Wall clock time and date at job start Tue Mar 31 2020 18:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.53009 * 109.46982 * 120.00047 * 2 1 3 5 5 C 1.52999 * 109.46875 * 185.00153 * 4 2 1 6 6 C 1.53005 * 109.46539 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46539 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.47044 * 179.97438 * 7 6 5 9 9 C 1.36941 * 120.00413 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99727 * 0.02562 * 9 8 7 11 11 C 1.38806 * 120.00200 * 180.02562 * 9 8 7 12 12 N 1.31624 * 120.00237 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99960 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47191 * 90.00419 * 13 11 9 15 15 H 1.48498 * 109.47023 * 210.00233 * 13 11 9 16 16 H 1.48502 * 109.47260 * 330.00232 * 13 11 9 17 17 N 1.46502 * 109.47227 * 239.99817 * 2 1 3 18 18 C 1.34774 * 119.99686 * 85.00307 * 17 2 1 19 19 O 1.21277 * 119.99994 * 359.97438 * 18 17 2 20 20 C 1.50699 * 119.99677 * 179.97438 * 18 17 2 21 21 H 1.08996 * 109.47418 * 60.00415 * 20 18 17 22 22 C 1.52994 * 109.47427 * 299.99604 * 20 18 17 23 23 O 1.42908 * 109.47023 * 180.02562 * 20 18 17 24 24 C 1.35913 * 116.99847 * 204.90104 * 23 20 18 25 25 C 1.39137 * 120.47559 * 354.50397 * 24 23 20 26 26 C 1.38535 * 118.37558 * 180.02562 * 25 24 23 27 27 C 1.38258 * 119.21963 * 359.97438 * 26 25 24 28 28 N 1.31842 * 120.88590 * 0.02562 * 27 26 25 29 29 C 1.31842 * 121.78307 * 359.70517 * 28 27 26 30 30 H 1.09002 * 109.46998 * 60.00586 * 1 2 3 31 31 H 1.09007 * 109.46567 * 179.97438 * 1 2 3 32 32 H 1.08989 * 109.47332 * 299.99947 * 1 2 3 33 33 H 1.09005 * 109.46724 * 305.00055 * 4 2 1 34 34 H 1.08995 * 109.47031 * 65.00313 * 4 2 1 35 35 H 1.08996 * 109.47131 * 300.00079 * 5 4 2 36 36 H 1.08995 * 109.47160 * 60.00240 * 5 4 2 37 37 H 1.09000 * 109.47275 * 299.99499 * 6 5 4 38 38 H 1.08995 * 109.47109 * 60.00318 * 6 5 4 39 39 H 1.09002 * 109.47568 * 300.00098 * 7 6 5 40 40 H 1.09006 * 109.47636 * 60.00265 * 7 6 5 41 41 H 0.97006 * 119.99969 * 0.02562 * 8 7 6 42 42 H 0.96996 * 120.00037 * 179.97438 * 12 11 9 43 43 H 0.97000 * 119.99842 * 264.99624 * 17 2 1 44 44 H 1.09001 * 109.47930 * 300.00616 * 22 20 18 45 45 H 1.09002 * 109.46844 * 60.00153 * 22 20 18 46 46 H 1.09005 * 109.47393 * 179.97438 * 22 20 18 47 47 H 1.08004 * 120.81105 * 359.97438 * 25 24 23 48 48 H 1.08004 * 120.38918 * 180.02562 * 26 25 24 49 49 H 1.08001 * 119.55386 * 179.97438 * 27 26 25 50 50 H 1.08002 * 119.65843 * 180.29216 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0747 -1.3341 2.5634 7 6 5.5995 -1.2266 2.6275 8 7 6.0878 -1.9162 3.8243 9 6 7.4299 -1.9533 4.0937 10 1 8.1285 -1.4738 3.4240 11 6 7.8925 -2.6071 5.2274 12 7 7.0412 -3.1919 6.0433 13 14 9.7233 -2.6570 5.5951 14 1 10.0938 -1.4823 6.4245 15 1 10.0462 -3.9050 6.3322 16 1 10.4852 -2.6234 4.3209 17 7 2.0184 -0.6906 -1.1962 18 6 2.1471 -0.0183 -2.3571 19 8 1.8583 1.1583 -2.4116 20 6 2.6501 -0.7286 -3.5874 21 1 1.9779 -1.5508 -3.8325 22 6 4.0527 -1.2785 -3.3213 23 8 2.6986 0.1898 -4.6812 24 6 2.6164 -0.3355 -5.9320 25 6 2.6056 -1.7142 -6.1190 26 6 2.5210 -2.2025 -7.4127 27 6 2.4500 -1.3111 -8.4672 28 7 2.4625 -0.0099 -8.2555 29 6 2.5366 0.4952 -7.0399 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6053 -0.2617 2.1370 34 1 1.7517 -1.7715 1.2056 35 1 3.9994 -1.0728 0.4260 36 1 3.8531 0.4369 1.3575 37 1 3.6400 -0.8741 3.4509 38 1 3.7863 -2.3843 2.5201 39 1 6.0339 -1.6868 1.7400 40 1 5.8884 -0.1764 2.6706 41 1 5.4604 -2.3472 4.4257 42 1 7.3645 -3.6491 6.8353 43 1 2.2491 -1.6318 -1.1525 44 1 4.7250 -0.4562 -3.0761 45 1 4.0161 -1.9788 -2.4868 46 1 4.4163 -1.7926 -4.2110 47 1 2.6627 -2.3873 -5.2763 48 1 2.5098 -3.2669 -7.5953 49 1 2.3843 -1.6859 -9.4780 50 1 2.5396 1.5669 -6.9058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175189035.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:48 Heat of formation + Delta-G solvation = -44.122541 kcal Electronic energy + Delta-G solvation = -27959.649350 eV Core-core repulsion = 23987.115413 eV Total energy + Delta-G solvation = -3972.533936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.32613 -40.20607 -38.55839 -36.96420 -35.31638 -33.61633 -32.86884 -32.63138 -31.27618 -30.50249 -30.04524 -27.50519 -25.49912 -24.41109 -24.10499 -23.41942 -22.19481 -21.07999 -20.79130 -20.67618 -18.94561 -17.97439 -17.21976 -17.02926 -16.75035 -16.41427 -16.11284 -15.21302 -15.10921 -14.80624 -14.68240 -14.62201 -14.24665 -14.03910 -13.79220 -13.53488 -13.46318 -13.19921 -13.02218 -12.96158 -12.78244 -12.65459 -12.43344 -12.07380 -11.83132 -11.74853 -11.52013 -11.31707 -11.04851 -10.83597 -10.76000 -10.46283 -10.36040 -10.30890 -10.07186 -10.02337 -10.00402 -9.69508 -9.38661 -8.88611 -8.87824 -6.92480 -5.77465 -3.05981 0.67528 0.76738 2.08476 2.23230 3.10613 3.34744 3.42623 3.47606 3.49297 3.98230 4.10462 4.16557 4.26585 4.30669 4.36585 4.46829 4.61777 4.62506 4.75096 4.81566 4.89819 5.02099 5.08206 5.18375 5.27654 5.32174 5.37979 5.50042 5.52398 5.55710 5.57756 5.60732 5.62586 5.71983 5.81617 5.88843 5.92219 6.03339 6.12345 6.25377 6.28111 6.34699 6.42179 6.69453 6.85899 6.89870 7.11178 7.52119 7.69041 7.83245 8.41920 9.52691 10.11671 10.46105 11.45554 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013473 B = 0.001847 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.765634 B =15153.399442 C =16664.807195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.091 0.909 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.934 5.934 13 Si 0.908 3.092 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.716 5.716 18 C 0.520 3.480 19 O -0.515 6.515 20 C 0.065 3.935 21 H 0.098 0.902 22 C -0.179 4.179 23 O -0.277 6.277 24 C 0.084 3.916 25 C -0.170 4.170 26 C -0.130 4.130 27 C 0.055 3.945 28 N -0.447 5.447 29 C 0.077 3.923 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.015 0.985 40 H 0.016 0.984 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.401 0.599 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.142 0.858 48 H 0.139 0.861 49 H 0.159 0.841 50 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.663 1.107 -25.305 29.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.109 0.891 4 C -0.165 4.165 5 C -0.153 4.153 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.371 4.371 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.370 5.370 18 C 0.304 3.696 19 O -0.389 6.389 20 C 0.005 3.995 21 H 0.116 0.884 22 C -0.237 4.237 23 O -0.188 6.188 24 C 0.035 3.965 25 C -0.197 4.197 26 C -0.150 4.150 27 C -0.101 4.101 28 N -0.156 5.156 29 C -0.082 4.082 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.216 0.784 42 H 0.065 0.935 43 H 0.236 0.764 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.094 0.906 47 H 0.159 0.841 48 H 0.157 0.843 49 H 0.176 0.824 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -15.717 2.774 -25.992 30.501 hybrid contribution 1.008 -1.629 1.305 2.318 sum -14.709 1.145 -24.687 28.760 Atomic orbital electron populations 1.22186 0.95202 1.02171 1.02676 1.21106 0.93836 0.97826 0.83394 0.89096 1.21952 0.96948 1.00956 0.96630 1.21528 0.93870 1.01215 0.98640 1.21728 0.97287 1.00241 0.97104 1.20648 0.90967 0.95358 0.90552 1.42387 1.05331 1.65044 1.25118 1.19252 0.83919 1.28432 1.05456 0.91233 1.24751 0.97748 1.00951 0.97702 1.69662 1.32779 1.40792 1.15096 0.86179 0.85051 0.77042 0.77866 1.21700 1.21750 1.20778 1.45989 1.67558 1.14172 1.09288 1.19945 0.78205 0.87446 0.84027 1.90758 1.48357 1.15393 1.84440 1.22285 0.99442 0.92010 0.85797 0.88402 1.22377 0.94767 1.02741 1.03767 1.86252 1.87256 1.34394 1.10886 1.20254 0.97178 0.92873 0.86148 1.21802 1.04502 0.94242 0.99110 1.22027 0.98814 1.01660 0.92458 1.22711 0.99168 0.88480 0.99773 1.67761 1.10021 1.15376 1.22413 1.22290 1.00066 1.00637 0.85160 0.92264 0.92405 0.91272 0.89985 0.91256 0.92182 0.91898 0.92003 0.92133 0.96679 0.96572 0.78354 0.93540 0.76398 0.90116 0.89743 0.90643 0.84059 0.84330 0.82420 0.81733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.48 37.16 0.35 -0.95 16 2 C 0.14 1.24 2.57 -67.92 -0.17 1.06 16 3 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 4 C -0.13 -1.10 4.75 -26.73 -0.13 -1.23 16 5 C -0.11 -1.29 5.10 -26.73 -0.14 -1.42 16 6 C -0.13 -1.89 5.33 -26.73 -0.14 -2.03 16 7 C 0.15 3.04 6.26 -4.04 -0.03 3.02 16 8 N -0.73 -18.85 5.60 -59.91 -0.34 -19.18 16 9 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 10 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 11 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 12 N -0.93 -28.39 13.06 55.49 0.72 -27.66 16 13 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 N -0.72 -5.58 4.42 -53.80 -0.24 -5.82 16 18 C 0.52 5.25 7.20 -10.99 -0.08 5.18 16 19 O -0.52 -7.51 16.16 -14.35 -0.23 -7.74 16 20 C 0.06 0.50 2.65 -27.89 -0.07 0.43 16 21 H 0.10 0.50 6.36 -51.93 -0.33 0.17 16 22 C -0.18 -1.12 9.08 37.15 0.34 -0.78 16 23 O -0.28 -2.85 9.34 -39.38 -0.37 -3.22 16 24 C 0.08 0.75 6.62 -39.07 -0.26 0.49 16 25 C -0.17 -1.14 8.34 -39.14 -0.33 -1.46 16 26 C -0.13 -0.76 10.11 -39.46 -0.40 -1.16 16 27 C 0.06 0.39 11.18 -17.54 -0.20 0.20 16 28 N -0.45 -4.27 10.35 -13.13 -0.14 -4.41 16 29 C 0.08 0.73 11.14 -17.37 -0.19 0.54 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.50 8.14 -51.94 -0.42 0.08 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.63 7.75 -51.93 -0.40 0.23 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.38 10.25 7.67 -40.82 -0.31 9.94 16 42 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.40 2.12 8.02 -40.82 -0.33 1.79 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.38 7.56 -51.93 -0.39 -0.01 16 46 H 0.07 0.41 6.92 -51.93 -0.36 0.05 16 47 H 0.14 0.62 5.59 -52.48 -0.29 0.33 16 48 H 0.14 0.42 8.06 -52.48 -0.42 0.00 16 49 H 0.16 0.70 8.06 -52.49 -0.42 0.27 16 50 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 412.44 15.07 6.22 6.22 Total: -1.00 -35.69 412.44 -9.36 -45.05 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -8.28 Total: 4.92 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -1.69 Total: -5.64 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.02 Total: -57.07 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -0.60 Total: -10.95 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.69 -9.36 -45.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175189035.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.925 kcal (2) G-P(sol) polarization free energy of solvation -35.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds