Wall clock time and date at job start Tue Mar 31 2020 18:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.53009 * 109.46982 * 120.00047 * 2 1 3 5 5 C 1.52999 * 109.46875 * 185.00153 * 4 2 1 6 6 C 1.53005 * 109.46539 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46539 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.47044 * 179.97438 * 7 6 5 9 9 C 1.36941 * 120.00413 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99727 * 0.02562 * 9 8 7 11 11 C 1.38806 * 120.00200 * 180.02562 * 9 8 7 12 12 N 1.31624 * 120.00237 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99960 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47191 * 90.00419 * 13 11 9 15 15 H 1.48498 * 109.47023 * 210.00233 * 13 11 9 16 16 H 1.48502 * 109.47260 * 330.00232 * 13 11 9 17 17 N 1.46502 * 109.47227 * 239.99817 * 2 1 3 18 18 C 1.34774 * 119.99686 * 85.00307 * 17 2 1 19 19 O 1.21277 * 119.99994 * 359.97438 * 18 17 2 20 20 C 1.50699 * 119.99677 * 179.97438 * 18 17 2 21 21 H 1.08996 * 109.47418 * 60.00415 * 20 18 17 22 22 C 1.52994 * 109.47427 * 299.99604 * 20 18 17 23 23 O 1.42908 * 109.47023 * 180.02562 * 20 18 17 24 24 C 1.35913 * 116.99847 * 204.90104 * 23 20 18 25 25 C 1.39137 * 120.47559 * 354.50397 * 24 23 20 26 26 C 1.38535 * 118.37558 * 180.02562 * 25 24 23 27 27 C 1.38258 * 119.21963 * 359.97438 * 26 25 24 28 28 N 1.31842 * 120.88590 * 0.02562 * 27 26 25 29 29 C 1.31842 * 121.78307 * 359.70517 * 28 27 26 30 30 H 1.09002 * 109.46998 * 60.00586 * 1 2 3 31 31 H 1.09007 * 109.46567 * 179.97438 * 1 2 3 32 32 H 1.08989 * 109.47332 * 299.99947 * 1 2 3 33 33 H 1.09005 * 109.46724 * 305.00055 * 4 2 1 34 34 H 1.08995 * 109.47031 * 65.00313 * 4 2 1 35 35 H 1.08996 * 109.47131 * 300.00079 * 5 4 2 36 36 H 1.08995 * 109.47160 * 60.00240 * 5 4 2 37 37 H 1.09000 * 109.47275 * 299.99499 * 6 5 4 38 38 H 1.08995 * 109.47109 * 60.00318 * 6 5 4 39 39 H 1.09002 * 109.47568 * 300.00098 * 7 6 5 40 40 H 1.09006 * 109.47636 * 60.00265 * 7 6 5 41 41 H 0.97006 * 119.99969 * 0.02562 * 8 7 6 42 42 H 0.96996 * 120.00037 * 179.97438 * 12 11 9 43 43 H 0.97000 * 119.99842 * 264.99624 * 17 2 1 44 44 H 1.09001 * 109.47930 * 300.00616 * 22 20 18 45 45 H 1.09002 * 109.46844 * 60.00153 * 22 20 18 46 46 H 1.09005 * 109.47393 * 179.97438 * 22 20 18 47 47 H 1.08004 * 120.81105 * 359.97438 * 25 24 23 48 48 H 1.08004 * 120.38918 * 180.02562 * 26 25 24 49 49 H 1.08001 * 119.55386 * 179.97438 * 27 26 25 50 50 H 1.08002 * 119.65843 * 180.29216 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0747 -1.3341 2.5634 7 6 5.5995 -1.2266 2.6275 8 7 6.0878 -1.9162 3.8243 9 6 7.4299 -1.9533 4.0937 10 1 8.1285 -1.4738 3.4240 11 6 7.8925 -2.6071 5.2274 12 7 7.0412 -3.1919 6.0433 13 14 9.7233 -2.6570 5.5951 14 1 10.0938 -1.4823 6.4245 15 1 10.0462 -3.9050 6.3322 16 1 10.4852 -2.6234 4.3209 17 7 2.0184 -0.6906 -1.1962 18 6 2.1471 -0.0183 -2.3571 19 8 1.8583 1.1583 -2.4116 20 6 2.6501 -0.7286 -3.5874 21 1 1.9779 -1.5508 -3.8325 22 6 4.0527 -1.2785 -3.3213 23 8 2.6986 0.1898 -4.6812 24 6 2.6164 -0.3355 -5.9320 25 6 2.6056 -1.7142 -6.1190 26 6 2.5210 -2.2025 -7.4127 27 6 2.4500 -1.3111 -8.4672 28 7 2.4625 -0.0099 -8.2555 29 6 2.5366 0.4952 -7.0399 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6053 -0.2617 2.1370 34 1 1.7517 -1.7715 1.2056 35 1 3.9994 -1.0728 0.4260 36 1 3.8531 0.4369 1.3575 37 1 3.6400 -0.8741 3.4509 38 1 3.7863 -2.3843 2.5201 39 1 6.0339 -1.6868 1.7400 40 1 5.8884 -0.1764 2.6706 41 1 5.4604 -2.3472 4.4257 42 1 7.3645 -3.6491 6.8353 43 1 2.2491 -1.6318 -1.1525 44 1 4.7250 -0.4562 -3.0761 45 1 4.0161 -1.9788 -2.4868 46 1 4.4163 -1.7926 -4.2110 47 1 2.6627 -2.3873 -5.2763 48 1 2.5098 -3.2669 -7.5953 49 1 2.3843 -1.6859 -9.4780 50 1 2.5396 1.5669 -6.9058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175189035.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:47 Heat of formation + Delta-G solvation = -67.520080 kcal Electronic energy + Delta-G solvation = -27960.663943 eV Core-core repulsion = 23987.115413 eV Total energy + Delta-G solvation = -3973.548530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.94548 -40.91117 -39.20760 -37.95847 -36.81531 -34.86414 -33.85363 -33.19726 -32.59551 -31.46502 -30.78456 -28.81506 -26.18119 -25.81694 -24.81601 -24.14387 -23.51420 -22.06604 -21.84990 -21.46048 -19.51760 -19.12982 -18.62364 -17.79549 -17.46550 -17.07937 -16.75891 -16.67997 -16.25475 -15.78984 -15.50066 -15.36248 -15.30340 -15.20301 -14.79931 -14.58672 -14.43040 -14.15360 -14.02450 -13.97750 -13.35976 -13.26258 -13.12831 -13.02880 -12.89547 -12.84463 -12.64538 -12.45417 -12.34967 -12.23253 -12.15386 -11.88326 -11.80988 -11.47866 -11.39747 -10.94986 -10.93872 -10.72367 -10.58735 -10.15470 -9.48256 -9.01060 -7.96812 -5.25788 0.13484 0.22564 1.41683 1.46570 1.48445 1.52492 1.56907 2.47794 2.55048 2.78847 3.36599 3.42561 3.55697 3.60271 3.65541 3.75314 3.79766 3.90073 4.03467 4.06660 4.13746 4.14860 4.31060 4.35471 4.41638 4.58089 4.60149 4.61895 4.65754 4.76464 4.77747 4.88432 4.92986 4.99406 5.00952 5.03159 5.07185 5.11285 5.12953 5.27741 5.32006 5.41362 5.44977 5.46378 5.54324 5.56291 6.12680 6.26304 6.47595 6.95935 7.14171 7.32082 8.09222 8.32188 9.26650 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013473 B = 0.001847 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.765634 B =15153.399442 C =16664.807195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.145 3.855 3 H 0.066 0.934 4 C -0.116 4.116 5 C -0.106 4.106 6 C -0.112 4.112 7 C 0.147 3.853 8 N -0.749 5.749 9 C -0.250 4.250 10 H 0.073 0.927 11 C -0.076 4.076 12 N -0.968 5.968 13 Si 0.974 3.026 14 H -0.288 1.288 15 H -0.292 1.292 16 H -0.269 1.269 17 N -0.702 5.702 18 C 0.516 3.484 19 O -0.569 6.569 20 C 0.066 3.934 21 H 0.130 0.870 22 C -0.175 4.175 23 O -0.306 6.306 24 C 0.069 3.931 25 C -0.167 4.167 26 C -0.121 4.121 27 C 0.046 3.954 28 N -0.475 5.475 29 C 0.051 3.949 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.020 0.980 40 H 0.010 0.990 41 H 0.374 0.626 42 H 0.252 0.748 43 H 0.417 0.583 44 H 0.058 0.942 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.169 0.831 48 H 0.175 0.825 49 H 0.183 0.817 50 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.769 -1.238 -26.202 30.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.041 3.959 3 H 0.084 0.916 4 C -0.153 4.153 5 C -0.144 4.144 6 C -0.150 4.150 7 C 0.021 3.979 8 N -0.391 5.391 9 C -0.382 4.382 10 H 0.091 0.909 11 C -0.268 4.268 12 N -0.619 5.619 13 Si 0.803 3.197 14 H -0.215 1.215 15 H -0.219 1.219 16 H -0.194 1.194 17 N -0.356 5.356 18 C 0.302 3.698 19 O -0.448 6.448 20 C 0.007 3.993 21 H 0.147 0.853 22 C -0.232 4.232 23 O -0.218 6.218 24 C 0.021 3.979 25 C -0.193 4.193 26 C -0.140 4.140 27 C -0.111 4.111 28 N -0.184 5.184 29 C -0.107 4.107 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.038 0.962 40 H 0.028 0.972 41 H 0.206 0.794 42 H 0.061 0.939 43 H 0.255 0.745 44 H 0.077 0.923 45 H 0.125 0.875 46 H 0.107 0.893 47 H 0.186 0.814 48 H 0.193 0.807 49 H 0.200 0.800 50 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.820 0.422 -26.911 31.219 hybrid contribution 1.019 -0.905 1.521 2.042 sum -14.801 -0.483 -25.390 29.393 Atomic orbital electron populations 1.22127 0.94279 1.03093 1.02156 1.20998 0.94487 0.96733 0.83731 0.91590 1.21847 0.94711 1.02189 0.96592 1.21441 0.95796 1.00096 0.97084 1.21599 0.93623 1.01070 0.98715 1.20873 0.94356 0.94165 0.88510 1.42629 1.04464 1.65437 1.26611 1.19654 0.85392 1.27709 1.05413 0.90897 1.25592 1.02172 1.01238 0.97837 1.69811 1.34641 1.41921 1.15532 0.85128 0.79961 0.76691 0.77911 1.21466 1.21887 1.19431 1.45887 1.66481 1.14793 1.08420 1.20468 0.77316 0.86917 0.85135 1.90735 1.50885 1.17809 1.85347 1.22432 1.00846 0.91937 0.84129 0.85287 1.22389 0.93242 1.02352 1.05238 1.86214 1.87699 1.36056 1.11818 1.20321 0.98168 0.93995 0.85421 1.22145 1.03247 0.93369 1.00538 1.22428 0.96813 1.03242 0.91548 1.23264 0.98313 0.87912 1.01587 1.67737 1.11135 1.17042 1.22513 1.22283 1.01722 1.00806 0.85892 0.94096 0.90677 0.90548 0.89603 0.89248 0.91089 0.92919 0.92631 0.91575 0.96178 0.97183 0.79405 0.93921 0.74499 0.92327 0.87503 0.89343 0.81382 0.80749 0.80016 0.82559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.48 71.98 0.68 -1.60 16 2 C 0.14 2.34 2.57 44.99 0.12 2.45 16 3 H 0.07 1.44 7.58 -2.39 -0.02 1.42 16 4 C -0.12 -1.72 4.75 30.60 0.15 -1.58 16 5 C -0.11 -2.19 5.10 30.60 0.16 -2.03 16 6 C -0.11 -3.21 5.33 30.60 0.16 -3.04 16 7 C 0.15 5.77 6.26 86.38 0.54 6.31 16 8 N -0.75 -38.31 5.60 -343.44 -1.92 -40.23 16 9 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16 10 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 11 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 12 N -0.97 -59.12 13.06 21.65 0.28 -58.84 16 13 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 14 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 15 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 17 N -0.70 -9.68 4.42 -442.52 -1.96 -11.63 16 18 C 0.52 10.18 7.20 87.66 0.63 10.81 16 19 O -0.57 -17.29 16.16 16.02 0.26 -17.03 16 20 C 0.07 0.92 2.65 29.85 0.08 1.00 16 21 H 0.13 0.94 6.36 -2.39 -0.02 0.92 16 22 C -0.17 -1.82 9.08 71.98 0.65 -1.17 16 23 O -0.31 -6.38 9.34 -73.54 -0.69 -7.07 16 24 C 0.07 1.21 6.62 22.60 0.15 1.36 16 25 C -0.17 -1.82 8.34 22.56 0.19 -1.63 16 26 C -0.12 -1.05 10.11 22.35 0.23 -0.82 16 27 C 0.05 0.58 11.18 84.70 0.95 1.53 16 28 N -0.47 -9.17 10.35 -195.44 -2.02 -11.20 16 29 C 0.05 1.01 11.14 84.80 0.94 1.96 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.32 7.75 -2.39 -0.02 1.30 16 36 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 41 H 0.37 20.13 7.67 -92.70 -0.71 19.42 16 42 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 43 H 0.42 3.04 8.02 -92.71 -0.74 2.30 16 44 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.11 0.60 7.56 -2.39 -0.02 0.58 16 46 H 0.09 0.71 6.92 -2.38 -0.02 0.69 16 47 H 0.17 0.80 5.59 -2.91 -0.02 0.78 16 48 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 49 H 0.18 1.20 8.06 -2.91 -0.02 1.17 16 50 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -79.76 412.44 2.39 -77.36 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: -0.51 Total: 24.23 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 6.93 Total: -3.67 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -5.62 Total: -121.90 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.43 Total: -24.10 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -79.76 2.39 -77.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175189035.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.845 kcal (2) G-P(sol) polarization free energy of solvation -79.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds