Wall clock time and date at job start Tue Mar 31 2020 18:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47679 * 2 1 4 4 C 1.52999 * 109.47107 * 239.99731 * 2 1 3 5 5 C 1.53005 * 109.47320 * 174.99898 * 4 2 1 6 6 C 1.52999 * 109.47005 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47005 * 180.02562 * 6 5 4 8 8 N 1.46502 * 109.47108 * 179.97438 * 7 6 5 9 9 C 1.36939 * 119.99670 * 179.97438 * 8 7 6 10 10 H 1.07991 * 120.00251 * 0.02562 * 9 8 7 11 11 C 1.38814 * 119.99730 * 179.97438 * 9 8 7 12 12 N 1.31627 * 119.99999 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00194 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46914 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47124 * 119.99880 * 13 11 9 16 16 H 1.48502 * 109.47213 * 240.00283 * 13 11 9 17 17 N 1.46499 * 109.47082 * 120.00164 * 2 1 3 18 18 C 1.34774 * 119.99972 * 274.99279 * 17 2 1 19 19 O 1.21281 * 119.99826 * 0.02562 * 18 17 2 20 20 C 1.50700 * 120.00076 * 179.97438 * 18 17 2 21 21 H 1.09005 * 109.46873 * 60.00908 * 20 18 17 22 22 C 1.52996 * 109.47649 * 300.00836 * 20 18 17 23 23 O 1.42899 * 109.47447 * 180.02562 * 20 18 17 24 24 C 1.35906 * 117.00472 * 204.90138 * 23 20 18 25 25 C 1.39142 * 120.47266 * 354.50697 * 24 23 20 26 26 C 1.38533 * 118.37246 * 179.97438 * 25 24 23 27 27 C 1.38252 * 119.22702 * 0.02562 * 26 25 24 28 28 N 1.31850 * 120.88261 * 359.97438 * 27 26 25 29 29 C 1.31840 * 121.78187 * 359.70798 * 28 27 26 30 30 H 1.08998 * 109.46738 * 300.00210 * 1 2 3 31 31 H 1.09000 * 109.46678 * 59.99581 * 1 2 3 32 32 H 1.08999 * 109.47213 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46804 * 55.00239 * 4 2 1 34 34 H 1.08994 * 109.47540 * 295.00668 * 4 2 1 35 35 H 1.08996 * 109.46610 * 60.00372 * 5 4 2 36 36 H 1.08995 * 109.46985 * 300.00557 * 5 4 2 37 37 H 1.09004 * 109.47264 * 300.00032 * 6 5 4 38 38 H 1.09004 * 109.47137 * 60.00329 * 6 5 4 39 39 H 1.09004 * 109.46867 * 299.99946 * 7 6 5 40 40 H 1.09004 * 109.47173 * 60.00022 * 7 6 5 41 41 H 0.96997 * 120.00479 * 0.02562 * 8 7 6 42 42 H 0.96993 * 119.99761 * 180.02562 * 12 11 9 43 43 H 0.97001 * 120.00412 * 95.00261 * 17 2 1 44 44 H 1.09005 * 109.47042 * 299.99968 * 22 20 18 45 45 H 1.09004 * 109.47312 * 59.99538 * 22 20 18 46 46 H 1.08994 * 109.47455 * 179.97438 * 22 20 18 47 47 H 1.08001 * 120.81125 * 359.97438 * 25 24 23 48 48 H 1.08004 * 120.38579 * 180.02562 * 26 25 24 49 49 H 1.07999 * 119.55881 * 179.97438 * 27 26 25 50 50 H 1.08002 * 119.66152 * 180.28778 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0747 -1.3341 -2.5633 7 6 5.5996 -1.2267 -2.6274 8 7 6.0879 -1.9174 -3.8236 9 6 7.4299 -1.9537 -4.0933 10 1 8.1284 -1.4737 -3.4240 11 6 7.8927 -2.6086 -5.2264 12 7 7.0414 -3.1942 -6.0418 13 14 9.7234 -2.6589 -5.5940 14 1 10.4619 -1.9318 -4.5305 15 1 10.1811 -4.0709 -5.6369 16 1 9.9827 -2.0144 -6.9065 17 7 2.0183 -0.6906 1.1961 18 6 2.1471 -0.0183 2.3571 19 8 1.8584 1.1584 2.4116 20 6 2.6489 -0.7288 3.5877 21 1 3.6481 -1.1214 3.3985 22 6 1.7045 -1.8824 3.9314 23 8 2.6967 0.1892 4.6817 24 6 3.5712 -0.0900 5.6839 25 6 4.2905 -1.2811 5.6812 26 6 5.1704 -1.5210 6.7240 27 6 5.3038 -0.5773 7.7254 28 7 4.6069 0.5417 7.6980 29 6 3.7639 0.8109 6.7208 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6053 -0.2617 -2.1369 34 1 1.7515 -1.7715 -1.2056 35 1 3.9994 -1.0729 -0.4260 36 1 3.8532 0.4369 -1.3573 37 1 3.7863 -2.3844 -2.5200 38 1 3.6400 -0.8742 -3.4508 39 1 5.8883 -0.1765 -2.6705 40 1 6.0339 -1.6869 -1.7399 41 1 5.4605 -2.3483 -4.4250 42 1 7.3647 -3.6521 -6.8334 43 1 2.2490 -1.6318 1.1526 44 1 0.7053 -1.4899 4.1205 45 1 1.6676 -2.5828 3.0970 46 1 2.0676 -2.3966 4.8212 47 1 4.1659 -2.0009 4.8857 48 1 5.7455 -2.4347 6.7542 49 1 5.9879 -0.7590 8.5411 50 1 3.2139 1.7404 6.7303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175189037.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:51 Heat of formation + Delta-G solvation = -44.254476 kcal Electronic energy + Delta-G solvation = -27984.481126 eV Core-core repulsion = 24011.941468 eV Total energy + Delta-G solvation = -3972.539658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.30918 -40.19416 -38.54538 -36.96404 -35.32195 -33.63515 -32.85669 -32.60072 -31.27709 -30.48118 -30.07885 -27.50582 -25.50938 -24.40897 -24.08710 -23.39776 -22.20383 -21.10463 -20.77384 -20.67325 -18.94199 -17.96079 -17.20460 -17.03151 -16.72538 -16.30437 -16.20419 -15.20857 -15.17639 -14.84540 -14.76952 -14.41124 -14.20732 -13.98367 -13.89484 -13.52002 -13.47598 -13.21065 -13.02512 -12.99232 -12.81905 -12.66772 -12.44179 -12.06433 -11.83692 -11.74638 -11.52365 -11.32392 -11.05394 -10.85066 -10.76713 -10.45196 -10.36667 -10.28008 -10.05990 -10.00187 -9.98060 -9.70364 -9.38521 -8.88829 -8.86236 -6.92971 -5.78060 -3.06555 0.71154 0.79772 2.10019 2.22471 3.10804 3.38100 3.41845 3.47467 3.49808 3.99411 4.12957 4.17170 4.27292 4.31193 4.38441 4.47291 4.61464 4.65500 4.76540 4.80993 4.89607 4.96247 5.01110 5.18433 5.30492 5.32288 5.38002 5.44407 5.50259 5.55509 5.58339 5.61654 5.62665 5.71767 5.81611 5.89026 5.94833 6.03255 6.12251 6.24856 6.27870 6.34184 6.41589 6.70972 6.85333 6.89304 7.11297 7.55238 7.69096 7.83372 8.41368 9.52189 10.11104 10.45573 11.45063 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009879 B = 0.002066 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.607761 B =13549.618800 C =15811.774433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.091 0.909 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.716 5.716 18 C 0.520 3.480 19 O -0.515 6.515 20 C 0.063 3.937 21 H 0.101 0.899 22 C -0.176 4.176 23 O -0.277 6.277 24 C 0.082 3.918 25 C -0.169 4.169 26 C -0.129 4.129 27 C 0.056 3.944 28 N -0.447 5.447 29 C 0.077 3.923 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.017 0.983 40 H 0.015 0.985 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.401 0.599 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.142 0.858 48 H 0.140 0.860 49 H 0.159 0.841 50 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.030 1.542 24.933 28.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.109 0.891 4 C -0.165 4.165 5 C -0.153 4.153 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.218 1.218 17 N -0.370 5.370 18 C 0.304 3.696 19 O -0.389 6.389 20 C 0.003 3.997 21 H 0.119 0.881 22 C -0.234 4.234 23 O -0.188 6.188 24 C 0.034 3.966 25 C -0.196 4.196 26 C -0.149 4.149 27 C -0.100 4.100 28 N -0.156 5.156 29 C -0.081 4.081 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.034 0.966 40 H 0.033 0.967 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.236 0.764 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.094 0.906 47 H 0.160 0.840 48 H 0.157 0.843 49 H 0.176 0.824 50 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.098 3.216 25.628 29.426 hybrid contribution 0.990 -1.642 -1.314 2.325 sum -13.108 1.575 24.314 27.667 Atomic orbital electron populations 1.22180 0.95142 1.02186 1.02677 1.21103 0.93892 0.97792 0.83377 0.89134 1.21951 0.96902 1.00978 0.96656 1.21529 0.93916 1.01202 0.98629 1.21729 0.97277 1.00253 0.97098 1.20649 0.90981 0.95349 0.90558 1.42397 1.05358 1.64975 1.25178 1.19294 0.83907 1.28299 1.05448 0.91187 1.24761 0.97779 1.00977 0.97715 1.69673 1.32691 1.40804 1.15162 0.86106 0.85023 0.77222 0.77803 1.20557 1.21852 1.21822 1.45988 1.67584 1.14153 1.09281 1.19939 0.78448 0.87332 0.83882 1.90759 1.48274 1.15434 1.84482 1.22280 1.01622 0.90020 0.85791 0.88126 1.22351 1.00683 0.96761 1.03603 1.86234 1.55937 1.48650 1.28019 1.20247 0.91115 0.94739 0.90467 1.21807 0.99234 0.97388 1.01138 1.22037 0.97865 1.00844 0.94140 1.22718 0.98623 0.89905 0.98803 1.67762 1.04842 1.19855 1.23127 1.22278 0.97586 0.99190 0.89096 0.92214 0.91309 0.92382 0.89972 0.91235 0.92251 0.91906 0.92114 0.91981 0.96563 0.96696 0.78343 0.93578 0.76400 0.90439 0.89939 0.90633 0.84044 0.84264 0.82391 0.81776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.48 37.16 0.35 -0.94 16 2 C 0.14 1.24 2.57 -67.93 -0.17 1.07 16 3 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 4 C -0.13 -1.11 4.75 -26.73 -0.13 -1.23 16 5 C -0.11 -1.31 5.10 -26.73 -0.14 -1.44 16 6 C -0.13 -1.90 5.33 -26.73 -0.14 -2.04 16 7 C 0.15 3.06 6.26 -4.04 -0.03 3.03 16 8 N -0.74 -18.91 5.60 -59.91 -0.34 -19.25 16 9 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 10 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 11 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 12 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 13 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 17 N -0.72 -5.59 4.42 -53.81 -0.24 -5.83 16 18 C 0.52 5.27 7.20 -10.99 -0.08 5.19 16 19 O -0.52 -7.52 16.16 -14.35 -0.23 -7.75 16 20 C 0.06 0.49 2.65 -27.89 -0.07 0.41 16 21 H 0.10 0.60 6.36 -51.93 -0.33 0.27 16 22 C -0.18 -0.89 9.08 37.16 0.34 -0.56 16 23 O -0.28 -2.86 9.34 -39.35 -0.37 -3.23 16 24 C 0.08 0.76 6.62 -39.07 -0.26 0.50 16 25 C -0.17 -1.22 8.34 -39.14 -0.33 -1.54 16 26 C -0.13 -0.83 10.11 -39.47 -0.40 -1.23 16 27 C 0.06 0.43 11.18 -17.54 -0.20 0.23 16 28 N -0.45 -4.45 10.36 -13.12 -0.14 -4.58 16 29 C 0.08 0.75 11.14 -17.37 -0.19 0.56 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.64 7.75 -51.93 -0.40 0.24 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.38 10.27 7.67 -40.82 -0.31 9.96 16 42 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.40 2.13 8.02 -40.82 -0.33 1.80 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.25 7.57 -51.93 -0.39 -0.14 16 46 H 0.07 0.33 6.92 -51.93 -0.36 -0.03 16 47 H 0.14 0.70 5.59 -52.49 -0.29 0.41 16 48 H 0.14 0.53 8.06 -52.48 -0.42 0.10 16 49 H 0.16 0.79 8.06 -52.49 -0.42 0.36 16 50 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 412.44 15.07 6.22 6.22 Total: -1.00 -35.81 412.44 -9.36 -45.17 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -8.28 Total: 4.97 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -1.69 Total: -5.50 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.02 Total: -57.37 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.60 Total: -10.98 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.81 -9.36 -45.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175189037.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.919 kcal (2) G-P(sol) polarization free energy of solvation -35.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds