Wall clock time and date at job start Tue Mar 31 2020 18:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47415 * 2 1 4 4 C 1.52999 * 109.47067 * 240.00584 * 2 1 3 5 5 C 1.53001 * 109.47417 * 175.00286 * 4 2 1 6 6 C 1.52999 * 109.47417 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47274 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.47237 * 179.97438 * 7 6 5 9 9 C 1.36933 * 120.00031 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00145 * 0.02562 * 9 8 7 11 11 C 1.38814 * 119.99981 * 179.97438 * 9 8 7 12 12 N 1.31619 * 119.99716 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 119.99919 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47280 * 90.00613 * 13 11 9 15 15 H 1.48504 * 109.47263 * 210.00273 * 13 11 9 16 16 H 1.48499 * 109.47284 * 330.00115 * 13 11 9 17 17 N 1.46501 * 109.47298 * 120.00371 * 2 1 3 18 18 C 1.34774 * 119.99721 * 274.99952 * 17 2 1 19 19 O 1.21277 * 120.00152 * 359.97438 * 18 17 2 20 20 C 1.50705 * 119.99823 * 180.02562 * 18 17 2 21 21 H 1.09009 * 109.46786 * 305.00051 * 20 18 17 22 22 C 1.52995 * 109.47385 * 64.99409 * 20 18 17 23 23 O 1.42900 * 109.47329 * 185.00164 * 20 18 17 24 24 C 1.35903 * 117.00371 * 154.69251 * 23 20 18 25 25 C 1.39150 * 120.47240 * 5.35998 * 24 23 20 26 26 C 1.38530 * 118.37390 * 180.02562 * 25 24 23 27 27 C 1.38262 * 119.22417 * 0.02562 * 26 25 24 28 28 N 1.31846 * 120.88478 * 359.97438 * 27 26 25 29 29 C 1.31844 * 121.77886 * 359.70325 * 28 27 26 30 30 H 1.09005 * 109.46506 * 299.99570 * 1 2 3 31 31 H 1.08998 * 109.47051 * 59.99343 * 1 2 3 32 32 H 1.09001 * 109.46947 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46920 * 294.99818 * 4 2 1 34 34 H 1.09001 * 109.47713 * 54.99566 * 4 2 1 35 35 H 1.09005 * 109.46693 * 299.99671 * 5 4 2 36 36 H 1.09001 * 109.47281 * 59.99564 * 5 4 2 37 37 H 1.09005 * 109.46920 * 299.99532 * 6 5 4 38 38 H 1.09001 * 109.47251 * 59.99545 * 6 5 4 39 39 H 1.08992 * 109.47492 * 300.00091 * 7 6 5 40 40 H 1.09001 * 109.46913 * 59.99878 * 7 6 5 41 41 H 0.97006 * 119.99562 * 0.02562 * 8 7 6 42 42 H 0.97001 * 119.99462 * 179.97438 * 12 11 9 43 43 H 0.97003 * 119.99844 * 94.99715 * 17 2 1 44 44 H 1.09003 * 109.46955 * 60.00245 * 22 20 18 45 45 H 1.09000 * 109.47348 * 179.97438 * 22 20 18 46 46 H 1.08996 * 109.47505 * 300.00420 * 22 20 18 47 47 H 1.07995 * 120.80867 * 359.97438 * 25 24 23 48 48 H 1.07997 * 120.39001 * 180.02562 * 26 25 24 49 49 H 1.07994 * 119.55633 * 179.97438 * 27 26 25 50 50 H 1.08004 * 119.66042 * 180.28929 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0749 -1.3349 -2.5628 7 6 5.5997 -1.2265 -2.6275 8 7 6.0881 -1.9180 -3.8231 9 6 7.4300 -1.9537 -4.0932 10 1 8.1284 -1.4724 -3.4247 11 6 7.8928 -2.6094 -5.2258 12 7 7.0417 -3.1964 -6.0403 13 14 9.7235 -2.6587 -5.5939 14 1 10.3243 -3.8583 -4.9574 15 1 9.9316 -2.7213 -7.0630 16 1 10.3700 -1.4357 -5.0541 17 7 2.0184 -0.6907 1.1961 18 6 2.1471 -0.0184 2.3571 19 8 1.8591 1.1585 2.4115 20 6 2.6501 -0.7287 3.5874 21 1 2.0293 -1.6036 3.7811 22 6 4.0981 -1.1700 3.3654 23 8 2.5882 0.1566 4.7074 24 6 2.4852 -0.4111 5.9378 25 6 2.5553 -1.7930 6.0854 26 6 2.4447 -2.3254 7.3596 27 6 2.2690 -1.4735 8.4342 28 7 2.2067 -0.1681 8.2599 29 6 2.3138 0.3788 7.0650 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7516 -1.7714 -1.2057 34 1 1.6054 -0.2616 -2.1370 35 1 3.8532 0.4371 -1.3574 36 1 3.9995 -1.0728 -0.4261 37 1 3.7865 -2.3852 -2.5187 38 1 3.6403 -0.8758 -3.4507 39 1 5.8877 -0.1763 -2.6717 40 1 6.0346 -1.6854 -1.7396 41 1 5.4607 -2.3500 -4.4238 42 1 7.3651 -3.6543 -6.8319 43 1 2.2491 -1.6319 1.1525 44 1 4.7189 -0.2952 3.1717 45 1 4.4620 -1.6834 4.2555 46 1 4.1453 -1.8453 2.5112 47 1 2.6919 -2.4347 5.2276 48 1 2.4950 -3.3934 7.5116 49 1 2.1817 -1.8828 9.4298 50 1 2.2625 1.4527 6.9622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175189040.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:57 Heat of formation + Delta-G solvation = -67.645695 kcal Electronic energy + Delta-G solvation = -27952.310678 eV Core-core repulsion = 23978.756701 eV Total energy + Delta-G solvation = -3973.553977 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.94480 -40.90944 -39.21006 -37.95860 -36.81495 -34.85508 -33.83614 -33.19638 -32.60519 -31.47074 -30.80183 -28.81516 -26.18736 -25.81507 -24.81520 -24.14558 -23.50937 -22.06242 -21.83999 -21.47219 -19.51988 -19.12900 -18.62225 -17.79615 -17.45695 -17.06779 -16.77443 -16.67921 -16.25714 -15.77785 -15.50646 -15.37297 -15.29905 -15.20517 -14.79514 -14.58546 -14.43943 -14.15162 -14.02037 -13.97242 -13.35885 -13.26097 -13.13507 -13.03384 -12.87255 -12.86504 -12.65046 -12.45482 -12.35061 -12.22585 -12.16242 -11.88425 -11.81103 -11.47475 -11.39917 -10.95021 -10.93609 -10.72289 -10.58771 -10.15609 -9.48212 -9.00993 -7.96776 -5.25669 0.13479 0.22542 1.44823 1.46728 1.48428 1.48576 1.57073 2.47977 2.55151 2.78799 3.36680 3.42572 3.55783 3.60074 3.65578 3.75434 3.79732 3.90132 4.03396 4.06655 4.13793 4.14944 4.31198 4.35434 4.41609 4.57749 4.60140 4.61892 4.65731 4.76504 4.77620 4.88469 4.92988 4.99401 5.00929 5.03179 5.07210 5.11292 5.12599 5.27677 5.31907 5.41277 5.44977 5.46464 5.54366 5.56290 6.12475 6.26342 6.47694 6.95881 7.14166 7.32145 8.09331 8.32296 9.26708 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.001837 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.828804 B =15235.495527 C =16711.078388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.145 3.855 3 H 0.066 0.934 4 C -0.116 4.116 5 C -0.106 4.106 6 C -0.112 4.112 7 C 0.147 3.853 8 N -0.749 5.749 9 C -0.250 4.250 10 H 0.073 0.927 11 C -0.076 4.076 12 N -0.968 5.968 13 Si 0.975 3.025 14 H -0.284 1.284 15 H -0.294 1.294 16 H -0.271 1.271 17 N -0.702 5.702 18 C 0.516 3.484 19 O -0.569 6.569 20 C 0.066 3.934 21 H 0.130 0.870 22 C -0.174 4.174 23 O -0.306 6.306 24 C 0.068 3.932 25 C -0.167 4.167 26 C -0.121 4.121 27 C 0.046 3.954 28 N -0.475 5.475 29 C 0.051 3.949 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.010 0.990 40 H 0.020 0.980 41 H 0.374 0.626 42 H 0.252 0.748 43 H 0.417 0.583 44 H 0.057 0.943 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.169 0.831 48 H 0.175 0.825 49 H 0.183 0.817 50 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.562 -1.198 26.056 30.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.041 3.959 3 H 0.084 0.916 4 C -0.153 4.153 5 C -0.144 4.144 6 C -0.150 4.150 7 C 0.021 3.979 8 N -0.391 5.391 9 C -0.382 4.382 10 H 0.091 0.909 11 C -0.268 4.268 12 N -0.619 5.619 13 Si 0.803 3.197 14 H -0.211 1.211 15 H -0.220 1.220 16 H -0.196 1.196 17 N -0.356 5.356 18 C 0.302 3.698 19 O -0.447 6.447 20 C 0.007 3.993 21 H 0.147 0.853 22 C -0.231 4.231 23 O -0.218 6.218 24 C 0.021 3.979 25 C -0.193 4.193 26 C -0.140 4.140 27 C -0.111 4.111 28 N -0.184 5.184 29 C -0.107 4.107 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.028 0.972 40 H 0.038 0.962 41 H 0.206 0.794 42 H 0.061 0.939 43 H 0.255 0.745 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.124 0.876 47 H 0.186 0.814 48 H 0.192 0.808 49 H 0.200 0.800 50 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.701 0.452 26.776 31.043 hybrid contribution 1.080 -0.905 -1.518 2.071 sum -14.621 -0.453 25.258 29.188 Atomic orbital electron populations 1.22128 0.94311 1.03079 1.02148 1.20994 0.94460 0.96745 0.83731 0.91565 1.21846 0.94732 1.02180 0.96585 1.21442 0.95772 1.00099 0.97094 1.21600 0.93635 1.01061 0.98721 1.20870 0.94346 0.94154 0.88533 1.42626 1.04469 1.65300 1.26744 1.19654 0.85397 1.27649 1.05477 0.90891 1.25593 1.02169 1.01241 0.97841 1.69813 1.34631 1.41832 1.15625 0.85126 0.79931 0.78010 0.76610 1.21113 1.22032 1.19643 1.45883 1.66468 1.14793 1.08448 1.20471 0.77294 0.86938 0.85139 1.90735 1.50860 1.17798 1.85353 1.22430 1.00483 0.92950 0.83481 0.85306 1.22367 0.92413 1.02955 1.05393 1.86212 1.87814 1.35633 1.12101 1.20325 0.98080 0.93666 0.85845 1.22142 1.03244 0.93104 1.00818 1.22425 0.96784 1.03275 0.91543 1.23264 0.98257 0.88197 1.01355 1.67742 1.11526 1.15542 1.23606 1.22281 1.01518 1.00969 0.85926 0.94115 0.90542 0.90699 0.89267 0.89611 0.92895 0.91071 0.91584 0.92649 0.97174 0.96161 0.79409 0.93927 0.74494 0.92391 0.89315 0.87576 0.81394 0.80767 0.80020 0.82540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.48 71.98 0.68 -1.62 16 2 C 0.14 2.34 2.57 44.99 0.12 2.45 16 3 H 0.07 1.44 7.58 -2.38 -0.02 1.42 16 4 C -0.12 -1.72 4.75 30.59 0.15 -1.57 16 5 C -0.11 -2.18 5.10 30.59 0.16 -2.02 16 6 C -0.11 -3.20 5.33 30.59 0.16 -3.04 16 7 C 0.15 5.75 6.26 86.38 0.54 6.30 16 8 N -0.75 -38.26 5.60 -343.46 -1.92 -40.19 16 9 C -0.25 -14.12 9.99 84.03 0.84 -13.28 16 10 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 11 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 12 N -0.97 -59.08 13.06 21.65 0.28 -58.80 16 13 Si 0.97 46.00 29.55 68.60 2.03 48.03 16 14 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 15 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 17 N -0.70 -9.67 4.49 -442.53 -1.99 -11.66 16 18 C 0.52 10.17 7.14 87.66 0.63 10.80 16 19 O -0.57 -17.28 16.17 15.97 0.26 -17.02 16 20 C 0.07 0.93 2.64 29.85 0.08 1.00 16 21 H 0.13 0.92 6.32 -2.38 -0.02 0.90 16 22 C -0.17 -1.85 9.15 71.98 0.66 -1.20 16 23 O -0.31 -6.35 9.35 -73.47 -0.69 -7.04 16 24 C 0.07 1.20 6.62 22.60 0.15 1.35 16 25 C -0.17 -1.81 8.36 22.56 0.19 -1.62 16 26 C -0.12 -1.04 10.11 22.35 0.23 -0.82 16 27 C 0.05 0.58 11.18 84.70 0.95 1.53 16 28 N -0.47 -9.12 10.36 -195.43 -2.02 -11.14 16 29 C 0.05 1.01 11.14 84.80 0.94 1.95 16 30 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.07 1.31 7.75 -2.39 -0.02 1.29 16 37 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.37 20.11 7.67 -92.70 -0.71 19.40 16 42 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 43 H 0.42 3.03 8.39 -92.71 -0.78 2.25 16 44 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.09 0.72 6.98 -2.39 -0.02 0.71 16 46 H 0.11 0.65 7.92 -2.39 -0.02 0.63 16 47 H 0.17 0.79 5.61 -2.91 -0.02 0.78 16 48 H 0.17 0.23 8.06 -2.91 -0.02 0.21 16 49 H 0.18 1.19 8.06 -2.91 -0.02 1.16 16 50 H 0.16 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -79.63 413.33 2.33 -77.30 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -0.55 Total: 24.22 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 6.93 Total: -3.71 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -5.65 Total: -121.79 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.43 Total: -24.06 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -79.63 2.33 -77.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175189040.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.655 kcal (2) G-P(sol) polarization free energy of solvation -79.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds