Wall clock time and date at job start Tue Mar 31 2020 18:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35682 * 117.00164 * 2 1 4 4 C 1.38918 * 119.68399 * 180.02562 * 3 2 1 5 5 C 1.38380 * 119.11367 * 179.97438 * 4 3 2 6 6 C 1.50696 * 120.75939 * 180.27438 * 5 4 3 7 7 C 1.50696 * 109.46809 * 269.71699 * 6 5 4 8 8 O 1.21277 * 120.00403 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99971 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00243 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46976 * 34.99954 * 10 9 7 12 12 C 1.52999 * 109.46892 * 275.00341 * 10 9 7 13 13 C 1.53000 * 109.47293 * 155.00346 * 10 9 7 14 14 C 1.53004 * 109.46840 * 295.00136 * 13 10 9 15 15 C 1.53002 * 109.47342 * 180.02562 * 14 13 10 16 16 C 1.52990 * 109.47436 * 180.02562 * 15 14 13 17 17 N 1.46505 * 109.47275 * 179.97438 * 16 15 14 18 18 C 1.36932 * 119.99903 * 179.97438 * 17 16 15 19 19 H 1.08007 * 120.00466 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99767 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00181 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99982 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47145 * 90.00532 * 22 20 18 24 24 H 1.48502 * 109.47244 * 210.00547 * 22 20 18 25 25 H 1.48498 * 109.47058 * 330.00489 * 22 20 18 26 26 C 1.38835 * 118.47905 * 359.97438 * 5 4 3 27 27 C 1.38040 * 119.29432 * 0.02562 * 26 5 4 28 28 N 1.31976 * 120.83318 * 359.97438 * 27 26 5 29 29 H 1.08998 * 109.47007 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47251 * 300.00706 * 1 2 3 31 31 H 1.08997 * 109.46674 * 60.00490 * 1 2 3 32 32 H 1.08004 * 120.44387 * 359.97438 * 4 3 2 33 33 H 1.08998 * 109.47409 * 29.72276 * 6 5 4 34 34 H 1.09003 * 109.46995 * 149.72068 * 6 5 4 35 35 H 0.97005 * 119.99613 * 0.02562 * 9 7 6 36 36 H 1.08997 * 109.47624 * 60.00107 * 12 10 9 37 37 H 1.09001 * 109.46908 * 180.02562 * 12 10 9 38 38 H 1.09001 * 109.46995 * 299.99602 * 12 10 9 39 39 H 1.09001 * 109.47246 * 54.99631 * 13 10 9 40 40 H 1.08998 * 109.47070 * 175.00452 * 13 10 9 41 41 H 1.09001 * 109.46789 * 299.99775 * 14 13 10 42 42 H 1.09001 * 109.47256 * 59.99828 * 14 13 10 43 43 H 1.09010 * 109.46584 * 300.00105 * 15 14 13 44 44 H 1.09000 * 109.46789 * 59.99324 * 15 14 13 45 45 H 1.09010 * 109.47191 * 299.99575 * 16 15 14 46 46 H 1.09000 * 109.47813 * 59.99793 * 16 15 14 47 47 H 0.97000 * 119.99631 * 359.97438 * 17 16 15 48 48 H 0.96999 * 120.00537 * 179.97438 * 21 20 18 49 49 H 1.07998 * 120.35161 * 179.97438 * 26 5 4 50 50 H 1.08000 * 119.58580 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 -0.0005 5 6 4.0486 2.5131 -0.0011 6 6 5.5513 2.6268 -0.0079 7 6 6.0582 2.6690 1.4106 8 8 5.2764 2.6119 2.3360 9 7 7.3806 2.7693 1.6510 10 6 7.8735 2.8098 3.0300 11 1 7.2498 2.1732 3.6576 12 6 7.8190 4.2480 3.5490 13 6 9.3181 2.3074 3.0702 14 6 9.3560 0.8312 2.6700 15 6 10.8006 0.3286 2.7108 16 6 10.8386 -1.1474 2.3099 17 7 12.2219 -1.6285 2.3484 18 6 12.5036 -2.9292 2.0264 19 1 11.7061 -3.6005 1.7435 20 6 13.8143 -3.3848 2.0623 21 7 14.7862 -2.5668 2.4065 22 14 14.1988 -5.1591 1.6223 23 1 14.4656 -5.2610 0.1650 24 1 15.3961 -5.6081 2.3773 25 1 13.0403 -6.0187 1.9747 26 6 3.2505 3.6491 -0.0016 27 6 1.8772 3.5097 -0.0010 28 7 1.3186 2.3140 -0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 4.0229 0.3694 -0.0005 33 1 5.9786 1.7653 -0.5210 34 1 5.8442 3.5402 -0.5257 35 1 8.0060 2.8146 0.9109 36 1 6.7898 4.6059 3.5204 37 1 8.1861 4.2782 4.5749 38 1 8.4427 4.8846 2.9214 39 1 9.9242 2.8881 2.3748 40 1 9.7141 2.4205 4.0794 41 1 8.7499 0.2505 3.3654 42 1 8.9599 0.7180 1.6608 43 1 11.4070 0.9093 2.0156 44 1 11.1962 0.4417 3.7201 45 1 10.2320 -1.7284 3.0048 46 1 10.4431 -1.2602 1.3005 47 1 12.9381 -1.0255 2.6021 48 1 15.7021 -2.8852 2.4320 49 1 3.6994 4.6314 -0.0016 50 1 1.2519 4.3903 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175272103.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:05 Heat of formation + Delta-G solvation = -50.139360 kcal Electronic energy + Delta-G solvation = -27612.289902 eV Core-core repulsion = 23639.495056 eV Total energy + Delta-G solvation = -3972.794845 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.05007 -40.01862 -38.22977 -37.02396 -35.28508 -34.11624 -33.27350 -31.68735 -31.04465 -30.37057 -28.78494 -27.46576 -27.34490 -24.28861 -23.78962 -22.95003 -22.04126 -20.99480 -20.73974 -20.62580 -18.22576 -17.47245 -17.41635 -17.00827 -16.50582 -16.25919 -16.17216 -15.49963 -15.07359 -14.77847 -14.69708 -14.45528 -14.20232 -13.97989 -13.59264 -13.56786 -13.24552 -13.11732 -13.05011 -12.94044 -12.60251 -12.40976 -12.25086 -11.91085 -11.78614 -11.50950 -11.47250 -11.27671 -11.01229 -10.80852 -10.72162 -10.42925 -10.34724 -10.30059 -9.99278 -9.98827 -9.80672 -9.66498 -9.27714 -8.85480 -8.79991 -6.90011 -5.75110 -3.03481 0.84222 0.93208 2.38473 2.75922 2.94600 3.44382 3.49356 3.50949 3.51340 3.98055 4.15532 4.44352 4.53452 4.60360 4.68525 4.75252 4.80576 4.88496 4.95783 4.96449 5.00770 5.02358 5.09180 5.23207 5.31572 5.38184 5.42375 5.43180 5.54270 5.55538 5.60177 5.67699 5.76953 5.87313 5.93262 5.94296 6.07879 6.09064 6.20356 6.29573 6.35683 6.38244 6.45925 6.89357 6.93313 6.93961 7.24864 7.54492 7.71350 7.97997 8.44247 9.55003 10.14213 10.48774 11.47948 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011621 B = 0.001864 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.887020 B =15020.131271 C =16972.552745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.308 6.308 3 C 0.321 3.679 4 C -0.175 4.175 5 C 0.014 3.986 6 C -0.108 4.108 7 C 0.517 3.483 8 O -0.532 6.532 9 N -0.722 5.722 10 C 0.141 3.859 11 H 0.088 0.912 12 C -0.163 4.163 13 C -0.127 4.127 14 C -0.114 4.114 15 C -0.126 4.126 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.197 4.197 27 C 0.139 3.861 28 N -0.543 5.543 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.141 0.859 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.402 0.598 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.135 0.865 50 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.519 17.896 -5.739 31.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.215 6.215 3 C 0.143 3.857 4 C -0.195 4.195 5 C 0.006 3.994 6 C -0.147 4.147 7 C 0.303 3.697 8 O -0.408 6.408 9 N -0.374 5.374 10 C 0.037 3.963 11 H 0.106 0.894 12 C -0.221 4.221 13 C -0.165 4.165 14 C -0.152 4.152 15 C -0.164 4.164 16 C 0.025 3.975 17 N -0.379 5.379 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.584 5.584 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.217 4.217 27 C -0.016 4.016 28 N -0.267 5.267 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.236 0.764 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.216 0.784 48 H 0.064 0.936 49 H 0.153 0.847 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -26.912 17.310 -5.092 32.401 hybrid contribution 1.533 -0.575 -0.496 1.711 sum -25.379 16.735 -5.588 30.909 Atomic orbital electron populations 1.22851 0.77206 1.02974 1.02377 1.86254 1.22936 1.24530 1.87794 1.19750 0.89223 0.84697 0.92056 1.20893 0.92139 0.99014 1.07496 1.19417 0.94425 0.92375 0.93217 1.20732 0.92035 1.06168 0.95807 1.20306 0.82480 0.76190 0.90748 1.90748 1.55487 1.48817 1.45787 1.46103 1.07067 1.74974 1.09249 1.21052 0.95671 0.97028 0.82591 0.89359 1.22171 1.02221 0.96289 1.01412 1.21942 0.94367 0.97056 1.03116 1.21520 0.97661 0.94456 1.01561 1.21728 0.95387 0.97501 1.01738 1.20650 0.88289 0.91395 0.97208 1.42388 1.02326 1.10579 1.82595 1.19256 0.92339 0.87592 1.37795 0.91228 1.24753 0.95734 0.98098 1.02624 1.69658 0.99361 1.34462 1.54875 0.86177 0.77508 0.84602 0.77850 1.21728 1.21757 1.20763 1.21803 0.94803 0.99157 1.05953 1.22315 0.92656 0.93606 0.93073 1.67290 1.41036 0.98876 1.19474 0.88600 0.92314 0.92352 0.84113 0.86984 0.87123 0.76391 0.92333 0.91520 0.92476 0.91307 0.90208 0.92006 0.92126 0.92130 0.92059 0.96577 0.96639 0.78356 0.93554 0.84686 0.82369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.38 101.05 1.05 1.37 16 2 O -0.31 -3.40 10.48 -18.75 -0.20 -3.60 16 3 C 0.32 3.67 7.49 -17.12 -0.13 3.54 16 4 C -0.17 -1.82 9.74 -39.28 -0.38 -2.21 16 5 C 0.01 0.12 4.41 -104.35 -0.46 -0.34 16 6 C -0.11 -0.70 5.88 -29.04 -0.17 -0.87 16 7 C 0.52 4.93 7.79 -10.99 -0.09 4.85 16 8 O -0.53 -7.40 15.70 5.56 0.09 -7.32 16 9 N -0.72 -5.72 4.53 -53.81 -0.24 -5.96 16 10 C 0.14 1.28 2.57 -67.93 -0.17 1.11 16 11 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 12 C -0.16 -1.34 9.48 37.16 0.35 -0.99 16 13 C -0.13 -1.17 4.75 -26.73 -0.13 -1.30 16 14 C -0.11 -1.34 5.10 -26.73 -0.14 -1.48 16 15 C -0.13 -1.95 5.33 -26.74 -0.14 -2.09 16 16 C 0.15 3.10 6.26 -4.04 -0.03 3.08 16 17 N -0.73 -19.11 5.60 -59.91 -0.34 -19.45 16 18 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 19 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 20 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 21 N -0.93 -28.62 13.06 55.49 0.72 -27.90 16 22 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 C -0.20 -1.59 9.81 -39.43 -0.39 -1.98 16 27 C 0.14 1.19 11.18 -17.56 -0.20 0.99 16 28 N -0.54 -5.87 9.22 -13.33 -0.12 -5.99 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 31 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 32 H 0.14 1.34 8.06 -52.48 -0.42 0.91 16 33 H 0.11 0.55 8.10 -51.93 -0.42 0.13 16 34 H 0.11 0.41 8.10 -51.93 -0.42 -0.01 16 35 H 0.40 2.25 8.60 -40.82 -0.35 1.89 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 43 H 0.06 0.94 8.14 -51.92 -0.42 0.51 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 48 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 50 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 419.01 15.07 6.31 6.31 Total: -1.00 -36.19 419.01 -8.67 -44.86 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -8.61 Total: 5.26 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -1.26 Total: -3.88 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 0.02 Total: -59.30 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -0.11 Total: -10.91 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -36.19 -8.67 -44.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175272103.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.280 kcal (2) G-P(sol) polarization free energy of solvation -36.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds