1 12.7629 10.4323 -7.5340 26 1 13.6525 10.3991 -5.2783 27 7 1.8944 3.5575 0.0003 28 6 1.3001 2.3805 -0.0001 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.0432 0.4031 0.0005 33 1 5.0931 2.6553 -0.0087 34 1 4.9164 4.9477 -0.0879 35 1 3.5899 5.5537 0.9327 36 1 4.3720 7.4996 -0.7604 37 1 1.1638 7.7687 -1.8258 38 1 2.0516 9.2009 -1.2523 39 1 1.5017 9.1122 -2.9431 40 1 3.8014 9.5857 -3.6645 41 1 4.4548 9.5641 -2.0090 42 1 5.9231 7.6595 -2.6134 43 1 5.2698 7.6811 -4.2690 44 1 6.0956 10.0011 -4.5636 45 1 6.7486 9.9787 -2.9078 46 1 8.2167 8.0739 -3.5136 47 1 7.5631 8.0968 -5.1691 48 1 8.5407 10.6762 -4.5617 49 1 11.2518 12.3147 -5.6070 50 1 0.2215 2.3264 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174897640.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:55 Heat of formation + Delta-G solvation = -72.899289 kcal Electronic energy + Delta-G solvation = -27529.620668 eV Core-core repulsion = 23555.838878 eV Total energy + Delta-G solvation = -3973.781790 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.74891 -40.67946 -39.12917 -37.94074 -36.76341 -34.72816 -33.62600 -33.39071 -32.75291 -31.54309 -29.02000 -28.78722 -28.01909 -25.92190 -24.52304 -23.88122 -23.28035 -22.03476 -21.78113 -21.33556 -19.15096 -19.11104 -18.31758 -17.75635 -17.48875 -16.82177 -16.68601 -16.67155 -16.24725 -15.98624 -15.42202 -15.29035 -15.18759 -15.06931 -14.99761 -14.57172 -14.19630 -14.09346 -14.02048 -13.94673 -13.33259 -13.14625 -12.93833 -12.93263 -12.88480 -12.83897 -12.75862 -12.44038 -12.31307 -12.22870 -12.09961 -11.87143 -11.77873 -11.46095 -11.36311 -10.93915 -10.85278 -10.64482 -10.35044 -9.96346 -9.35395 -9.00301 -7.96004 -5.25035 0.10653 0.30276 1.47469 1.48466 1.58729 1.80033 2.22184 2.29383 2.55929 2.83621 3.32971 3.37658 3.63212 3.65712 3.73155 3.93771 4.06779 4.08344 4.11418 4.19131 4.32377 4.33897 4.38144 4.39117 4.45210 4.55358 4.59920 4.63285 4.67351 4.68050 4.73632 4.82218 4.90401 4.95306 4.97805 5.01744 5.05178 5.11231 5.17506 5.29215 5.34593 5.47653 5.48785 5.52552 5.55665 5.68696 6.20461 6.27120 6.70362 7.02743 7.32837 7.42657 8.09887 8.33075 9.27827 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014871 B = 0.001708 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.369994 B =16393.691812 C =17870.655710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.065 3.935 4 C -0.119 4.119 5 C -0.121 4.121 6 C 0.084 3.916 7 C -0.084 4.084 8 C 0.515 3.485 9 O -0.575 6.575 10 N -0.715 5.715 11 C 0.147 3.853 12 H 0.061 0.939 13 C -0.156 4.156 14 C -0.116 4.116 15 C -0.104 4.104 16 C -0.113 4.113 17 C 0.148 3.852 18 N -0.749 5.749 19 C -0.250 4.250 20 H 0.074 0.926 21 C -0.076 4.076 22 N -0.969 5.969 23 Si 0.975 3.025 24 H -0.267 1.267 25 H -0.293 1.293 26 H -0.290 1.290 27 N -0.455 5.455 28 C 0.006 3.994 29 H 0.060 0.940 30 H 0.124 0.876 31 H 0.067 0.933 32 H 0.161 0.839 33 H 0.174 0.826 34 H 0.143 0.857 35 H 0.131 0.869 36 H 0.415 0.585 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.021 0.979 47 H 0.011 0.989 48 H 0.374 0.626 49 H 0.252 0.748 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.923 -19.359 17.159 33.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.017 3.983 4 C -0.145 4.145 5 C -0.141 4.141 6 C -0.055 4.055 7 C -0.124 4.124 8 C 0.301 3.699 9 O -0.454 6.454 10 N -0.368 5.368 11 C 0.042 3.958 12 H 0.079 0.921 13 C -0.214 4.214 14 C -0.153 4.153 15 C -0.142 4.142 16 C -0.150 4.150 17 C 0.021 3.979 18 N -0.392 5.392 19 C -0.381 4.381 20 H 0.092 0.908 21 C -0.268 4.268 22 N -0.620 5.620 23 Si 0.804 3.196 24 H -0.191 1.191 25 H -0.220 1.220 26 H -0.217 1.217 27 N -0.165 5.165 28 C -0.152 4.152 29 H 0.078 0.922 30 H 0.142 0.858 31 H 0.086 0.914 32 H 0.179 0.821 33 H 0.192 0.808 34 H 0.161 0.839 35 H 0.149 0.851 36 H 0.252 0.748 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.039 0.961 47 H 0.029 0.971 48 H 0.206 0.794 49 H 0.061 0.939 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -22.828 -19.311 16.567 34.183 hybrid contribution 1.188 -0.161 -0.428 1.273 sum -21.640 -19.472 16.139 33.286 Atomic orbital electron populations 1.23389 0.76254 1.05976 1.02263 1.86053 1.23557 1.25748 1.88487 1.20262 0.93915 0.85900 0.98192 1.21252 0.91702 0.99825 1.01706 1.22172 1.02826 0.90928 0.98133 1.20889 0.89113 0.95849 0.99655 1.20666 1.02856 0.90467 0.98427 1.20829 0.80842 0.81952 0.86234 1.90707 1.34880 1.71112 1.48670 1.46017 1.46496 1.13514 1.30788 1.20857 0.93645 0.92510 0.88812 0.92068 1.22097 0.96341 1.00339 1.02651 1.21827 0.93912 0.97044 1.02556 1.21414 0.94559 0.97224 1.00970 1.21603 0.94224 0.98513 1.00698 1.20868 0.89532 0.91365 0.96093 1.42640 1.13797 1.05080 1.77661 1.19711 0.92062 0.92705 1.33671 0.90790 1.25597 1.02534 0.95270 1.03425 1.69824 1.36574 0.99606 1.56003 0.85049 0.79562 0.77799 0.77199 1.19112 1.21964 1.21730 1.67253 1.12793 1.27271 1.09160 1.23076 1.01219 0.87048 1.03842 0.92162 0.85751 0.91412 0.82093 0.80832 0.83912 0.85148 0.74829 0.94290 0.91072 0.90965 0.90024 0.89603 0.91045 0.92969 0.92722 0.91706 0.96107 0.97075 0.79446 0.93932 0.81656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.82 113.37 1.11 1.25 16 2 O -0.33 -5.34 10.51 -92.63 -0.97 -6.31 16 3 C 0.06 1.21 6.71 22.60 0.15 1.36 16 4 C -0.12 -1.92 10.13 22.56 0.23 -1.69 16 5 C -0.12 -1.83 9.70 22.34 0.22 -1.61 16 6 C 0.08 1.63 5.77 42.56 0.25 1.87 16 7 C -0.08 -1.15 6.10 29.10 0.18 -0.97 16 8 C 0.51 10.79 7.73 87.65 0.68 11.47 16 9 O -0.57 -17.92 14.99 -3.01 -0.05 -17.97 16 10 N -0.71 -11.62 4.53 -442.54 -2.00 -13.63 16 11 C 0.15 2.76 2.57 44.99 0.12 2.87 16 12 H 0.06 1.50 7.58 -2.38 -0.02 1.48 16 13 C -0.16 -2.75 9.48 71.98 0.68 -2.06 16 14 C -0.12 -2.02 4.75 30.59 0.15 -1.87 16 15 C -0.10 -2.33 5.10 30.60 0.16 -2.18 16 16 C -0.11 -3.39 5.33 30.60 0.16 -3.23 16 17 C 0.15 5.94 6.26 86.38 0.54 6.48 16 18 N -0.75 -39.00 5.60 -343.45 -1.92 -40.93 16 19 C -0.25 -14.27 9.99 84.03 0.84 -13.43 16 20 H 0.07 4.08 7.83 -2.91 -0.02 4.05 16 21 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 22 N -0.97 -59.79 13.06 21.65 0.28 -59.50 16 23 Si 0.98 46.40 29.55 68.60 2.03 48.43 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 27 N -0.46 -10.98 9.21 -183.49 -1.69 -12.67 16 28 C 0.01 0.13 10.22 84.80 0.87 1.00 16 29 H 0.06 0.51 7.68 -2.39 -0.02 0.49 16 30 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.46 7.68 -2.39 -0.02 0.44 16 32 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.17 1.38 7.94 -2.91 -0.02 1.35 16 34 H 0.14 0.96 7.87 -2.38 -0.02 0.94 16 35 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.41 4.25 8.60 -92.71 -0.80 3.45 16 37 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.47 7.75 -2.39 -0.02 1.45 16 43 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.37 20.49 7.67 -92.71 -0.71 19.78 16 49 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 50 H 0.17 2.69 6.32 -2.91 -0.02 2.68 16 Total: -1.00 -80.98 414.93 1.89 -79.09 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: -0.57 Total: 28.19 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 6.79 Total: -4.70 kcal Atomic # 7 Polarization: -121.39 SS G_CDS: -5.34 Total: -126.73 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -1.02 Total: -24.28 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -80.98 1.89 -79.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174897640.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.194 kcal (2) G-P(sol) polarization free energy of solvation -80.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds