Wall clock time and date at job start Tue Mar 31 2020 18:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 5 5 C 1.53000 * 109.47152 * 185.00354 * 4 2 1 6 6 C 1.53000 * 109.47214 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47214 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.47067 * 179.97438 * 7 6 5 9 9 C 1.36936 * 119.99988 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99998 * 0.02562 * 9 8 7 11 11 C 1.38807 * 120.00312 * 179.97438 * 9 8 7 12 12 N 1.31627 * 119.99750 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00205 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47300 * 60.00051 * 13 11 9 15 15 H 1.48503 * 109.46856 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46911 * 299.99734 * 13 11 9 17 17 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 18 18 C 1.34777 * 120.00258 * 85.00009 * 17 2 1 19 19 O 1.21279 * 120.00166 * 359.97438 * 18 17 2 20 20 C 1.50706 * 119.99762 * 179.97438 * 18 17 2 21 21 C 1.53002 * 109.46925 * 179.97438 * 20 18 17 22 22 C 1.50696 * 109.47300 * 180.02562 * 21 20 18 23 23 C 1.38834 * 120.35560 * 89.99636 * 22 21 20 24 24 C 1.38374 * 118.48304 * 179.97438 * 23 22 21 25 25 C 1.38917 * 119.11575 * 359.97438 * 24 23 22 26 26 O 1.35676 * 119.68758 * 179.97438 * 25 24 23 27 27 N 1.32250 * 120.63037 * 0.02562 * 25 24 23 28 28 C 1.31971 * 121.64334 * 359.68691 * 27 25 24 29 29 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 30 30 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 32 32 H 1.08994 * 109.47690 * 305.00545 * 4 2 1 33 33 H 1.09003 * 109.47048 * 65.00365 * 4 2 1 34 34 H 1.09004 * 109.46980 * 300.00055 * 5 4 2 35 35 H 1.08995 * 109.47311 * 60.00363 * 5 4 2 36 36 H 1.09004 * 109.46768 * 299.99665 * 6 5 4 37 37 H 1.09003 * 109.47442 * 59.99732 * 6 5 4 38 38 H 1.08994 * 109.47015 * 299.99550 * 7 6 5 39 39 H 1.09003 * 109.47135 * 59.99545 * 7 6 5 40 40 H 0.97001 * 119.99987 * 0.02562 * 8 7 6 41 41 H 0.96997 * 119.99903 * 180.02562 * 12 11 9 42 42 H 0.96999 * 119.99694 * 264.99399 * 17 2 1 43 43 H 1.09000 * 109.47318 * 299.99141 * 20 18 17 44 44 H 1.09000 * 109.47161 * 59.99772 * 20 18 17 45 45 H 1.09004 * 109.46930 * 299.99901 * 21 20 18 46 46 H 1.09004 * 109.47059 * 59.99503 * 21 20 18 47 47 H 1.08003 * 120.75586 * 0.02562 * 23 22 21 48 48 H 1.08005 * 120.44230 * 180.02562 * 24 23 22 49 49 H 0.96696 * 113.99751 * 90.00319 * 26 25 24 50 50 H 1.08004 * 119.58123 * 180.31344 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3137 6 6 4.0749 -1.3347 2.5627 7 6 5.5997 -1.2261 2.6275 8 7 6.0880 -1.9167 3.8237 9 6 7.4300 -1.9529 4.0935 10 1 8.1285 -1.4721 3.4245 11 6 7.8928 -2.6067 5.2271 12 7 7.0415 -3.1922 6.0427 13 14 9.7235 -2.6555 5.5954 14 1 10.2351 -1.2697 5.7466 15 1 9.9552 -3.4094 6.8537 16 1 10.4353 -3.3270 4.4785 17 7 2.0183 -0.6906 -1.1962 18 6 2.1471 -0.0182 -2.3571 19 8 1.8582 1.1584 -2.4118 20 6 2.6500 -0.7286 -3.5874 21 6 2.7007 0.2543 -4.7589 22 6 3.2030 -0.4561 -5.9893 23 6 2.3117 -1.0767 -6.8541 24 6 2.8151 -1.7173 -7.9726 25 6 4.1869 -1.7173 -8.1915 26 8 4.6931 -2.3423 -9.2842 27 7 5.0044 -1.1147 -7.3443 28 6 4.5537 -0.4910 -6.2722 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6054 -0.2617 2.1370 33 1 1.7517 -1.7714 1.2056 34 1 3.9995 -1.0726 0.4260 35 1 3.8531 0.4372 1.3574 36 1 3.6403 -0.8755 3.4506 37 1 3.7866 -2.3850 2.5187 38 1 6.0346 -1.6850 1.7397 39 1 5.8876 -0.1758 2.6717 40 1 5.4607 -2.3488 4.4243 41 1 7.3648 -3.6488 6.8351 42 1 2.2491 -1.6317 -1.1525 43 1 3.6494 -1.1203 -3.3979 44 1 1.9778 -1.5509 -3.8325 45 1 1.7012 0.6457 -4.9483 46 1 3.3726 1.0770 -4.5140 47 1 1.2497 -1.0592 -6.6587 48 1 2.1502 -2.2099 -8.6667 49 1 4.7660 -1.7744 -10.0634 50 1 5.2508 -0.0055 -5.6052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174912404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:27 Heat of formation + Delta-G solvation = -62.278238 kcal Electronic energy + Delta-G solvation = -27179.911968 eV Core-core repulsion = 23206.590742 eV Total energy + Delta-G solvation = -3973.321227 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.98073 -40.08986 -37.78331 -37.05881 -35.29562 -34.49951 -33.27348 -32.60590 -31.63876 -30.40779 -29.48694 -27.45996 -25.40657 -24.21520 -24.16191 -22.55307 -21.93894 -20.90247 -20.68220 -20.56913 -19.28205 -17.54232 -17.41904 -17.00413 -16.49789 -16.43625 -15.74452 -15.52299 -15.05952 -14.77798 -14.69758 -14.20579 -14.03006 -13.84538 -13.68016 -13.60509 -13.40054 -13.15371 -12.96696 -12.83974 -12.53624 -12.39207 -12.32580 -12.04180 -11.78137 -11.52928 -11.44903 -11.27065 -11.00245 -10.78912 -10.71492 -10.43798 -10.36838 -10.31215 -10.07547 -9.99822 -9.84217 -9.65537 -9.25987 -9.21237 -8.84367 -6.89394 -5.74320 -3.02775 0.48736 0.74274 2.41911 2.90705 3.03608 3.36769 3.45760 3.49641 3.51024 4.13532 4.24369 4.41568 4.45801 4.48662 4.54285 4.64761 4.72018 4.78123 4.89681 4.96538 4.97306 5.12999 5.20581 5.23495 5.38640 5.41221 5.43007 5.48320 5.54950 5.60578 5.66297 5.68864 5.77530 5.81562 5.87847 5.93504 6.05114 6.08581 6.21631 6.29989 6.36972 6.38910 6.46321 6.89818 6.93805 7.00902 7.27946 7.46693 7.71477 8.00519 8.45099 9.55703 10.14898 10.49444 11.48665 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009361 B = 0.001813 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.277928 B =15442.538985 C =17972.282019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.088 0.912 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.723 5.723 18 C 0.514 3.486 19 O -0.543 6.543 20 C -0.138 4.138 21 C -0.059 4.059 22 C -0.143 4.143 23 C -0.057 4.057 24 C -0.184 4.184 25 C 0.303 3.697 26 O -0.484 6.484 27 N -0.501 5.501 28 C 0.129 3.871 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.401 0.599 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.140 0.860 48 H 0.141 0.859 49 H 0.400 0.600 50 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.933 5.242 -28.413 33.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.106 0.894 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.371 4.371 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.374 5.374 18 C 0.301 3.699 19 O -0.420 6.420 20 C -0.178 4.178 21 C -0.097 4.097 22 C -0.145 4.145 23 C -0.083 4.083 24 C -0.205 4.205 25 C 0.125 3.875 26 O -0.291 6.291 27 N -0.219 5.219 28 C -0.028 4.028 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.216 0.784 41 H 0.065 0.935 42 H 0.236 0.764 43 H 0.116 0.884 44 H 0.112 0.888 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.158 0.842 48 H 0.158 0.842 49 H 0.258 0.742 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.045 5.573 -28.310 33.015 hybrid contribution 0.096 -0.462 0.298 0.558 sum -15.949 5.112 -28.012 32.637 Atomic orbital electron populations 1.22170 0.95445 1.02020 1.02448 1.21045 0.93689 0.97745 0.83959 0.89351 1.21941 0.96904 1.00922 0.96754 1.21515 0.93924 1.01081 0.98643 1.21729 0.97272 1.00252 0.97114 1.20648 0.90991 0.95328 0.90561 1.42378 1.05323 1.64962 1.25206 1.19213 0.83937 1.28465 1.05466 0.91279 1.24752 0.97744 1.00966 0.97701 1.69655 1.32855 1.40773 1.15096 0.86249 0.85097 0.77480 0.77269 1.21266 1.21671 1.21272 1.46153 1.67297 1.14207 1.09788 1.20600 0.77385 0.87336 0.84625 1.90708 1.50155 1.16024 1.85124 1.21691 1.03795 0.99585 0.92778 1.20237 1.03290 0.96818 0.89355 1.20952 0.94820 1.00557 0.98195 1.21464 1.00540 0.93846 0.92410 1.22122 0.95281 1.02586 1.00471 1.19231 0.87550 0.91694 0.89071 1.84793 1.86159 1.38112 1.20006 1.67208 1.40935 1.08806 1.04921 1.22533 0.93449 0.94129 0.92647 0.92342 0.92535 0.91535 0.90238 0.91367 0.92146 0.91997 0.92064 0.92144 0.96649 0.96584 0.78357 0.93507 0.76444 0.88391 0.88792 0.89807 0.89465 0.84217 0.84163 0.74242 0.82053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.48 37.16 0.35 -0.98 16 2 C 0.14 1.26 2.57 -67.94 -0.17 1.09 16 3 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 4 C -0.13 -1.18 4.75 -26.73 -0.13 -1.31 16 5 C -0.11 -1.35 5.10 -26.73 -0.14 -1.48 16 6 C -0.13 -1.97 5.33 -26.73 -0.14 -2.11 16 7 C 0.15 3.12 6.26 -4.04 -0.03 3.10 16 8 N -0.73 -19.19 5.60 -59.91 -0.34 -19.52 16 9 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 10 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 11 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 12 N -0.93 -28.71 13.06 55.49 0.72 -27.99 16 13 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 N -0.72 -5.77 4.53 -53.81 -0.24 -6.02 16 18 C 0.51 4.64 7.79 -10.98 -0.09 4.55 16 19 O -0.54 -6.91 15.65 5.56 0.09 -6.82 16 20 C -0.14 -0.83 5.68 -27.88 -0.16 -0.98 16 21 C -0.06 -0.37 4.66 -27.88 -0.13 -0.50 16 22 C -0.14 -0.92 5.15 -104.48 -0.54 -1.46 16 23 C -0.06 -0.32 9.85 -39.31 -0.39 -0.71 16 24 C -0.18 -1.16 10.04 -39.28 -0.39 -1.55 16 25 C 0.30 2.58 7.74 -17.12 -0.13 2.45 16 26 O -0.48 -3.61 13.56 -18.73 -0.25 -3.87 16 27 N -0.50 -4.98 10.39 -13.33 -0.14 -5.12 16 28 C 0.13 1.02 10.85 -17.56 -0.19 0.83 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.69 7.75 -51.93 -0.40 0.29 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.38 10.42 7.67 -40.82 -0.31 10.11 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.40 2.44 8.60 -40.82 -0.35 2.09 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.54 8.05 -51.93 -0.42 0.12 16 46 H 0.09 0.60 8.05 -51.93 -0.42 0.19 16 47 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 48 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 49 H 0.40 0.94 9.06 45.56 0.41 1.35 16 50 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 419.20 15.07 6.32 6.32 Total: -1.00 -36.72 419.20 -9.15 -45.88 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.77 Total: 6.08 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -2.52 Total: -6.68 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 0.01 Total: -58.65 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -0.17 Total: -10.68 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -36.72 -9.15 -45.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174912404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.401 kcal (2) G-P(sol) polarization free energy of solvation -36.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds