Wall clock time and date at job start Tue Mar 31 2020 18:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47679 * 2 1 4 4 C 1.52999 * 109.47107 * 239.99731 * 2 1 3 5 5 C 1.53005 * 109.47320 * 174.99898 * 4 2 1 6 6 C 1.52999 * 109.47005 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47005 * 180.02562 * 6 5 4 8 8 N 1.46502 * 109.47108 * 179.97438 * 7 6 5 9 9 C 1.36939 * 119.99670 * 179.97438 * 8 7 6 10 10 H 1.07991 * 120.00251 * 0.02562 * 9 8 7 11 11 C 1.38814 * 119.99730 * 179.97438 * 9 8 7 12 12 N 1.31627 * 119.99999 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00194 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46914 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47124 * 119.99880 * 13 11 9 16 16 H 1.48502 * 109.47213 * 240.00283 * 13 11 9 17 17 N 1.46499 * 109.47082 * 120.00164 * 2 1 3 18 18 C 1.34774 * 119.99972 * 274.99279 * 17 2 1 19 19 O 1.21281 * 119.99826 * 0.02562 * 18 17 2 20 20 C 1.50700 * 120.00076 * 179.97438 * 18 17 2 21 21 H 1.09005 * 109.46873 * 60.00908 * 20 18 17 22 22 C 1.52996 * 109.47649 * 300.00836 * 20 18 17 23 23 O 1.42899 * 109.47447 * 180.02562 * 20 18 17 24 24 C 1.35906 * 117.00472 * 204.90138 * 23 20 18 25 25 C 1.39142 * 120.47266 * 354.50697 * 24 23 20 26 26 C 1.38533 * 118.37246 * 179.97438 * 25 24 23 27 27 C 1.38252 * 119.22702 * 0.02562 * 26 25 24 28 28 N 1.31850 * 120.88261 * 359.97438 * 27 26 25 29 29 C 1.31840 * 121.78187 * 359.70798 * 28 27 26 30 30 H 1.08998 * 109.46738 * 300.00210 * 1 2 3 31 31 H 1.09000 * 109.46678 * 59.99581 * 1 2 3 32 32 H 1.08999 * 109.47213 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46804 * 55.00239 * 4 2 1 34 34 H 1.08994 * 109.47540 * 295.00668 * 4 2 1 35 35 H 1.08996 * 109.46610 * 60.00372 * 5 4 2 36 36 H 1.08995 * 109.46985 * 300.00557 * 5 4 2 37 37 H 1.09004 * 109.47264 * 300.00032 * 6 5 4 38 38 H 1.09004 * 109.47137 * 60.00329 * 6 5 4 39 39 H 1.09004 * 109.46867 * 299.99946 * 7 6 5 40 40 H 1.09004 * 109.47173 * 60.00022 * 7 6 5 41 41 H 0.96997 * 120.00479 * 0.02562 * 8 7 6 42 42 H 0.96993 * 119.99761 * 180.02562 * 12 11 9 43 43 H 0.97001 * 120.00412 * 95.00261 * 17 2 1 44 44 H 1.09005 * 109.47042 * 299.99968 * 22 20 18 45 45 H 1.09004 * 109.47312 * 59.99538 * 22 20 18 46 46 H 1.08994 * 109.47455 * 179.97438 * 22 20 18 47 47 H 1.08001 * 120.81125 * 359.97438 * 25 24 23 48 48 H 1.08004 * 120.38579 * 180.02562 * 26 25 24 49 49 H 1.07999 * 119.55881 * 179.97438 * 27 26 25 50 50 H 1.08002 * 119.66152 * 180.28778 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0747 -1.3341 -2.5633 7 6 5.5996 -1.2267 -2.6274 8 7 6.0879 -1.9174 -3.8236 9 6 7.4299 -1.9537 -4.0933 10 1 8.1284 -1.4737 -3.4240 11 6 7.8927 -2.6086 -5.2264 12 7 7.0414 -3.1942 -6.0418 13 14 9.7234 -2.6589 -5.5940 14 1 10.4619 -1.9318 -4.5305 15 1 10.1811 -4.0709 -5.6369 16 1 9.9827 -2.0144 -6.9065 17 7 2.0183 -0.6906 1.1961 18 6 2.1471 -0.0183 2.3571 19 8 1.8584 1.1584 2.4116 20 6 2.6489 -0.7288 3.5877 21 1 3.6481 -1.1214 3.3985 22 6 1.7045 -1.8824 3.9314 23 8 2.6967 0.1892 4.6817 24 6 3.5712 -0.0900 5.6839 25 6 4.2905 -1.2811 5.6812 26 6 5.1704 -1.5210 6.7240 27 6 5.3038 -0.5773 7.7254 28 7 4.6069 0.5417 7.6980 29 6 3.7639 0.8109 6.7208 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6053 -0.2617 -2.1369 34 1 1.7515 -1.7715 -1.2056 35 1 3.9994 -1.0729 -0.4260 36 1 3.8532 0.4369 -1.3573 37 1 3.7863 -2.3844 -2.5200 38 1 3.6400 -0.8742 -3.4508 39 1 5.8883 -0.1765 -2.6705 40 1 6.0339 -1.6869 -1.7399 41 1 5.4605 -2.3483 -4.4250 42 1 7.3647 -3.6521 -6.8334 43 1 2.2490 -1.6318 1.1526 44 1 0.7053 -1.4899 4.1205 45 1 1.6676 -2.5828 3.0970 46 1 2.0676 -2.3966 4.8212 47 1 4.1659 -2.0009 4.8857 48 1 5.7455 -2.4347 6.7542 49 1 5.9879 -0.7590 8.5411 50 1 3.2139 1.7404 6.7303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175189037.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:51 Heat of formation + Delta-G solvation = -67.713615 kcal Electronic energy + Delta-G solvation = -27985.498390 eV Core-core repulsion = 24011.941468 eV Total energy + Delta-G solvation = -3973.556922 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.94537 -40.91154 -39.20863 -37.96339 -36.82216 -34.87663 -33.84291 -33.20104 -32.58841 -31.47309 -30.79854 -28.82186 -26.14560 -25.83907 -24.82242 -24.14300 -23.52870 -22.06933 -21.88072 -21.44086 -19.53509 -19.13780 -18.61910 -17.80734 -17.44526 -16.99309 -16.83881 -16.68153 -16.25239 -15.93107 -15.45987 -15.42666 -15.29006 -15.07734 -14.77739 -14.57481 -14.50713 -14.15795 -14.01683 -13.97723 -13.35115 -13.27203 -13.13599 -13.03103 -12.90309 -12.86292 -12.63740 -12.47090 -12.29706 -12.26789 -12.11729 -11.89323 -11.81893 -11.48767 -11.40117 -10.95545 -10.95382 -10.72591 -10.59307 -10.15438 -9.48469 -9.01955 -7.97587 -5.26637 0.13139 0.21902 1.43742 1.46417 1.47315 1.50450 1.57540 2.47734 2.54503 2.78526 3.35926 3.42454 3.55379 3.60056 3.65351 3.75230 3.81043 3.90460 4.02919 4.05959 4.13375 4.14143 4.30812 4.35073 4.41445 4.59069 4.60251 4.62361 4.65280 4.76344 4.77604 4.87981 4.92751 4.98964 5.00210 5.02520 5.06477 5.10197 5.12578 5.27554 5.32406 5.40881 5.44196 5.45852 5.53354 5.55823 6.11996 6.25783 6.47485 6.95331 7.14140 7.31426 8.08310 8.31353 9.26154 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009879 B = 0.002066 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.607761 B =13549.618800 C =15811.774433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.145 3.855 3 H 0.065 0.935 4 C -0.116 4.116 5 C -0.106 4.106 6 C -0.112 4.112 7 C 0.147 3.853 8 N -0.749 5.749 9 C -0.248 4.248 10 H 0.073 0.927 11 C -0.077 4.077 12 N -0.969 5.969 13 Si 0.975 3.025 14 H -0.267 1.267 15 H -0.290 1.290 16 H -0.292 1.292 17 N -0.702 5.702 18 C 0.516 3.484 19 O -0.570 6.570 20 C 0.062 3.938 21 H 0.122 0.878 22 C -0.170 4.170 23 O -0.305 6.305 24 C 0.069 3.931 25 C -0.167 4.167 26 C -0.122 4.122 27 C 0.046 3.954 28 N -0.474 5.474 29 C 0.052 3.948 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.010 0.990 40 H 0.020 0.980 41 H 0.374 0.626 42 H 0.252 0.748 43 H 0.417 0.583 44 H 0.063 0.937 45 H 0.109 0.891 46 H 0.086 0.914 47 H 0.168 0.832 48 H 0.173 0.827 49 H 0.182 0.818 50 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.492 -0.526 25.571 28.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.041 3.959 3 H 0.084 0.916 4 C -0.153 4.153 5 C -0.144 4.144 6 C -0.150 4.150 7 C 0.021 3.979 8 N -0.392 5.392 9 C -0.380 4.380 10 H 0.091 0.909 11 C -0.270 4.270 12 N -0.620 5.620 13 Si 0.803 3.197 14 H -0.192 1.192 15 H -0.217 1.217 16 H -0.220 1.220 17 N -0.356 5.356 18 C 0.302 3.698 19 O -0.448 6.448 20 C 0.003 3.997 21 H 0.140 0.860 22 C -0.227 4.227 23 O -0.217 6.217 24 C 0.021 3.979 25 C -0.194 4.194 26 C -0.142 4.142 27 C -0.111 4.111 28 N -0.184 5.184 29 C -0.106 4.106 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.028 0.972 40 H 0.038 0.962 41 H 0.206 0.794 42 H 0.061 0.939 43 H 0.255 0.745 44 H 0.083 0.917 45 H 0.127 0.873 46 H 0.105 0.895 47 H 0.185 0.815 48 H 0.191 0.809 49 H 0.199 0.801 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.568 1.136 26.290 29.607 hybrid contribution 0.837 -0.989 -1.473 1.962 sum -12.730 0.147 24.818 27.893 Atomic orbital electron populations 1.22119 0.94196 1.03127 1.02148 1.20995 0.94562 0.96688 0.83703 0.91634 1.21847 0.94631 1.02227 0.96635 1.21442 0.95873 1.00079 0.97045 1.21601 0.93615 1.01086 0.98717 1.20873 0.94371 0.94160 0.88509 1.42642 1.04509 1.65374 1.26666 1.19677 0.85349 1.27563 1.05377 0.90906 1.25609 1.02224 1.01273 0.97858 1.69819 1.34586 1.41938 1.15624 0.85055 0.79911 0.77122 0.77566 1.19167 1.21679 1.21956 1.45887 1.66508 1.14774 1.08409 1.20463 0.77579 0.86793 0.84976 1.90736 1.50834 1.17848 1.85374 1.22465 1.03225 0.89899 0.84159 0.86020 1.22362 0.99220 0.95984 1.05184 1.86196 1.56510 1.50122 1.28831 1.20308 0.91682 0.95636 0.90239 1.22142 0.98442 0.96830 1.01940 1.22421 0.97239 1.01503 0.93006 1.23249 0.98423 0.89468 0.99913 1.67741 1.05637 1.21366 1.23625 1.22300 0.98491 0.99753 0.90057 0.94052 0.90595 0.90627 0.89570 0.89214 0.91234 0.92912 0.91560 0.92574 0.97162 0.96223 0.79382 0.93901 0.74506 0.91746 0.87292 0.89470 0.81502 0.80928 0.80066 0.82384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.48 71.98 0.68 -1.58 16 2 C 0.14 2.33 2.57 44.99 0.12 2.45 16 3 H 0.07 1.43 7.58 -2.39 -0.02 1.41 16 4 C -0.12 -1.72 4.75 30.60 0.15 -1.58 16 5 C -0.11 -2.21 5.10 30.60 0.16 -2.05 16 6 C -0.11 -3.22 5.33 30.59 0.16 -3.06 16 7 C 0.15 5.78 6.26 86.38 0.54 6.32 16 8 N -0.75 -38.38 5.60 -343.44 -1.92 -40.30 16 9 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 10 H 0.07 3.98 7.83 -2.92 -0.02 3.96 16 11 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 12 N -0.97 -59.19 13.06 21.65 0.28 -58.91 16 13 Si 0.97 46.04 29.55 68.60 2.03 48.06 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 16 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 17 N -0.70 -9.68 4.42 -442.55 -1.96 -11.63 16 18 C 0.52 10.19 7.20 87.66 0.63 10.82 16 19 O -0.57 -17.29 16.16 16.00 0.26 -17.04 16 20 C 0.06 0.87 2.65 29.85 0.08 0.95 16 21 H 0.12 1.14 6.36 -2.38 -0.02 1.12 16 22 C -0.17 -1.32 9.08 71.98 0.65 -0.67 16 23 O -0.30 -6.37 9.34 -73.45 -0.69 -7.05 16 24 C 0.07 1.27 6.62 22.60 0.15 1.41 16 25 C -0.17 -2.04 8.34 22.56 0.19 -1.85 16 26 C -0.12 -1.25 10.11 22.34 0.23 -1.03 16 27 C 0.05 0.64 11.18 84.69 0.95 1.59 16 28 N -0.47 -9.56 10.36 -195.44 -2.02 -11.58 16 29 C 0.05 1.06 11.14 84.80 0.94 2.01 16 30 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.31 7.75 -2.39 -0.02 1.29 16 36 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.37 20.15 7.67 -92.71 -0.71 19.44 16 42 H 0.25 14.83 8.31 -92.71 -0.77 14.05 16 43 H 0.42 3.05 8.02 -92.71 -0.74 2.30 16 44 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.11 0.24 7.57 -2.39 -0.02 0.23 16 46 H 0.09 0.50 6.92 -2.39 -0.02 0.49 16 47 H 0.17 1.05 5.59 -2.91 -0.02 1.03 16 48 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 49 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 50 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -79.68 412.44 2.39 -77.28 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -0.51 Total: 24.60 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 6.93 Total: -3.43 kcal Atomic # 7 Polarization: -116.81 SS G_CDS: -5.62 Total: -122.43 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.43 Total: -24.09 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -79.68 2.39 -77.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175189037.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.570 kcal (2) G-P(sol) polarization free energy of solvation -79.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds