Wall clock time and date at job start Tue Mar 31 2020 18:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 5 5 C 1.53000 * 109.47152 * 185.00354 * 4 2 1 6 6 C 1.53000 * 109.47214 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47214 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.47067 * 179.97438 * 7 6 5 9 9 C 1.36936 * 119.99988 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99998 * 0.02562 * 9 8 7 11 11 C 1.38807 * 120.00312 * 179.97438 * 9 8 7 12 12 N 1.31627 * 119.99750 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00205 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47300 * 60.00051 * 13 11 9 15 15 H 1.48503 * 109.46856 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46911 * 299.99734 * 13 11 9 17 17 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 18 18 C 1.34777 * 120.00258 * 85.00009 * 17 2 1 19 19 O 1.21279 * 120.00166 * 359.97438 * 18 17 2 20 20 C 1.50706 * 119.99762 * 179.97438 * 18 17 2 21 21 C 1.53002 * 109.46925 * 179.97438 * 20 18 17 22 22 C 1.50696 * 109.47300 * 180.02562 * 21 20 18 23 23 C 1.38834 * 120.35560 * 89.99636 * 22 21 20 24 24 C 1.38374 * 118.48304 * 179.97438 * 23 22 21 25 25 C 1.38917 * 119.11575 * 359.97438 * 24 23 22 26 26 O 1.35676 * 119.68758 * 179.97438 * 25 24 23 27 27 N 1.32250 * 120.63037 * 0.02562 * 25 24 23 28 28 C 1.31971 * 121.64334 * 359.68691 * 27 25 24 29 29 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 30 30 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 32 32 H 1.08994 * 109.47690 * 305.00545 * 4 2 1 33 33 H 1.09003 * 109.47048 * 65.00365 * 4 2 1 34 34 H 1.09004 * 109.46980 * 300.00055 * 5 4 2 35 35 H 1.08995 * 109.47311 * 60.00363 * 5 4 2 36 36 H 1.09004 * 109.46768 * 299.99665 * 6 5 4 37 37 H 1.09003 * 109.47442 * 59.99732 * 6 5 4 38 38 H 1.08994 * 109.47015 * 299.99550 * 7 6 5 39 39 H 1.09003 * 109.47135 * 59.99545 * 7 6 5 40 40 H 0.97001 * 119.99987 * 0.02562 * 8 7 6 41 41 H 0.96997 * 119.99903 * 180.02562 * 12 11 9 42 42 H 0.96999 * 119.99694 * 264.99399 * 17 2 1 43 43 H 1.09000 * 109.47318 * 299.99141 * 20 18 17 44 44 H 1.09000 * 109.47161 * 59.99772 * 20 18 17 45 45 H 1.09004 * 109.46930 * 299.99901 * 21 20 18 46 46 H 1.09004 * 109.47059 * 59.99503 * 21 20 18 47 47 H 1.08003 * 120.75586 * 0.02562 * 23 22 21 48 48 H 1.08005 * 120.44230 * 180.02562 * 24 23 22 49 49 H 0.96696 * 113.99751 * 90.00319 * 26 25 24 50 50 H 1.08004 * 119.58123 * 180.31344 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3137 6 6 4.0749 -1.3347 2.5627 7 6 5.5997 -1.2261 2.6275 8 7 6.0880 -1.9167 3.8237 9 6 7.4300 -1.9529 4.0935 10 1 8.1285 -1.4721 3.4245 11 6 7.8928 -2.6067 5.2271 12 7 7.0415 -3.1922 6.0427 13 14 9.7235 -2.6555 5.5954 14 1 10.2351 -1.2697 5.7466 15 1 9.9552 -3.4094 6.8537 16 1 10.4353 -3.3270 4.4785 17 7 2.0183 -0.6906 -1.1962 18 6 2.1471 -0.0182 -2.3571 19 8 1.8582 1.1584 -2.4118 20 6 2.6500 -0.7286 -3.5874 21 6 2.7007 0.2543 -4.7589 22 6 3.2030 -0.4561 -5.9893 23 6 2.3117 -1.0767 -6.8541 24 6 2.8151 -1.7173 -7.9726 25 6 4.1869 -1.7173 -8.1915 26 8 4.6931 -2.3423 -9.2842 27 7 5.0044 -1.1147 -7.3443 28 6 4.5537 -0.4910 -6.2722 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6054 -0.2617 2.1370 33 1 1.7517 -1.7714 1.2056 34 1 3.9995 -1.0726 0.4260 35 1 3.8531 0.4372 1.3574 36 1 3.6403 -0.8755 3.4506 37 1 3.7866 -2.3850 2.5187 38 1 6.0346 -1.6850 1.7397 39 1 5.8876 -0.1758 2.6717 40 1 5.4607 -2.3488 4.4243 41 1 7.3648 -3.6488 6.8351 42 1 2.2491 -1.6317 -1.1525 43 1 3.6494 -1.1203 -3.3979 44 1 1.9778 -1.5509 -3.8325 45 1 1.7012 0.6457 -4.9483 46 1 3.3726 1.0770 -4.5140 47 1 1.2497 -1.0592 -6.6587 48 1 2.1502 -2.2099 -8.6667 49 1 4.7660 -1.7744 -10.0634 50 1 5.2508 -0.0055 -5.6052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174912404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:26 Heat of formation + Delta-G solvation = -90.110179 kcal Electronic energy + Delta-G solvation = -27181.118852 eV Core-core repulsion = 23206.590742 eV Total energy + Delta-G solvation = -3974.528110 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.50910 -40.79733 -38.34224 -37.98090 -36.82258 -35.08126 -34.74759 -33.19960 -32.86163 -31.73127 -30.07628 -28.80341 -26.12236 -25.72243 -24.69663 -23.75022 -22.82144 -22.03497 -21.64605 -21.24865 -19.78564 -19.12543 -18.18611 -17.95184 -17.23354 -16.97914 -16.69045 -16.41972 -16.18157 -16.02014 -15.41228 -15.31614 -15.26754 -14.84578 -14.56080 -14.45009 -14.21655 -14.11320 -14.09400 -13.82715 -13.22147 -13.09334 -12.93202 -12.87345 -12.86429 -12.83278 -12.56561 -12.43694 -12.25813 -12.19901 -11.98578 -11.87606 -11.79235 -11.47918 -11.37543 -10.93343 -10.91514 -10.75576 -10.39239 -9.99080 -9.73339 -9.01725 -7.96815 -5.26105 -0.01736 0.25791 1.46255 1.49673 1.55929 1.73723 2.29546 2.55102 2.55912 2.85330 3.36234 3.59494 3.67223 3.76958 3.92825 4.00529 4.03217 4.06346 4.07718 4.14743 4.27772 4.31781 4.37622 4.45019 4.51279 4.61963 4.66133 4.69058 4.76962 4.82417 4.88923 4.94487 4.95914 5.00742 5.02642 5.03829 5.15890 5.19688 5.28172 5.33568 5.35193 5.45724 5.46787 5.53691 5.60854 5.66682 6.25968 6.62685 6.65369 6.95406 7.31646 7.35583 8.08556 8.31848 9.26459 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009361 B = 0.001813 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.277928 B =15442.538985 C =17972.282019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 H 0.066 0.934 4 C -0.117 4.117 5 C -0.104 4.104 6 C -0.113 4.113 7 C 0.148 3.852 8 N -0.749 5.749 9 C -0.252 4.252 10 H 0.073 0.927 11 C -0.076 4.076 12 N -0.969 5.969 13 Si 0.976 3.024 14 H -0.278 1.278 15 H -0.293 1.293 16 H -0.277 1.277 17 N -0.716 5.716 18 C 0.512 3.488 19 O -0.584 6.584 20 C -0.131 4.131 21 C -0.052 4.052 22 C -0.138 4.138 23 C -0.053 4.053 24 C -0.180 4.180 25 C 0.284 3.716 26 O -0.498 6.498 27 N -0.538 5.538 28 C 0.114 3.886 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.018 0.982 39 H 0.012 0.988 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.413 0.587 43 H 0.107 0.893 44 H 0.117 0.883 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.167 0.833 48 H 0.163 0.837 49 H 0.418 0.582 50 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.847 4.662 -29.402 34.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.039 3.961 3 H 0.084 0.916 4 C -0.155 4.155 5 C -0.142 4.142 6 C -0.151 4.151 7 C 0.021 3.979 8 N -0.392 5.392 9 C -0.384 4.384 10 H 0.091 0.909 11 C -0.269 4.269 12 N -0.619 5.619 13 Si 0.804 3.196 14 H -0.204 1.204 15 H -0.219 1.219 16 H -0.203 1.203 17 N -0.368 5.368 18 C 0.300 3.700 19 O -0.465 6.465 20 C -0.171 4.171 21 C -0.090 4.090 22 C -0.140 4.140 23 C -0.078 4.078 24 C -0.201 4.201 25 C 0.106 3.894 26 O -0.308 6.308 27 N -0.257 5.257 28 C -0.042 4.042 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.036 0.964 39 H 0.030 0.970 40 H 0.206 0.794 41 H 0.061 0.939 42 H 0.250 0.750 43 H 0.125 0.875 44 H 0.135 0.865 45 H 0.102 0.898 46 H 0.094 0.906 47 H 0.185 0.815 48 H 0.180 0.820 49 H 0.278 0.722 50 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -16.959 4.996 -29.343 34.258 hybrid contribution 0.363 -0.244 0.549 0.702 sum -16.596 4.752 -28.795 33.573 Atomic orbital electron populations 1.22104 0.94488 1.02741 1.02125 1.20911 0.94356 0.96653 0.84217 0.91575 1.21839 0.94680 1.01939 0.97038 1.21417 0.95836 1.00069 0.96890 1.21606 0.93699 1.00933 0.98820 1.20864 0.94291 0.94244 0.88463 1.42621 1.04497 1.65375 1.26667 1.19627 0.85379 1.27877 1.05492 0.90888 1.25615 1.02288 1.01175 0.97793 1.69811 1.34751 1.41853 1.15503 0.85180 0.79789 0.77656 0.76950 1.20410 1.21865 1.20298 1.46122 1.66703 1.14736 1.09279 1.21107 0.76577 0.86885 0.85472 1.90695 1.52075 1.17915 1.85791 1.21688 1.04651 0.99668 0.91045 1.20142 1.02927 0.96551 0.89398 1.20927 0.94355 1.00421 0.98322 1.21800 1.01747 0.92684 0.91614 1.22344 0.94581 1.02242 1.00956 1.19535 0.88474 0.92088 0.89292 1.84739 1.86300 1.39093 1.20683 1.67160 1.42303 1.10204 1.06018 1.22723 0.94458 0.94419 0.92604 0.93637 0.91222 0.90932 0.89886 0.89864 0.91399 0.92709 0.92553 0.91892 0.96395 0.96960 0.79427 0.93903 0.75044 0.87482 0.86471 0.89791 0.90617 0.81508 0.81976 0.72176 0.81488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.48 71.98 0.68 -1.60 16 2 C 0.14 2.37 2.57 44.99 0.12 2.49 16 3 H 0.07 1.43 7.58 -2.39 -0.02 1.41 16 4 C -0.12 -1.92 4.75 30.59 0.15 -1.78 16 5 C -0.10 -2.30 5.10 30.59 0.16 -2.14 16 6 C -0.11 -3.40 5.33 30.59 0.16 -3.24 16 7 C 0.15 5.98 6.26 86.38 0.54 6.52 16 8 N -0.75 -39.23 5.60 -343.45 -1.92 -41.15 16 9 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 10 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 11 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 12 N -0.97 -59.93 13.06 21.65 0.28 -59.65 16 13 Si 0.98 46.69 29.55 68.60 2.03 48.72 16 14 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 15 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 17 N -0.72 -10.08 4.53 -442.54 -2.00 -12.08 16 18 C 0.51 8.54 7.79 87.66 0.68 9.23 16 19 O -0.58 -14.68 15.65 -3.03 -0.05 -14.73 16 20 C -0.13 -1.30 5.68 29.85 0.17 -1.13 16 21 C -0.05 -0.58 4.66 29.85 0.14 -0.44 16 22 C -0.14 -1.60 5.15 -19.77 -0.10 -1.70 16 23 C -0.05 -0.48 9.85 22.44 0.22 -0.26 16 24 C -0.18 -1.96 10.04 22.46 0.23 -1.73 16 25 C 0.28 4.69 7.74 84.79 0.66 5.34 16 26 O -0.50 -7.25 13.56 -89.94 -1.22 -8.47 16 27 N -0.54 -10.73 10.39 -308.95 -3.21 -13.94 16 28 C 0.11 1.77 10.85 84.63 0.92 2.69 16 29 H 0.04 0.79 8.14 -2.38 -0.02 0.78 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.41 7.75 -2.39 -0.02 1.39 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.37 20.58 7.67 -92.71 -0.71 19.86 16 41 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 42 H 0.41 3.89 8.60 -92.71 -0.80 3.09 16 43 H 0.11 0.91 8.14 -2.39 -0.02 0.90 16 44 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.08 0.96 8.05 -2.38 -0.02 0.94 16 46 H 0.08 1.03 8.05 -2.39 -0.02 1.01 16 47 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 48 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 49 H 0.42 1.83 9.06 -74.06 -0.67 1.16 16 50 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -79.43 419.20 -1.30 -80.73 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: -1.23 Total: 25.98 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 6.02 Total: -5.41 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -6.85 Total: -126.82 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -1.27 Total: -23.20 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -79.43 -1.30 -80.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174912404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.377 kcal (2) G-P(sol) polarization free energy of solvation -79.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds