Wall clock time and date at job start Tue Mar 31 2020 18:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47415 * 2 1 4 4 C 1.52999 * 109.47067 * 240.00584 * 2 1 3 5 5 C 1.53001 * 109.47417 * 175.00286 * 4 2 1 6 6 C 1.52999 * 109.47417 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47274 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.47237 * 179.97438 * 7 6 5 9 9 C 1.36933 * 120.00031 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00145 * 0.02562 * 9 8 7 11 11 C 1.38814 * 119.99981 * 179.97438 * 9 8 7 12 12 N 1.31619 * 119.99716 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 119.99919 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47280 * 90.00613 * 13 11 9 15 15 H 1.48504 * 109.47263 * 210.00273 * 13 11 9 16 16 H 1.48499 * 109.47284 * 330.00115 * 13 11 9 17 17 N 1.46501 * 109.47298 * 120.00371 * 2 1 3 18 18 C 1.34774 * 119.99721 * 274.99952 * 17 2 1 19 19 O 1.21277 * 120.00152 * 359.97438 * 18 17 2 20 20 C 1.50705 * 119.99823 * 180.02562 * 18 17 2 21 21 H 1.09009 * 109.46786 * 305.00051 * 20 18 17 22 22 C 1.52995 * 109.47385 * 64.99409 * 20 18 17 23 23 O 1.42900 * 109.47329 * 185.00164 * 20 18 17 24 24 C 1.35903 * 117.00371 * 154.69251 * 23 20 18 25 25 C 1.39150 * 120.47240 * 5.35998 * 24 23 20 26 26 C 1.38530 * 118.37390 * 180.02562 * 25 24 23 27 27 C 1.38262 * 119.22417 * 0.02562 * 26 25 24 28 28 N 1.31846 * 120.88478 * 359.97438 * 27 26 25 29 29 C 1.31844 * 121.77886 * 359.70325 * 28 27 26 30 30 H 1.09005 * 109.46506 * 299.99570 * 1 2 3 31 31 H 1.08998 * 109.47051 * 59.99343 * 1 2 3 32 32 H 1.09001 * 109.46947 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46920 * 294.99818 * 4 2 1 34 34 H 1.09001 * 109.47713 * 54.99566 * 4 2 1 35 35 H 1.09005 * 109.46693 * 299.99671 * 5 4 2 36 36 H 1.09001 * 109.47281 * 59.99564 * 5 4 2 37 37 H 1.09005 * 109.46920 * 299.99532 * 6 5 4 38 38 H 1.09001 * 109.47251 * 59.99545 * 6 5 4 39 39 H 1.08992 * 109.47492 * 300.00091 * 7 6 5 40 40 H 1.09001 * 109.46913 * 59.99878 * 7 6 5 41 41 H 0.97006 * 119.99562 * 0.02562 * 8 7 6 42 42 H 0.97001 * 119.99462 * 179.97438 * 12 11 9 43 43 H 0.97003 * 119.99844 * 94.99715 * 17 2 1 44 44 H 1.09003 * 109.46955 * 60.00245 * 22 20 18 45 45 H 1.09000 * 109.47348 * 179.97438 * 22 20 18 46 46 H 1.08996 * 109.47505 * 300.00420 * 22 20 18 47 47 H 1.07995 * 120.80867 * 359.97438 * 25 24 23 48 48 H 1.07997 * 120.39001 * 180.02562 * 26 25 24 49 49 H 1.07994 * 119.55633 * 179.97438 * 27 26 25 50 50 H 1.08004 * 119.66042 * 180.28929 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0749 -1.3349 -2.5628 7 6 5.5997 -1.2265 -2.6275 8 7 6.0881 -1.9180 -3.8231 9 6 7.4300 -1.9537 -4.0932 10 1 8.1284 -1.4724 -3.4247 11 6 7.8928 -2.6094 -5.2258 12 7 7.0417 -3.1964 -6.0403 13 14 9.7235 -2.6587 -5.5939 14 1 10.3243 -3.8583 -4.9574 15 1 9.9316 -2.7213 -7.0630 16 1 10.3700 -1.4357 -5.0541 17 7 2.0184 -0.6907 1.1961 18 6 2.1471 -0.0184 2.3571 19 8 1.8591 1.1585 2.4115 20 6 2.6501 -0.7287 3.5874 21 1 2.0293 -1.6036 3.7811 22 6 4.0981 -1.1700 3.3654 23 8 2.5882 0.1566 4.7074 24 6 2.4852 -0.4111 5.9378 25 6 2.5553 -1.7930 6.0854 26 6 2.4447 -2.3254 7.3596 27 6 2.2690 -1.4735 8.4342 28 7 2.2067 -0.1681 8.2599 29 6 2.3138 0.3788 7.0650 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7516 -1.7714 -1.2057 34 1 1.6054 -0.2616 -2.1370 35 1 3.8532 0.4371 -1.3574 36 1 3.9995 -1.0728 -0.4261 37 1 3.7865 -2.3852 -2.5187 38 1 3.6403 -0.8758 -3.4507 39 1 5.8877 -0.1763 -2.6717 40 1 6.0346 -1.6854 -1.7396 41 1 5.4607 -2.3500 -4.4238 42 1 7.3651 -3.6543 -6.8319 43 1 2.2491 -1.6319 1.1525 44 1 4.7189 -0.2952 3.1717 45 1 4.4620 -1.6834 4.2555 46 1 4.1453 -1.8453 2.5112 47 1 2.6919 -2.4347 5.2276 48 1 2.4950 -3.3934 7.5116 49 1 2.1817 -1.8828 9.4298 50 1 2.2625 1.4527 6.9622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175189040.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:58 Heat of formation + Delta-G solvation = -44.248692 kcal Electronic energy + Delta-G solvation = -27951.296108 eV Core-core repulsion = 23978.756701 eV Total energy + Delta-G solvation = -3972.539407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.32677 -40.20462 -38.56211 -36.96580 -35.31678 -33.59455 -32.86919 -32.63177 -31.29039 -30.50307 -30.06199 -27.50604 -25.50275 -24.41140 -24.10548 -23.42163 -22.18961 -21.07202 -20.79734 -20.68276 -18.94844 -17.97314 -17.22272 -17.03007 -16.74544 -16.40053 -16.12966 -15.22158 -15.09158 -14.81651 -14.68924 -14.62594 -14.24344 -14.03981 -13.80277 -13.53153 -13.45269 -13.20039 -13.01992 -12.96316 -12.77800 -12.65650 -12.43547 -12.07926 -11.83369 -11.74798 -11.52373 -11.31662 -11.05312 -10.83320 -10.76334 -10.46361 -10.36238 -10.31343 -10.06631 -10.02662 -10.00740 -9.69600 -9.38781 -8.88783 -8.88004 -6.92672 -5.77633 -3.06083 0.67283 0.76494 2.09921 2.21003 3.10810 3.34445 3.42343 3.47472 3.49381 3.98120 4.10103 4.16547 4.26295 4.31426 4.36614 4.46753 4.61685 4.62370 4.75251 4.81533 4.89720 5.02990 5.08280 5.18315 5.27467 5.32132 5.37973 5.49961 5.52348 5.55563 5.57578 5.60865 5.62571 5.71830 5.81545 5.88815 5.91978 6.03263 6.12202 6.25164 6.27958 6.34551 6.41970 6.69128 6.85696 6.89707 7.11176 7.51796 7.68884 7.83224 8.41751 9.52541 10.11529 10.45994 11.45401 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.001837 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.828804 B =15235.495527 C =16711.078388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.091 0.909 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.934 5.934 13 Si 0.908 3.092 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.716 5.716 18 C 0.520 3.480 19 O -0.515 6.515 20 C 0.065 3.935 21 H 0.097 0.903 22 C -0.178 4.178 23 O -0.277 6.277 24 C 0.083 3.917 25 C -0.170 4.170 26 C -0.130 4.130 27 C 0.055 3.945 28 N -0.447 5.447 29 C 0.077 3.923 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.016 0.984 40 H 0.015 0.985 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.401 0.599 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.142 0.858 48 H 0.139 0.861 49 H 0.159 0.841 50 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.560 1.120 25.204 29.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.109 0.891 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.371 4.371 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.208 1.208 17 N -0.370 5.370 18 C 0.304 3.696 19 O -0.389 6.389 20 C 0.005 3.995 21 H 0.115 0.885 22 C -0.236 4.236 23 O -0.188 6.188 24 C 0.035 3.965 25 C -0.197 4.197 26 C -0.149 4.149 27 C -0.101 4.101 28 N -0.156 5.156 29 C -0.082 4.082 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.034 0.966 40 H 0.033 0.967 41 H 0.216 0.784 42 H 0.065 0.935 43 H 0.236 0.764 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.103 0.897 47 H 0.159 0.841 48 H 0.157 0.843 49 H 0.176 0.824 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -15.701 2.778 25.900 30.414 hybrid contribution 1.100 -1.618 -1.316 2.358 sum -14.601 1.160 24.584 28.616 Atomic orbital electron populations 1.22187 0.95196 1.02174 1.02678 1.21104 0.93839 0.97821 0.83389 0.89097 1.21951 0.96944 1.00963 0.96633 1.21529 0.93871 1.01204 0.98644 1.21729 0.97288 1.00237 0.97111 1.20645 0.90966 0.95346 0.90567 1.42384 1.05337 1.64900 1.25253 1.19252 0.83925 1.28369 1.05526 0.91232 1.24752 0.97749 1.00952 0.97704 1.69663 1.32769 1.40695 1.15191 0.86178 0.85076 0.77669 0.77214 1.21731 1.21733 1.20761 1.45985 1.67549 1.14166 1.09315 1.19950 0.78184 0.87467 0.84032 1.90757 1.48332 1.15383 1.84451 1.22286 0.99210 0.92844 0.85196 0.88492 1.22357 0.93864 1.03454 1.03881 1.86249 1.87369 1.34007 1.11166 1.20259 0.97103 0.92547 0.86565 1.21802 1.04456 0.94026 0.99376 1.22026 0.98750 1.01681 0.92484 1.22713 0.99087 0.88784 0.99556 1.67765 1.10417 1.13912 1.23471 1.22286 0.99902 1.00806 0.85182 0.92253 0.91276 0.92404 0.91255 0.89985 0.91894 0.92194 0.92127 0.92009 0.96566 0.96690 0.78352 0.93540 0.76405 0.90154 0.90645 0.89688 0.84052 0.84324 0.82418 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.48 37.16 0.35 -0.96 16 2 C 0.14 1.24 2.57 -67.93 -0.17 1.07 16 3 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 4 C -0.13 -1.10 4.75 -26.73 -0.13 -1.23 16 5 C -0.11 -1.28 5.10 -26.73 -0.14 -1.42 16 6 C -0.13 -1.89 5.33 -26.73 -0.14 -2.03 16 7 C 0.15 3.04 6.26 -4.04 -0.03 3.01 16 8 N -0.73 -18.83 5.60 -59.91 -0.34 -19.17 16 9 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 10 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 11 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 12 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 13 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 N -0.72 -5.58 4.49 -53.80 -0.24 -5.82 16 18 C 0.52 5.25 7.14 -10.98 -0.08 5.18 16 19 O -0.52 -7.50 16.17 -14.30 -0.23 -7.73 16 20 C 0.06 0.50 2.64 -27.88 -0.07 0.43 16 21 H 0.10 0.50 6.32 -51.92 -0.33 0.17 16 22 C -0.18 -1.13 9.15 37.15 0.34 -0.79 16 23 O -0.28 -2.84 9.35 -39.29 -0.37 -3.21 16 24 C 0.08 0.74 6.62 -39.07 -0.26 0.49 16 25 C -0.17 -1.14 8.36 -39.14 -0.33 -1.46 16 26 C -0.13 -0.76 10.11 -39.46 -0.40 -1.15 16 27 C 0.06 0.39 11.18 -17.54 -0.20 0.20 16 28 N -0.45 -4.25 10.36 -13.12 -0.14 -4.39 16 29 C 0.08 0.72 11.14 -17.37 -0.19 0.53 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.63 7.75 -51.93 -0.40 0.23 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.38 10.24 7.67 -40.82 -0.31 9.93 16 42 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.40 2.12 8.39 -40.82 -0.34 1.78 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.41 6.98 -51.93 -0.36 0.05 16 46 H 0.08 0.40 7.92 -51.93 -0.41 -0.01 16 47 H 0.14 0.62 5.61 -52.49 -0.29 0.33 16 48 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 49 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 50 H 0.17 1.37 8.06 -52.48 -0.42 0.94 16 LS Contribution 413.33 15.07 6.23 6.23 Total: -1.00 -35.66 413.33 -9.38 -45.04 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -8.31 Total: 4.89 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -1.69 Total: -5.65 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.01 Total: -57.02 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -0.60 Total: -10.94 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.66 -9.38 -45.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175189040.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.788 kcal (2) G-P(sol) polarization free energy of solvation -35.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds